Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000005

Orthogroup ID

OG0014321

Physical Location & Seq

Genomic Coordinates Forward (+)

57030774 .. 57033291

Gene Structure 2518 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_5G00376320.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 792 bp

ATGGCAGCGTCCCCGCTCTTTCTTTCTTCAAGCCCCGCCCTGCGTTTCCCTTCCTCGCCATTCAAGGGAAATGTGAGCAACTTGAGGCCAAGCTTATGTTCAATCCCCTCGCTCAAGACGACGAAGACGACTCCTCAGAGAAGACAGCTGGTGGTTGTGAACAAGGCGGCCGCGGCGGTAGTCGGGGCTCCGACTGGGAACGTCCGGTTCAGGCTGGACAACTTGGGCCCGCAACCCGGGTCCAGAAAGAAGGGTAAGAGAAAGGGAAGAGGTATTGCTGCTGGGCAAGGCAACAGCTGCGGGTTCGGTATGCGGGGACAGAAGTCCCGGTCCGGACCGGGTGTCCGGCCCGGATTTGAAGGTGGACAGATGCCGCTCTATCGTCGAATTCCCAAGCTCAAGGGAATTGCTGGAGGTATGCGAAAGGGGTTGCCTAAATATGTGCCTGTGAACTTGAAAGATATAGAAGACGCAGGGTTTGAAGAAGGAGAAGAAGTTTCGTTAGAAAGTTTGAAGGACAAGGGGTTGATCAACCCGTCGGGGAGAGAGAGGAAACTCCCTTTGAAGATTCTTGGTGATGGGGAACTCAAAGTGAAGCTGAGCTTTAAGGCTCGGGCATTTTCTGCAGCGGCGAAGGAGAAGCTGGAGGCTGCTGGCTGTAGTCTCACTGTTTTACCGGGCCGGAAGAAGTGGGTAAAGCCATCAGTTGCTAAGAACATTGCCCGTGCTGACGAATACTTTGCCAAGAAAAGAGCAGCCGCAGCTGCTGCTGCTGAATCACCATCTGCTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000311 GO:0000313 GO:0000315 GO:0003674 GO:0003735 GO:0005198 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005840 GO:0006412 GO:0006518 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009507 GO:0009526 GO:0009532 GO:0009536 GO:0009547 GO:0009570 GO:0009719 GO:0009725 GO:0009735 GO:0009941 GO:0009987 GO:0010033 GO:0010467 GO:0015934 GO:0019538 GO:0031967 GO:0031975 GO:0032991 GO:0034641 GO:0034645 GO:0042221 GO:0043043 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044391 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0050896 GO:0071704 GO:1901564 GO:1901566 GO:1901576 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosomal_L27A

Protein Analysis

263

Amino Acids

27.83

Weight (kDa)

10.65

Isoelectric Point (pI)

45.53

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ribosomal_L27A	PF00828	149 - 222	1.7e-15	Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0014321)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G25920
fragaria_vesca	FvH4_4g27310
malus_domestica	MD13G1041400.v1.1 MD16G1042300.v1.1
prunus_persica	Prupe.1G311800_v2.0.a1 Prupe.1G311800_v2.0.a1
pyrus_communis	pycom13g03590
rosa_chinensis	RchiOBHm_Chr4g0435111
rosa_laevigata	RLG00000006619
rosa_multiflora	Rmu_sc0000400.1_g000009
rosa_roxburghii	Rroxscaffold_5G00376320
rosa_rugosa	Rorug04G0282400
rosa_samantha	Rh4AG337900 Rh4BG346000 Rh4CG360500 Rh4DG340400
rosa_wichuraiana	Rw4G029460

