Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0014321

Physical Location & Seq

Genomic Coordinates Reverse (-)

9491055 .. 9492655

Gene Structure 1601 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT3G25920.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 834 bp

ATGGCTACTCCACTCTCAATCTCATCAAATCCTCTCACCTCCCGCCATTGTTACCGTCTCCACTTATCTTCTACTTCATTCAAGGGAAATGTAAGTGTTTTGGGGGCAAACCCAAGTCAGATTCTATCTCTGAAACTCAACCAAACCCTTAAAACGAGAAACCAACAGCAATTTGCGAGACCCCTTGTTGTGGTTAGCCAAACGGCGGCTACGTCGTCGGCAGTTGTAGCTCCGGAGAGATTCCGTTTGGATAATCTTGGACCACAGCCAGGTTCGAGGAAGAAGCAGAAGAGAAAAGGTAGAGGTATCTCTGCAGGACAAGGAGCAAGTTGTGGTTTTGGTATGAGAGGTCAGAAATCAAGATCGGGTCCTGGGATTATGAGAGGCTTTGAAGGTGGTCAAACTGCTCTTTATCGTCGTCTTCCCAAACTTAGAGGAATCGCTGGAGGTATGCGTTCAGGATTACCTAAATACTTACCGGTTAATATCAAAGACATAGAAACAGCTGGGTTTCAAGAGGGAGATGAAGTGTCATTGGAGACATTGAAGCAAAAGGGTTTGATTAATCCTTCAGGGAGAGAAAGGAAACTCCCTCTTAAGATTCTGGGTACAGGAGAACTAAGCATGAAGCTCACCTTCAAAGCTCGTGCCTTCTCAACACAAGCAAAAGAGAAGCTTGAAGCTTCAGGTTGTACACTCACTGTGTTGCCGGGAAGAAAGAAATGGGTTAAGCCATCTGTTGCAAAGAACCAAGCACGAGCAGATGAATACTTTGCCAAGAAGAGAGCTGCAGCAGCAGAAGCAGCAACTTCAGAGCCAGCAGCCTCTGCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000311 GO:0000313 GO:0000315 GO:0003674 GO:0003735 GO:0005198 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005840 GO:0006412 GO:0006518 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009507 GO:0009526 GO:0009532 GO:0009536 GO:0009547 GO:0009570 GO:0009719 GO:0009725 GO:0009735 GO:0009941 GO:0009987 GO:0010033 GO:0010467 GO:0015934 GO:0019538 GO:0031967 GO:0031975 GO:0032991 GO:0034641 GO:0034645 GO:0042221 GO:0043043 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044391 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0050896 GO:0071704 GO:1901564 GO:1901566 GO:1901576 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosomal_L27A

Protein Analysis

277

Amino Acids

29.71

Weight (kDa)

10.77

Isoelectric Point (pI)

35.17

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ribosomal_L27A	PF00828	161 - 233	2e-13	Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0014321)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G25920
fragaria_vesca	FvH4_4g27310
malus_domestica	MD13G1041400.v1.1 MD16G1042300.v1.1
prunus_persica	Prupe.1G311800_v2.0.a1 Prupe.1G311800_v2.0.a1
pyrus_communis	pycom13g03590
rosa_chinensis	RchiOBHm_Chr4g0435111
rosa_laevigata	RLG00000006619
rosa_multiflora	Rmu_sc0000400.1_g000009
rosa_roxburghii	Rroxscaffold_5G00376320
rosa_rugosa	Rorug04G0282400
rosa_samantha	Rh4AG337900 Rh4BG346000 Rh4CG360500 Rh4DG340400
rosa_wichuraiana	Rw4G029460

