Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr13

Orthogroup ID

OG0014321

Physical Location & Seq

Genomic Coordinates Forward (+)

2842430 .. 2844403

Gene Structure 1974 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD13G1041400.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 819 bp

ATGGCAACCTCCCTGCTCTTTCTTCCTCCAGCTCCACCTCTCAGCTTTCCTTCTTCCTCCTTCAAGGCATTCTCTTTCTCTCAAGCTTTCTCTGGAAATGCGAGAAACTTGGGGCAAAAACTGTGTAGAGTTCCCTCCGTCAAGGTGATCGGAGCTACAGAAAGAAGACCACTGGTGATTTTGAATAAGGCGGCGGCGTCCACCGTCGGGGCTCCGGTCGGCAATGTGCGGTTCAGGCTGGACAATTTGGGCCCGCAACCCGGGTCCAGAAAGAAGGGCAAGAGAAAGGGAAGAGGTATAGCAGCCGGGCAAGGGAACAGCTGCGGGTTCGGTATGCGGGGACAGAAGTCTCGGTCCGGACCCGGCGTCCGCCCTGGATTTGAAGGCGGTCAGATGCCGCTTTACCGTCGACTTCCCAAACTTAAGGGAATTGCTGGAGGTATGAGTGCGGGGCTACCGAAGTATGTCCCTGTTAACTTGAAAGACATAGAAGCCGCAGGGTTTCAAGAAGGCGAAGAAGTGTCATTGCAAACTTTGAAGAACAAGGGTCTGATCAACCCATCCGGAAGAGAACGGAAACTCCCTTTGAAGATTCTTGGTGATGGGGAGCTAAGTGTGAAGCTGGATATAAAGGCACGTGCCTTCTCAGCAGCAGCAAAGGAGAAACTAGAGGCTGCTGGGTGCAACCTCACTGTATTGCCGGGTAGGAAGAAGTGGGTAAAGCCATCGGTTGCCAAGAACCTTGCACGCGCTGATGAATACTTTGCCAAGAAACGAGCTGCTGCTGCTGCTGCTGCAACTGATTCTGTGTCTGCGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000311 GO:0000313 GO:0000315 GO:0003674 GO:0003735 GO:0005198 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005840 GO:0006412 GO:0006518 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009507 GO:0009526 GO:0009532 GO:0009536 GO:0009547 GO:0009570 GO:0009719 GO:0009725 GO:0009735 GO:0009941 GO:0009987 GO:0010033 GO:0010467 GO:0015934 GO:0019538 GO:0031967 GO:0031975 GO:0032991 GO:0034641 GO:0034645 GO:0042221 GO:0043043 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044391 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0050896 GO:0071704 GO:1901564 GO:1901566 GO:1901576 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosomal_L27A

Protein Analysis

273

Amino Acids

28.59

Weight (kDa)

10.71

Isoelectric Point (pI)

41.48

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ribosomal_L27A	PF00828	157 - 229	1.9e-15	Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0014321)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G25920
fragaria_vesca	FvH4_4g27310
malus_domestica	MD13G1041400.v1.1 MD16G1042300.v1.1
prunus_persica	Prupe.1G311800_v2.0.a1 Prupe.1G311800_v2.0.a1
pyrus_communis	pycom13g03590
rosa_chinensis	RchiOBHm_Chr4g0435111
rosa_laevigata	RLG00000006619
rosa_multiflora	Rmu_sc0000400.1_g000009
rosa_roxburghii	Rroxscaffold_5G00376320
rosa_rugosa	Rorug04G0282400
rosa_samantha	Rh4AG337900 Rh4BG346000 Rh4CG360500 Rh4DG340400
rosa_wichuraiana	Rw4G029460