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	2 cut(s)	16, 376
AccII	CGCG	1 cut(s)	173
AccIII	TCCGGA	1 cut(s)	332
AcoI	YGGCCR	1 cut(s)	168
AcsI	RAATTY	1 cut(s)	387
AfiI	CCNNNNNNNGG	2 cut(s)	65, 236
AgsI	TTSAA	8 cut(s)	30, 64, 102, 359, 457, 482, 514, 565
AhdI	GACNNNNNGTC	1 cut(s)	341
AjuI	GAANNNNNNNTTGG	2 cut(s)	82, 114
AluBI	AGCT	8 cut(s)	93, 148, 297, 397, 598, 603, 643, 764
AluI	AGCT	8 cut(s)	93, 148, 297, 397, 598, 603, 643, 764
Alw26I	GTCTC	1 cut(s)	668
AlwNI	CAGNNNCTG	1 cut(s)	767
Ama87I	CYCGRG	2 cut(s)	236, 612
Aor13HI	TCCGGA	1 cut(s)	332
AoxI	GGCC	5 cut(s)	86, 168, 226, 347, 679
ApaI	GGGCCC	1 cut(s)	230
ApoI	RAATTY	1 cut(s)	387
ArsI	GACNNNNNNTTYG	4 cut(s)	461, 493, 722, 754
AspS9I	GGNCC	7 cut(s)	226, 227, 240, 330, 335, 348, 679
AsuC2I	CCSGG	6 cut(s)	237, 238, 328, 339, 351, 678
AsuHPI	GGTGA	2 cut(s)	587, 771
AvaI	CYCGRG	2 cut(s)	236, 612
AvaII	GGWCC	3 cut(s)	240, 330, 335
BaeGI	GKGCMC	1 cut(s)	230
BanII	GRGCYC	2 cut(s)	190, 230
BbsI	GAAGAC	3 cut(s)	131, 148, 474
BccI	CCATC	3 cut(s)	572, 709, 790
BcgI	CGANNNNNNTGC	2 cut(s)	722, 756
BclI	TGATCA	1 cut(s)	528
BcnI	CCSGG	6 cut(s)	237, 238, 328, 339, 351, 678
BcoDI	GTCTC	1 cut(s)	668
BfmI	CTRYAG	2 cut(s)	624, 658
BlpI	GCTNAGC	1 cut(s)	599
Bme1390I	CCNGG	6 cut(s)	237, 238, 328, 339, 351, 678
Bme18I	GGWCC	3 cut(s)	240, 330, 335
BmeRI	GACNNNNNGTC	1 cut(s)	341
BmeT110I	CYCGRG	2 cut(s)	236, 612
BmgT120I	GGNCC	7 cut(s)	226, 227, 240, 330, 335, 348, 679
BmiI	GGNNCC	3 cut(s)	189, 228, 241
BmrFI	CCNGG	6 cut(s)	237, 238, 328, 339, 351, 678
BmrI	ACTGGG	1 cut(s)	204
BmsI	GCATC	1 cut(s)	360
BmuI	ACTGGG	1 cut(s)	204
BoxI	GACNNNNGTC	1 cut(s)	322
BpiI	GAAGAC	3 cut(s)	131, 148, 474
BpmI	CTGGAG	2 cut(s)	432, 665
Bpu1102I	GCTNAGC	1 cut(s)	599
BpuEI	CTTGAG	3 cut(s)	98, 103, 383
BpuMI	CCSGG	6 cut(s)	237, 238, 328, 339, 351, 678
BsaJI	CCNNGG	2 cut(s)	171, 236
BsaWI	WCCGGW	2 cut(s)	204, 332
BsaXI	ACNNNNNCTCC	2 cut(s)	480, 510
Bsc4I	CCNNNNNNNGG	2 cut(s)	65, 236
Bse1I	ACTGG	1 cut(s)	199
Bse3DI	GCAATG	1 cut(s)	717