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccIII	TCCGGA	1 cut(s)	232
AciI	CCGC	2 cut(s)	43, 206
AcuI	CTGAAG	3 cut(s)	555, 669, 795
AfaI	GTAC	2 cut(s)	610, 694
AfiI	CCNNNNNNNGG	3 cut(s)	190, 205, 269
AflII	CTTAAG	1 cut(s)	596
AgeI	ACCGGT	1 cut(s)	478
AgsI	TTSAA	6 cut(s)	82, 392, 515, 547, 640, 680
AjnI	CCWGG	2 cut(s)	268, 370
AluBI	AGCT	7 cut(s)	230, 506, 631, 644, 676, 683, 788
AluI	AGCT	7 cut(s)	230, 506, 631, 644, 676, 683, 788
Alw26I	GTCTC	3 cut(s)	62, 172, 533
AlwNI	CAGNNNCTG	1 cut(s)	827
Aor13HI	TCCGGA	1 cut(s)	232
ApeKI	GCWGC	5 cut(s)	788, 791, 794, 803, 821
AseI	ATTAAT	1 cut(s)	564
AsiGI	ACCGGT	1 cut(s)	478
AspS9I	GGNCC	2 cut(s)	260, 368
AsuC2I	CCSGG	1 cut(s)	711
AsuHPI	GGTGA	2 cut(s)	28, 625
AvaII	GGWCC	2 cut(s)	260, 368
BauI	CACGAG	2 cut(s)	645, 756
BbsI	GAAGAC	1 cut(s)	413
BbvI	GCAGC	4 cut(s)	775, 803, 806, 815
BccI	CCATC	1 cut(s)	742
BceAI	ACGGC	1 cut(s)	219
BciT130I	CCWGG	2 cut(s)	270, 372
BcnI	CCSGG	1 cut(s)	711
BcoDI	GTCTC	3 cut(s)	62, 172, 533
BfmI	CTRYAG	2 cut(s)	312, 789
BfrI	CTTAAG	1 cut(s)	596
BisI	GCNGC	6 cut(s)	207, 789, 792, 795, 804, 822
BlsI	GCNGC	6 cut(s)	208, 790, 793, 796, 805, 823
Bme1390I	CCNGG	3 cut(s)	270, 372, 711
Bme18I	GGWCC	2 cut(s)	260, 368
BmgT120I	GGNCC	2 cut(s)	260, 368
BmiI	GGNNCC	1 cut(s)	369
BmrFI	CCNGG	3 cut(s)	270, 372, 711
BpiI	GAAGAC	1 cut(s)	413
BpmI	CTGGAG	1 cut(s)	465
BpuMI	CCSGG	1 cut(s)	711
BsaI	GGTCTC	1 cut(s)	172
BsaJI	CCNNGG	1 cut(s)	371
BsaWI	WCCGGW	2 cut(s)	232, 478
BsaXI	ACNNNNNCTCC	2 cut(s)	513, 543
Bsc4I	CCNNNNNNNGG	3 cut(s)	190, 205, 269
Bse118I	RCCGGY	1 cut(s)	478
BseAI	TCCGGA	1 cut(s)	232
BseBI	CCWGG	2 cut(s)	270, 372
BseDI	CCNNGG	1 cut(s)	371
BseLI	CCNNNNNNNGG	3 cut(s)	190, 205, 269
BseXI	GCAGC	4 cut(s)	775, 803, 806, 815
BseYI	CCCAGC	1 cut(s)	506
BshTI	ACCGGT	1 cut(s)	478
BsiSI	CCGG	3 cut(s)	233, 479, 710
BslI	CCNNNNNNNGG	3 cut(s)	190, 205, 269
BsmAI	GTCTC	3 cut(s)	62, 172, 533
BsmBI	CGTCTC	1 cut(s)	62
Bso31I	GGTCTC	1 cut(s)	172
Bsp13I	TCCGGA	1 cut(s)	232
Bsp1407I	TGTACA	1 cut(s)	692
Bsp143I	GATC	1 cut(s)	362
BspACI	CCGC	2 cut(s)	43, 206
BspEI	TCCGGA	1 cut(s)	232
BspLI	GGNNCC	1 cut(s)	369
BspMAI	CTGCAG	2 cut(s)	316, 793
BspTI	CTTAAG	1 cut(s)	596
BspTNI	GGTCTC	1 cut(s)	172
BsrFI	RCCGGY	1 cut(s)	478
