FvH4_4g27360

CLAVATA3 ESR (CLE)-related protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb4
OG0014327
Physical Location & Seq
Forward (+)
28390575 .. 28390901
327 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_4g27360.t1

Sequence Viewer

Length: 327 bp
ATGTTGTTCGCCGGCGGCAGGAGGAGGAGGCAGTTGCGGTATTCGTGTCTGGCGGTGGCGTTGATCGTGATGTCTGTTATACAGATTTGGGTATGCTCCGACGACCGGTACTGCAAAGCTGGGGCAATTCGGGCACTTCCACCACCAGGAAATGTAAATCAGCTTCATCGTCTTTCTCATGTAAAGAAGAAGGCTAGTAGAGAGGAGCTGTTCCGTAAGTTCTTCAGCGGAATATCATCATCGGCTTCAAAACTCAACAAAACCGAAAAGGGATTCGAAGATAGCAAACGAAGAGTGCCCAGTTGCCCAGATCCTCTCCACAACTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

109

Amino Acids

12.23

Weight (kDa)

10.4

Isoelectric Point (pI)

70.28

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0014327)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G25425 AT3G25905
fragaria_vesca FvH4_4g27360
prunus_persica Prupe.1G311100_v2.0.a1
pyrus_communis pycom13g03640 pycom16g03690
rosa_chinensis RchiOBHm_Chr4g0435171
rosa_laevigata RLG00000006612 RLG00000006613
rosa_multiflora Rmu_ssc0000339.1_g000033
rosa_roxburghii Rroxscaffold_5G00376390
rosa_rugosa Rorug04G0282700
rosa_samantha Rh4AG338500 Rh4BG346600 Rh4CG361100 Rh4DG341000
rosa_wichuraiana Rw4G029520