BseAI	TCCGGA	1 cut(s)	332
BseDI	CCNNGG	2 cut(s)	171, 236
BseLI	CCNNNNNNNGG	2 cut(s)	65, 236
BseMI	GCAATG	1 cut(s)	717
BseMII	CTCAG	2 cut(s)	149, 590
BseNI	ACTGG	1 cut(s)	199
BseRI	GAGGAG	1 cut(s)	123
BseSI	GKGCMC	1 cut(s)	230
BseX3I	CGGCCG	1 cut(s)	168
BseYI	CCCAGC	1 cut(s)	281
Bsh1236I	CGCG	1 cut(s)	173
Bsh1285I	CGRYCG	1 cut(s)	171
BshFI	GGCC	5 cut(s)	88, 170, 228, 349, 681
BsiEI	CGRYCG	1 cut(s)	171
BsiHKCI	CYCGRG	2 cut(s)	236, 612
BsiSI	CCGG	9 cut(s)	205, 237, 328, 333, 338, 346, 351, 677, 682
BslFI	GGGAC	2 cut(s)	310, 330
BslI	CCNNNNNNNGG	2 cut(s)	65, 236
BsmAI	GTCTC	1 cut(s)	668
BsmFI	GGGAC	2 cut(s)	310, 330
BsnI	GGCC	5 cut(s)	88, 170, 228, 349, 681
BsoBI	CYCGRG	2 cut(s)	236, 612
Bsp120I	GGGCCC	1 cut(s)	226
Bsp1286I	GDGCHC	2 cut(s)	190, 230
Bsp13I	TCCGGA	1 cut(s)	332
Bsp143I	GATC	1 cut(s)	528
Bsp1720I	GCTNAGC	1 cut(s)	599
BspANI	GGCC	5 cut(s)	88, 170, 228, 349, 681
BspCNI	CTCAG	2 cut(s)	148, 591
BspEI	TCCGGA	1 cut(s)	332
BspFNI	CGCG	1 cut(s)	173
BspLI	GGNNCC	3 cut(s)	189, 228, 241
BspMAI	CTGCAG	1 cut(s)	628
BsrBI	CCGCTC	2 cut(s)	16, 376
BsrDI	GCAATG	1 cut(s)	717
BsrI	ACTGG	1 cut(s)	199
BssECI	CCNNGG	2 cut(s)	171, 236
BssMI	GATC	1 cut(s)	528
Bst4CI	ACNGT	1 cut(s)	670
Bst6I	CTCTTC	1 cut(s)	262
BstAPI	GCANNNNNTGC	3 cut(s)	297, 623, 767
BstC8I	GCNNGC	2 cut(s)	230, 655
BstDEI	CTNAG	4 cut(s)	135, 599, 711, 789
BstDSI	CCRYGG	1 cut(s)	171
BstFNI	CGCG	1 cut(s)	173
BstKTI	GATC	1 cut(s)	531
BstMAI	GTCTC	1 cut(s)	668
BstMBI	GATC	1 cut(s)	528
BstMCI	CGRYCG	1 cut(s)	171
BstMWI	GCNNNNNNNGC	7 cut(s)	173, 297, 623, 761, 764, 767, 770
BstPAI	GACNNNNGTC	1 cut(s)	322
BstSCI	CCNGG	6 cut(s)	235, 236, 326, 337, 349, 676
BstSFI	CTRYAG	2 cut(s)	624, 658
BstSLI	GKGCMC	1 cut(s)	230
BstUI	CGCG	1 cut(s)	173
BstV2I	GAAGAC	3 cut(s)	131, 148, 474
BstZI	CGGCCG	1 cut(s)	168
BsuRI	GGCC	5 cut(s)	88, 170, 228, 349, 681
BtgI	CCRYGG	1 cut(s)	171
BtsIMutI	CAGTG	1 cut(s)	666
Cac8I	GCNNGC	2 cut(s)	230, 655
CaiI	CAGNNNCTG	1 cut(s)	767
CciNI	GCGGCCGC	1 cut(s)	168