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	409
AccII	CGCG	1 cut(s)	750
AccIII	TCCGGA	2 cut(s)	356, 563
AcvI	CACGTG	1 cut(s)	638
AcyI	GRCGYC	2 cut(s)	197, 366
AfiI	CCNNNNNNNGG	3 cut(s)	207, 260, 312
AflII	CTTAAG	1 cut(s)	422
AgsI	TTSAA	7 cut(s)	64, 184, 383, 481, 506, 538, 589
AhdI	GACNNNNNGTC	1 cut(s)	365
AjnI	CCWGG	1 cut(s)	373
AloI	GAACNNNNNNTCC	2 cut(s)	564, 596
AluBI	AGCT	8 cut(s)	32, 45, 86, 155, 321, 610, 622, 779
AluI	AGCT	8 cut(s)	32, 45, 86, 155, 321, 610, 622, 779
Alw26I	GTCTC	1 cut(s)	354
Ama87I	CYCGRG	1 cut(s)	260
Aor13HI	TCCGGA	2 cut(s)	356, 563
AoxI	GGCC	1 cut(s)	250
ApaI	GGGCCC	1 cut(s)	254
AspLEI	GCGC	1 cut(s)	752
AspS9I	GGNCC	5 cut(s)	250, 251, 264, 354, 359
AsuC2I	CCSGG	5 cut(s)	261, 262, 307, 363, 702
AsuHPI	GGTGA	3 cut(s)	157, 187, 611
AvaI	CYCGRG	1 cut(s)	260
AvaII	GGWCC	3 cut(s)	264, 354, 359
BaeGI	GKGCMC	1 cut(s)	254
BanII	GRGCYC	2 cut(s)	214, 254
BbrPI	CACGTG	1 cut(s)	638
BbsI	GAAGAC	1 cut(s)	172
BccI	CCATC	3 cut(s)	568, 596, 733
BciT130I	CCWGG	1 cut(s)	375
BclI	TGATCA	1 cut(s)	552
BcnI	CCSGG	5 cut(s)	261, 262, 307, 363, 702
BcoDI	GTCTC	1 cut(s)	354
BfaI	CTAG	1 cut(s)	668
BfmI	CTRYAG	1 cut(s)	156
BfrI	CTTAAG	1 cut(s)	422
Bme1390I	CCNGG	6 cut(s)	261, 262, 307, 363, 375, 702
Bme18I	GGWCC	3 cut(s)	264, 354, 359
BmeRI	GACNNNNNGTC	1 cut(s)	365
BmeT110I	CYCGRG	1 cut(s)	260
BmgT120I	GGNCC	5 cut(s)	250, 251, 264, 354, 359
BmiI	GGNNCC	4 cut(s)	213, 252, 265, 361
BmrFI	CCNGG	6 cut(s)	261, 262, 307, 363, 375, 702
BmsI	GCATC	1 cut(s)	384
BoxI	GACNNNNGTC	1 cut(s)	346
BpiI	GAAGAC	1 cut(s)	172
BpmI	CTGGAG	2 cut(s)	12, 456
BpuEI	CTTGAG	1 cut(s)	66
BpuMI	CCSGG	5 cut(s)	261, 262, 307, 363, 702
BsaAI	YACGTR	1 cut(s)	638
BsaHI	GRCGYC	2 cut(s)	197, 366
BsaJI	CCNNGG	2 cut(s)	260, 373
BsaWI	WCCGGW	3 cut(s)	214, 356, 563
BsaXI	ACNNNNNCTCC	2 cut(s)	564, 594
Bsc4I	CCNNNNNNNGG	3 cut(s)	207, 260, 312
Bse1I	ACTGG	1 cut(s)	177
Bse3DI	GCAATG	2 cut(s)	229, 524
BseAI	TCCGGA	2 cut(s)	356, 563
BseBI	CCWGG	1 cut(s)	375
BseDI	CCNNGG	2 cut(s)	260, 373
BseGI	GGATG	1 cut(s)	560
BseLI	CCNNNNNNNGG	3 cut(s)	207, 260, 312