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 4 cut(s) 15, 37, 53, 228
AclWI GGATC 1 cut(s) 305
AcuI CTGAAG 1 cut(s) 208
AfaI GTAC 1 cut(s) 110
AfiI CCNNNNNNNGG 3 cut(s) 18, 105, 146
AgeI ACCGGT 1 cut(s) 105
AgsI TTSAA 1 cut(s) 249
AjnI CCWGG 1 cut(s) 145
AluBI AGCT 3 cut(s) 119, 163, 208
AluI AGCT 3 cut(s) 119, 163, 208
AlwI GGATC 1 cut(s) 305
AsiGI ACCGGT 1 cut(s) 105
AsuII TTCGAA 1 cut(s) 276
BaeGI GKGCMC 2 cut(s) 136, 300
BarI GAAGNNNNNNTAC 2 cut(s) 147, 179
BciT130I CCWGG 1 cut(s) 147
BfaI CTAG 2 cut(s) 195, 325
BisI GCNGC 1 cut(s) 16
BlsI GCNGC 1 cut(s) 17
Bme1390I CCNGG 1 cut(s) 147
BmrFI CCNGG 1 cut(s) 147
BmrI ACTGGG 1 cut(s) 294
BmuI ACTGGG 1 cut(s) 294
Bpu14I TTCGAA 1 cut(s) 276
BsaWI WCCGGW 1 cut(s) 105
Bsc4I CCNNNNNNNGG 3 cut(s) 18, 105, 146
Bse118I RCCGGY 2 cut(s) 11, 105
Bse1I ACTGG 1 cut(s) 300
BseBI CCWGG 1 cut(s) 147
BseLI CCNNNNNNNGG 3 cut(s) 18, 105, 146
BseNI ACTGG 1 cut(s) 300
BseRI GAGGAG 3 cut(s) 37, 40, 218
BseSI GKGCMC 2 cut(s) 136, 300
BseYI CCCAGC 1 cut(s) 119
Bsh1285I CGRYCG 1 cut(s) 106
BshTI ACCGGT 1 cut(s) 105
BsiEI CGRYCG 1 cut(s) 106
BsiSI CCGG 2 cut(s) 12, 106
BslI CCNNNNNNNGG 3 cut(s) 18, 105, 146
Bsp119I TTCGAA 1 cut(s) 276
Bsp1286I GDGCHC 2 cut(s) 136, 300
Bsp143I GATC 2 cut(s) 63, 310
BspACI CCGC 4 cut(s) 15, 37, 53, 228
BspPI GGATC 1 cut(s) 305
BspT104I TTCGAA 1 cut(s) 276
BsrFI RCCGGY 2 cut(s) 11, 105
BsrI ACTGG 1 cut(s) 300
BssAI RCCGGY 2 cut(s) 11, 105
BssMI GATC 2 cut(s) 63, 310
Bst2UI CCWGG 1 cut(s) 147
Bst6I CTCTTC 1 cut(s) 286
BstBI TTCGAA 1 cut(s) 276
BstC8I GCNNGC 1 cut(s) 13
BstKTI GATC 2 cut(s) 66, 313
BstMBI GATC 2 cut(s) 63, 310
BstMCI CGRYCG 1 cut(s) 106
BstMWI GCNNNNNNNGC 1 cut(s) 131
BstNI CCWGG 1 cut(s) 147
BstSCI CCNGG 1 cut(s) 145
BstSLI GKGCMC 2 cut(s) 136, 300
BstX2I RGATCY 1 cut(s) 310
BstYI RGATCY 1 cut(s) 310
Cac8I GCNNGC 1 cut(s) 13
Cfr10I RCCGGY 2 cut(s) 11, 105
Csp6I GTAC 1 cut(s) 109
CspAI ACCGGT 1 cut(s) 105
CviAII CATG 1 cut(s) 179
CviJI RGCY 5 cut(s) 119, 163, 194, 208, 245
CviKI_1 RGCY 5 cut(s) 119, 163, 194, 208, 245
CviQI GTAC 1 cut(s) 109
DpnI GATC 2 cut(s) 65, 312
DpnII GATC 2 cut(s) 63, 310
Eam1104I CTCTTC 1 cut(s) 286
EarI CTCTTC 1 cut(s) 286
Eco57I CTGAAG 1 cut(s) 208
EcoRII CCWGG 1 cut(s) 145
FaeI CATG 1 cut(s) 182
FaiI YATR 3 cut(s) 80, 94, 180
FatI CATG 1 cut(s) 178
Fnu4HI GCNGC 1 cut(s) 16
Fsp4HI GCNGC 1 cut(s) 16
FspBI CTAG 2 cut(s) 195, 325
GluI GCNGC 1 cut(s) 16
GsaI CCCAGC 1 cut(s) 123
HapII CCGG 2 cut(s) 12, 106
Hin1II CATG 1 cut(s) 182
HinfI GANTC 1 cut(s) 273
HpaII CCGG 2 cut(s) 12, 106
Hpy188I TCNGA 1 cut(s) 100
Hpy188III TCNNGA 1 cut(s) 67
Hpy99I CGWCG 1 cut(s) 104
HpyAV CCTTC 1 cut(s) 184
HpyCH4V TGCA 1 cut(s) 114
HpyF10VI GCNNNNNNNGC 1 cut(s) 131
Hsp92II CATG 1 cut(s) 182
KroI GCCGGC 1 cut(s) 11
KroNI GCCGGC 1 cut(s) 13
Kzo9I GATC 2 cut(s) 63, 310
LmnI GCTCC 2 cut(s) 101, 205
LpnPI CCDG 9 cut(s) 4, 25, 35, 105, 119, 132, 159, 313, 321
MaeI CTAG 2 cut(s) 195, 325
MalI GATC 2 cut(s) 65, 312
MboI GATC 2 cut(s) 63, 310
MboII GAAGA 4 cut(s) 199, 214, 290, 303
MflI RGATCY 1 cut(s) 310
MhlI GDGCHC 2 cut(s) 136, 300
MluCI AATT 1 cut(s) 126
MmeI TCCRAC 1 cut(s) 123
MnlI CCTC 5 cut(s) 15, 18, 21, 196, 324
MreI CGCCGGCG 1 cut(s) 11
MroNI GCCGGC 1 cut(s) 11
MspA1I CMGCKG 1 cut(s) 228
MspI CCGG 2 cut(s) 12, 106
MspR9I CCNGG 1 cut(s) 147
MvaI CCWGG 1 cut(s) 147
MwoI GCNNNNNNNGC 1 cut(s) 131
NaeI GCCGGC 1 cut(s) 13
NdeII GATC 2 cut(s) 63, 310
NgoMIV GCCGGC 1 cut(s) 11
NlaIII CATG 1 cut(s) 182
NspV TTCGAA 1 cut(s) 276
PdiI GCCGGC 1 cut(s) 13
PfeI GAWTC 1 cut(s) 273
PinAI ACCGGT 1 cut(s) 105
PkrI GCNGC 1 cut(s) 17
Psp6I CCWGG 1 cut(s) 145
PspFI CCCAGC 1 cut(s) 119
PspGI CCWGG 1 cut(s) 145
PsuI RGATCY 1 cut(s) 310
RsaI GTAC 1 cut(s) 110
RsaNI GTAC 1 cut(s) 109
SatI GCNGC 1 cut(s) 16
Sau3AI GATC 2 cut(s) 63, 310
ScrFI CCNGG 1 cut(s) 147
SduI GDGCHC 2 cut(s) 136, 300
SetI ASST 3 cut(s) 121, 165, 210
SfuI TTCGAA 1 cut(s) 276
SgrAI CRCCGGYG 1 cut(s) 11
Sse9I AATT 1 cut(s) 126
SsiI CCGC 4 cut(s) 15, 37, 53, 228
SspMI CTAG 2 cut(s) 195, 325
StyD4I CCNGG 1 cut(s) 145
TaqI TCGA 1 cut(s) 276
TasI AATT 1 cut(s) 126
TauI GCSGC 1 cut(s) 18
TfiI GAWTC 1 cut(s) 273
TspDTI ATGAA 1 cut(s) 155
TspGWI ACGGA 1 cut(s) 203
XspI CTAG 2 cut(s) 195, 325
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.