Cfr13I	GGNCC	7 cut(s)	226, 227, 240, 330, 335, 348, 679
Cfr42I	CCGCGG	1 cut(s)	174
Cfr9I	CCCGGG	1 cut(s)	236
CpoI	CGGWCCG	2 cut(s)	330, 335
CseI	GACGC	1 cut(s)	479
CspI	CGGWCCG	2 cut(s)	330, 335
DdeI	CTNAG	4 cut(s)	135, 599, 711, 789
DpnI	GATC	1 cut(s)	530
DpnII	GATC	1 cut(s)	528
DriI	GACNNNNNGTC	1 cut(s)	341
EaeI	YGGCCR	1 cut(s)	168
EagI	CGGCCG	1 cut(s)	168
Eam1104I	CTCTTC	1 cut(s)	262
Eam1105I	GACNNNNNGTC	1 cut(s)	341
EarI	CTCTTC	1 cut(s)	262
EclXI	CGGCCG	1 cut(s)	168
Eco24I	GRGCYC	2 cut(s)	190, 230
Eco47I	GGWCC	3 cut(s)	240, 330, 335
Eco52I	CGGCCG	1 cut(s)	168
Eco88I	CYCGRG	2 cut(s)	236, 612
EcoRI	GAATTC	1 cut(s)	387
EcoT38I	GRGCYC	2 cut(s)	190, 230
FaiI	YATR	5 cut(s)	97, 311, 419, 441, 464
FalI	AAGNNNNNCTT	2 cut(s)	587, 619
FaqI	GGGAC	2 cut(s)	310, 330
FauI	CCCGC	5 cut(s)	21, 43, 237, 293, 306
FbaI	TGATCA	1 cut(s)	528
FriOI	GRGCYC	2 cut(s)	190, 230
GsaI	CCCAGC	1 cut(s)	285
GsuI	CTGGAG	2 cut(s)	432, 665
HaeIII	GGCC	5 cut(s)	88, 170, 228, 349, 681
HapII	CCGG	9 cut(s)	205, 237, 328, 333, 338, 346, 351, 677, 682
HgaI	GACGC	1 cut(s)	479
HindIII	AAGCTT	1 cut(s)	91
HinfI	GANTC	3 cut(s)	130, 568, 776
HpaII	CCGG	9 cut(s)	205, 237, 328, 333, 338, 346, 351, 677, 682
HphI	GGTGA	2 cut(s)	587, 771
Hpy166II	GTNNAC	3 cut(s)	160, 365, 451
Hpy188I	TCNGA	2 cut(s)	138, 192
Hpy188III	TCNNGA	3 cut(s)	115, 243, 333
Hpy8I	GTNNAC	3 cut(s)	160, 365, 451
Hpy99I	CGWCG	3 cut(s)	124, 387, 541
HpyAV	CCTTC	6 cut(s)	60, 244, 353, 479, 508, 628
HpyCH4III	ACNGT	1 cut(s)	670
HpyCH4IV	ACGT	1 cut(s)	201
HpyCH4V	TGCA	1 cut(s)	626
HpyF10VI	GCNNNNNNNGC	7 cut(s)	173, 297, 623, 761, 764, 767, 770
HpyF3I	CTNAG	4 cut(s)	135, 599, 711, 789
HpySE526I	ACGT	1 cut(s)	201
Kpn2I	TCCGGA	1 cut(s)	332
Ksp22I	TGATCA	1 cut(s)	528
KspI	CCGCGG	1 cut(s)	174
Kzo9I	GATC	1 cut(s)	528
LmnI	GCTCC	1 cut(s)	193
LweI	GCATC	1 cut(s)	360
MaeII	ACGT	1 cut(s)	201
MalI	GATC	1 cut(s)	530
MbiI	CCGCTC	2 cut(s)	16, 376
MboI	GATC	1 cut(s)	528
MboII	GAAGA	9 cut(s)	18, 136, 153, 279, 479, 494, 503, 577, 697
MhlI	GDGCHC	2 cut(s)	190, 230