BseMI	GCAATG	2 cut(s)	229, 524
BseMII	CTCAG	2 cut(s)	55, 660
BseNI	ACTGG	1 cut(s)	177
BseSI	GKGCMC	1 cut(s)	254
BseYI	CCCAGC	1 cut(s)	677
Bsh1236I	CGCG	1 cut(s)	750
Bsh1285I	CGRYCG	1 cut(s)	219
BshFI	GGCC	1 cut(s)	252
BsiEI	CGRYCG	1 cut(s)	219
BsiHKCI	CYCGRG	1 cut(s)	260
BsiSI	CCGG	7 cut(s)	215, 261, 306, 357, 363, 564, 701
BslFI	GGGAC	2 cut(s)	354, 452
BslI	CCNNNNNNNGG	3 cut(s)	207, 260, 312
BsmAI	GTCTC	1 cut(s)	354
BsmFI	GGGAC	2 cut(s)	354, 452
BsmI	GAATGC	1 cut(s)	68
BsnI	GGCC	1 cut(s)	252
BsoBI	CYCGRG	1 cut(s)	260
Bsp120I	GGGCCC	1 cut(s)	250
Bsp1286I	GDGCHC	2 cut(s)	214, 254
Bsp13I	TCCGGA	2 cut(s)	356, 563
Bsp143I	GATC	2 cut(s)	147, 552
BspANI	GGCC	1 cut(s)	252
BspCNI	CTCAG	2 cut(s)	54, 659
BspEI	TCCGGA	2 cut(s)	356, 563
BspFNI	CGCG	1 cut(s)	750
BspLI	GGNNCC	4 cut(s)	213, 252, 265, 361
BspTI	CTTAAG	1 cut(s)	422
BsrDI	GCAATG	2 cut(s)	229, 524
BsrI	ACTGG	1 cut(s)	177
BssECI	CCNNGG	2 cut(s)	260, 373
BssMI	GATC	2 cut(s)	147, 552
BssNI	GRCGYC	2 cut(s)	197, 366
Bst2UI	CCWGG	1 cut(s)	375
Bst4CI	ACNGT	4 cut(s)	123, 205, 407, 694
Bst6I	CTCTTC	2 cut(s)	286, 562
BstACI	GRCGYC	2 cut(s)	197, 366
BstAFI	CTTAAG	1 cut(s)	422
BstBAI	YACGTR	1 cut(s)	638
BstC8I	GCNNGC	2 cut(s)	254, 748
BstDEI	CTNAG	3 cut(s)	41, 611, 646
BstF5I	GGATG	1 cut(s)	560
BstFNI	CGCG	1 cut(s)	750
BstHHI	GCGC	1 cut(s)	752
BstKTI	GATC	2 cut(s)	150, 555
BstMAI	GTCTC	1 cut(s)	354
BstMBI	GATC	2 cut(s)	147, 552
BstMCI	CGRYCG	1 cut(s)	219
BstMWI	GCNNNNNNNGC	6 cut(s)	235, 647, 785, 788, 791, 794
BstNI	CCWGG	1 cut(s)	375
BstPAI	GACNNNNGTC	1 cut(s)	346
BstSCI	CCNGG	6 cut(s)	259, 260, 305, 361, 373, 700
BstSFI	CTRYAG	1 cut(s)	156
BstSLI	GKGCMC	1 cut(s)	254
BstUI	CGCG	1 cut(s)	750
BstV2I	GAAGAC	1 cut(s)	172
BsuRI	GGCC	1 cut(s)	252
BtsCI	GGATG	1 cut(s)	560
BtsIMutI	CAGTG	2 cut(s)	170, 690
Cac8I	GCNNGC	2 cut(s)	254, 748
CfoI	GCGC	1 cut(s)	752
Cfr13I	GGNCC	5 cut(s)	250, 251, 264, 354, 359
Cfr9I	CCCGGG	1 cut(s)	260
CpoI	CGGWCCG	1 cut(s)	354
CseI	GACGC	2 cut(s)	186, 355
CspI	CGGWCCG	1 cut(s)	354
DdeI	CTNAG	3 cut(s)	41, 611, 646
DpnI	GATC	2 cut(s)	149, 554
DpnII	GATC	2 cut(s)	147, 552