BsrGI	TGTACA	1 cut(s)	692
BssAI	RCCGGY	1 cut(s)	478
BssECI	CCNNGG	1 cut(s)	371
BssMI	GATC	1 cut(s)	362
BssSI	CACGAG	2 cut(s)	645, 756
Bst2BI	CACGAG	2 cut(s)	645, 756
Bst2UI	CCWGG	2 cut(s)	270, 372
Bst4CI	ACNGT	2 cut(s)	56, 703
Bst6I	CTCTTC	2 cut(s)	284, 776
BstAFI	CTTAAG	1 cut(s)	596
BstAPI	GCANNNNNTGC	1 cut(s)	827
BstAUI	TGTACA	1 cut(s)	692
BstC8I	GCNNGC	1 cut(s)	819
BstDEI	CTNAG	2 cut(s)	431, 620
BstKTI	GATC	1 cut(s)	365
BstMAI	GTCTC	3 cut(s)	62, 172, 533
BstMBI	GATC	1 cut(s)	362
BstMWI	GCNNNNNNNGC	5 cut(s)	227, 794, 800, 803, 827
BstNI	CCWGG	2 cut(s)	270, 372
BstSCI	CCNGG	3 cut(s)	268, 370, 709
BstSFI	CTRYAG	2 cut(s)	312, 789
BstV1I	GCAGC	4 cut(s)	775, 803, 806, 815
BstV2I	GAAGAC	1 cut(s)	413
BtsIMutI	CAGTG	1 cut(s)	699
Cac8I	GCNNGC	1 cut(s)	819
CaiI	CAGNNNCTG	1 cut(s)	827
Cfr10I	RCCGGY	1 cut(s)	478
Cfr13I	GGNCC	2 cut(s)	260, 368
Csp6I	GTAC	2 cut(s)	609, 693
CspAI	ACCGGT	1 cut(s)	478
CviAII	CATG	1 cut(s)	625
CviQI	GTAC	2 cut(s)	609, 693
DdeI	CTNAG	2 cut(s)	431, 620
DpnI	GATC	1 cut(s)	364
DpnII	GATC	1 cut(s)	362
Eam1104I	CTCTTC	2 cut(s)	284, 776
EarI	CTCTTC	2 cut(s)	284, 776
Eco31I	GGTCTC	1 cut(s)	172
Eco47I	GGWCC	2 cut(s)	260, 368
Eco57I	CTGAAG	3 cut(s)	555, 669, 795
EcoO109I	RGGNCCY	1 cut(s)	368
EcoRII	CCWGG	2 cut(s)	268, 370
Esp3I	CGTCTC	1 cut(s)	62
FaeI	CATG	1 cut(s)	628
FaiI	YATR	5 cut(s)	344, 380, 452, 497, 626
FalI	AAGNNNNNCTT	4 cut(s)	620, 652, 660, 692
FatI	CATG	1 cut(s)	624
FauI	CCCGC	1 cut(s)	50
Fnu4HI	GCNGC	6 cut(s)	207, 789, 792, 795, 804, 822
Fsp4HI	GCNGC	6 cut(s)	207, 789, 792, 795, 804, 822
GluI	GCNGC	6 cut(s)	207, 789, 792, 795, 804, 822
GsaI	CCCAGC	1 cut(s)	510
GsuI	CTGGAG	1 cut(s)	465
HapII	CCGG	3 cut(s)	233, 479, 710
Hin1II	CATG	1 cut(s)	628
HindIII	AAGCTT	2 cut(s)	674, 681
HinfI	GANTC	4 cut(s)	121, 240, 438, 601
HpaII	CCGG	3 cut(s)	233, 479, 710
HphI	GGTGA	2 cut(s)	28, 625
Hpy166II	GTNNAC	1 cut(s)	695
Hpy188I	TCNGA	4 cut(s)	120, 132, 354, 814
Hpy188III	TCNNGA	4 cut(s)	233, 360, 459, 515
Hpy8I	GTNNAC	1 cut(s)	695
Hpy99I	CGWCG	3 cut(s)	217, 220, 420
HpyAV	CCTTC	4 cut(s)	386, 579, 646, 661
HpyCH4III	ACNGT	2 cut(s)	56, 703
HpyCH4IV	ACGT	1 cut(s)	212
HpyCH4V	TGCA	3 cut(s)	314, 743, 791
HpyF10VI	GCNNNNNNNGC	5 cut(s)	227, 794, 800, 803, 827
HpyF3I	CTNAG	2 cut(s)	431, 620