MluCI	AATT	2 cut(s)	387, 405
MlyI	GAGTC	1 cut(s)	124
MmeI	TCCRAC	1 cut(s)	215
MnlI	CCTC	8 cut(s)	64, 78, 118, 144, 263, 407, 543, 640
MroI	TCCGGA	1 cut(s)	332
MseI	TTAA	1 cut(s)	606
MspA1I	CMGCKG	5 cut(s)	148, 173, 297, 629, 764
MspI	CCGG	9 cut(s)	205, 237, 328, 333, 338, 346, 351, 677, 682
MspR9I	CCNGG	6 cut(s)	237, 238, 328, 339, 351, 678
MvnI	CGCG	1 cut(s)	173
MwoI	GCNNNNNNNGC	7 cut(s)	173, 297, 623, 761, 764, 767, 770
NciI	CCSGG	6 cut(s)	237, 238, 328, 339, 351, 678
NdeII	GATC	1 cut(s)	528
NlaIV	GGNNCC	3 cut(s)	189, 228, 241
NotI	GCGGCCGC	1 cut(s)	168
PcsI	WCGNNNNNNNCGW	2 cut(s)	116, 125
PfeI	GAWTC	2 cut(s)	568, 776
PleI	GAGTC	1 cut(s)	124
PpsI	GAGTC	1 cut(s)	124
PshAI	GACNNNNGTC	1 cut(s)	322
PspFI	CCCAGC	1 cut(s)	281
PspN4I	GGNNCC	3 cut(s)	189, 228, 241
PspOMI	GGGCCC	1 cut(s)	226
PspPI	GGNCC	7 cut(s)	226, 227, 240, 330, 335, 348, 679
PstI	CTGCAG	1 cut(s)	628
PstNI	CAGNNNCTG	1 cut(s)	767
PvuII	CAGCTG	3 cut(s)	148, 297, 764
Rsr2I	CGGWCCG	2 cut(s)	330, 335
RsrII	CGGWCCG	2 cut(s)	330, 335
SacII	CCGCGG	1 cut(s)	174
SaqAI	TTAA	1 cut(s)	606
Sau3AI	GATC	1 cut(s)	528
Sau96I	GGNCC	7 cut(s)	226, 227, 240, 330, 335, 348, 679
SchI	GAGTC	1 cut(s)	124
ScrFI	CCNGG	6 cut(s)	237, 238, 328, 339, 351, 678
SduI	GDGCHC	2 cut(s)	190, 230
SfaNI	GCATC	1 cut(s)	360
SfcI	CTRYAG	2 cut(s)	624, 658
Sfr303I	CCGCGG	1 cut(s)	174
SgrBI	CCGCGG	1 cut(s)	174
SinI	GGWCC	3 cut(s)	240, 330, 335
SmaI	CCCGGG	1 cut(s)	238
SmlI	CTYRAG	3 cut(s)	82, 113, 398
SmoI	CTYRAG	3 cut(s)	82, 113, 398
Sse9I	AATT	2 cut(s)	387, 405
StyD4I	CCNGG	6 cut(s)	235, 236, 326, 337, 349, 676
TaaI	ACNGT	1 cut(s)	670
TaiI	ACGT	1 cut(s)	204
TaqI	TCGA	1 cut(s)	385
TasI	AATT	2 cut(s)	387, 405
TauI	GCSGC	6 cut(s)	170, 173, 176, 376, 632, 761
TfiI	GAWTC	2 cut(s)	568, 776
Tru1I	TTAA	1 cut(s)	606
Tru9I	TTAA	1 cut(s)	606
TscAI	CASTG	1 cut(s)	673
TspMI	CCCGGG	1 cut(s)	236
TspRI	CASTG	1 cut(s)	673
VpaK11BI	GGWCC	3 cut(s)	240, 330, 335
XapI	RAATTY	1 cut(s)	387
XmaI	CCCGGG	1 cut(s)	236

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.