DriI	GACNNNNNGTC	1 cut(s)	365
Eam1104I	CTCTTC	2 cut(s)	286, 562
Eam1105I	GACNNNNNGTC	1 cut(s)	365
EarI	CTCTTC	2 cut(s)	286, 562
EciI	GGCGGA	1 cut(s)	359
Eco24I	GRGCYC	2 cut(s)	214, 254
Eco47I	GGWCC	3 cut(s)	264, 354, 359
Eco72I	CACGTG	1 cut(s)	638
Eco88I	CYCGRG	1 cut(s)	260
EcoRII	CCWGG	1 cut(s)	373
EcoT38I	GRGCYC	2 cut(s)	214, 254
FaiI	YATR	6 cut(s)	299, 335, 443, 465, 488, 629
FaqI	GGGAC	2 cut(s)	354, 452
FauI	CCCGC	4 cut(s)	261, 317, 330, 442
FbaI	TGATCA	1 cut(s)	552
FblI	GTMKAC	1 cut(s)	409
FokI	GGATG	1 cut(s)	547
FriOI	GRGCYC	2 cut(s)	214, 254
FspBI	CTAG	1 cut(s)	668
GlaI	GCGC	1 cut(s)	751
GsaI	CCCAGC	1 cut(s)	681
GsuI	CTGGAG	2 cut(s)	12, 456
HaeIII	GGCC	1 cut(s)	252
HapII	CCGG	7 cut(s)	215, 261, 306, 357, 363, 564, 701
HgaI	GACGC	2 cut(s)	186, 355
HhaI	GCGC	1 cut(s)	752
Hin1I	GRCGYC	2 cut(s)	197, 366
Hin6I	GCGC	1 cut(s)	750
HinP1I	GCGC	1 cut(s)	750
HincII	GTYRAC	2 cut(s)	410, 475
HindII	GTYRAC	2 cut(s)	410, 475
HindIII	AAGCTT	1 cut(s)	84
HinfI	GANTC	2 cut(s)	592, 803
HpaI	GTTAAC	1 cut(s)	475
HpaII	CCGG	7 cut(s)	215, 261, 306, 357, 363, 564, 701
HphI	GGTGA	3 cut(s)	157, 187, 611
Hpy166II	GTNNAC	3 cut(s)	201, 410, 475
Hpy188I	TCNGA	3 cut(s)	152, 393, 552
Hpy188III	TCNNGA	5 cut(s)	93, 267, 357, 506, 564
Hpy8I	GTNNAC	3 cut(s)	201, 410, 475
Hpy99I	CGWCG	2 cut(s)	209, 411
HpyAV	CCTTC	6 cut(s)	60, 70, 268, 377, 503, 652
HpyCH4III	ACNGT	4 cut(s)	123, 205, 407, 694
HpyCH4IV	ACGT	1 cut(s)	637
HpyCH4V	TGCA	4 cut(s)	529, 684, 746, 797
HpyF10VI	GCNNNNNNNGC	6 cut(s)	235, 647, 785, 788, 791, 794
HpyF3I	CTNAG	3 cut(s)	41, 611, 646
HpySE526I	ACGT	1 cut(s)	637
Hsp92I	GRCGYC	2 cut(s)	197, 366
HspAI	GCGC	1 cut(s)	750
Kpn2I	TCCGGA	2 cut(s)	356, 563
Ksp22I	TGATCA	1 cut(s)	552
KspAI	GTTAAC	1 cut(s)	475
Kzo9I	GATC	2 cut(s)	147, 552
LmnI	GCTCC	4 cut(s)	37, 152, 217, 607
LweI	GCATC	1 cut(s)	384
MaeI	CTAG	1 cut(s)	668
MaeII	ACGT	1 cut(s)	637
MalI	GATC	2 cut(s)	149, 554
MboI	GATC	2 cut(s)	147, 552
MboII	GAAGA	9 cut(s)	14, 45, 177, 303, 527, 550, 579, 601, 721
MhlI	GDGCHC	2 cut(s)	214, 254
MluCI	AATT	2 cut(s)	244, 429