HpySE526I	ACGT	1 cut(s)	212
Hsp92II	CATG	1 cut(s)	628
Kpn2I	TCCGGA	1 cut(s)	232
Kzo9I	GATC	1 cut(s)	362
LmnI	GCTCC	2 cut(s)	235, 323
Lsp1109I	GCAGC	4 cut(s)	775, 803, 806, 815
MaeII	ACGT	1 cut(s)	212
MaeIII	GTNAC	1 cut(s)	50
MalI	GATC	1 cut(s)	364
MboI	GATC	1 cut(s)	362
MboII	GAAGA	6 cut(s)	60, 292, 301, 413, 726, 793
MluCI	AATT	1 cut(s)	170
MroI	TCCGGA	1 cut(s)	232
MseI	TTAA	6 cut(s)	150, 483, 564, 597, 729, 832
MspA1I	CMGCKG	1 cut(s)	506
MspCI	CTTAAG	1 cut(s)	596
MspI	CCGG	3 cut(s)	233, 479, 710
MspR9I	CCNGG	3 cut(s)	270, 372, 711
MvaI	CCWGG	2 cut(s)	270, 372
MwoI	GCNNNNNNNGC	5 cut(s)	227, 794, 800, 803, 827
NciI	CCSGG	1 cut(s)	711
NdeII	GATC	1 cut(s)	362
NlaIII	CATG	1 cut(s)	628
NlaIV	GGNNCC	1 cut(s)	369
PcsI	WCGNNNNNNNCGW	1 cut(s)	209
PfeI	GAWTC	4 cut(s)	121, 240, 438, 601
PinAI	ACCGGT	1 cut(s)	478
PkrI	GCNGC	6 cut(s)	208, 790, 793, 796, 805, 823
PpuMI	RGGWCCY	1 cut(s)	368
PshBI	ATTAAT	1 cut(s)	564
Psp5II	RGGWCCY	1 cut(s)	368
Psp6I	CCWGG	2 cut(s)	268, 370
PspFI	CCCAGC	1 cut(s)	506
PspGI	CCWGG	2 cut(s)	268, 370
PspN4I	GGNNCC	1 cut(s)	369
PspPI	GGNCC	2 cut(s)	260, 368
PspPPI	RGGWCCY	1 cut(s)	368
PstI	CTGCAG	2 cut(s)	316, 793
PstNI	CAGNNNCTG	1 cut(s)	827
PvuII	CAGCTG	1 cut(s)	506
RsaI	GTAC	2 cut(s)	610, 694
RsaNI	GTAC	2 cut(s)	609, 693
SaqAI	TTAA	6 cut(s)	150, 483, 564, 597, 729, 832
SatI	GCNGC	6 cut(s)	207, 789, 792, 795, 804, 822
Sau3AI	GATC	1 cut(s)	362
Sau96I	GGNCC	2 cut(s)	260, 368
ScrFI	CCNGG	3 cut(s)	270, 372, 711
SfcI	CTRYAG	2 cut(s)	312, 789
SinI	GGWCC	2 cut(s)	260, 368
SmlI	CTYRAG	1 cut(s)	596
SmoI	CTYRAG	1 cut(s)	596
Sse9I	AATT	1 cut(s)	170
SsiI	CCGC	2 cut(s)	43, 206
StyD4I	CCNGG	3 cut(s)	268, 370, 709
TaaI	ACNGT	2 cut(s)	56, 703
TaiI	ACGT	1 cut(s)	215
TaqI	TCGA	1 cut(s)	275
TasI	AATT	1 cut(s)	170
TatI	WGTACW	1 cut(s)	692
TauI	GCSGC	1 cut(s)	209
TfiI	GAWTC	4 cut(s)	121, 240, 438, 601
Tru1I	TTAA	6 cut(s)	150, 483, 564, 597, 729, 832
Tru9I	TTAA	6 cut(s)	150, 483, 564, 597, 729, 832
TscAI	CASTG	1 cut(s)	706
TseI	GCWGC	5 cut(s)	788, 791, 794, 803, 821
TspDTI	ATGAA	4 cut(s)	66, 540, 641, 780
TspGWI	ACGGA	1 cut(s)	233
TspRI	CASTG	1 cut(s)	706
Vha464I	CTTAAG	1 cut(s)	596
VpaK11BI	GGWCC	2 cut(s)	260, 368
VspI	ATTAAT	1 cut(s)	564

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.