MnlI	CCTC	9 cut(s)	19, 36, 48, 67, 145, 287, 431, 664, 698
MroI	TCCGGA	2 cut(s)	356, 563
MseI	TTAA	2 cut(s)	423, 474
MspA1I	CMGCKG	1 cut(s)	321
MspCI	CTTAAG	1 cut(s)	422
MspI	CCGG	7 cut(s)	215, 261, 306, 357, 363, 564, 701
MspR9I	CCNGG	6 cut(s)	261, 262, 307, 363, 375, 702
Mva1269I	GAATGC	1 cut(s)	68
MvaI	CCWGG	1 cut(s)	375
MvnI	CGCG	1 cut(s)	750
MwoI	GCNNNNNNNGC	6 cut(s)	235, 647, 785, 788, 791, 794
NciI	CCSGG	5 cut(s)	261, 262, 307, 363, 702
NdeII	GATC	2 cut(s)	147, 552
NlaIV	GGNNCC	4 cut(s)	213, 252, 265, 361
PctI	GAATGC	1 cut(s)	68
PfeI	GAWTC	2 cut(s)	592, 803
PmaCI	CACGTG	1 cut(s)	638
PmlI	CACGTG	1 cut(s)	638
Ppu21I	YACGTR	1 cut(s)	638
PshAI	GACNNNNGTC	1 cut(s)	346
Psp6I	CCWGG	1 cut(s)	373
PspCI	CACGTG	1 cut(s)	638
PspFI	CCCAGC	1 cut(s)	677
PspGI	CCWGG	1 cut(s)	373
PspN4I	GGNNCC	4 cut(s)	213, 252, 265, 361
PspOMI	GGGCCC	1 cut(s)	250
PspPI	GGNCC	5 cut(s)	250, 251, 264, 354, 359
PvuII	CAGCTG	1 cut(s)	321
Rsr2I	CGGWCCG	1 cut(s)	354
RsrII	CGGWCCG	1 cut(s)	354
SalI	GTCGAC	1 cut(s)	408
SaqAI	TTAA	2 cut(s)	423, 474
Sau3AI	GATC	2 cut(s)	147, 552
Sau96I	GGNCC	5 cut(s)	250, 251, 264, 354, 359
ScrFI	CCNGG	6 cut(s)	261, 262, 307, 363, 375, 702
SduI	GDGCHC	2 cut(s)	214, 254
SfaNI	GCATC	1 cut(s)	384
SfcI	CTRYAG	1 cut(s)	156
SinI	GGWCC	3 cut(s)	264, 354, 359
SmaI	CCCGGG	1 cut(s)	262
SmlI	CTYRAG	2 cut(s)	81, 422
SmoI	CTYRAG	2 cut(s)	81, 422
Sse9I	AATT	2 cut(s)	244, 429
SspMI	CTAG	1 cut(s)	668
StyD4I	CCNGG	6 cut(s)	259, 260, 305, 361, 373, 700
TaaI	ACNGT	4 cut(s)	123, 205, 407, 694
TaiI	ACGT	1 cut(s)	640
TaqI	TCGA	1 cut(s)	409
TaqII	GACCGA	1 cut(s)	342
TasI	AATT	2 cut(s)	244, 429
TauI	GCSGC	4 cut(s)	194, 197, 400, 497
TfiI	GAWTC	2 cut(s)	592, 803
Tru1I	TTAA	2 cut(s)	423, 474
Tru9I	TTAA	2 cut(s)	423, 474
TscAI	CASTG	2 cut(s)	177, 697
TspDTI	ATGAA	1 cut(s)	771
TspGWI	ACGGA	2 cut(s)	127, 589
TspMI	CCCGGG	1 cut(s)	260
TspRI	CASTG	2 cut(s)	177, 697
Vha464I	CTTAAG	1 cut(s)	422
VpaK11BI	GGWCC	3 cut(s)	264, 354, 359
XmaI	CCCGGG	1 cut(s)	260
XmiI	GTMKAC	1 cut(s)	409
XspI	CTAG	1 cut(s)	668

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.