Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr13

Orthogroup ID

OG0014321

Physical Location & Seq

Genomic Coordinates Forward (+)

2381958 .. 2383792

Gene Structure 1835 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom13g03590.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 783 bp

ATGGCAAACTCCCTGCTCTTTCTTCCTCCGGCTCCACCTCTCAGCTTTCCTTCTTCCTCTTTCAAGGGAAATGCGAGAAACTTGGGGCAAAAACTGTGTAGCGTTCCCTCCGTCAAGGTGACCGGAGCTACAGAAAGAAGACCACTGGTGATTTTGAATAAGGCGGCGGCGTCCACAGTCGGGGCTCCGGTCGGCAATGTGCGGTTCAGGCTGGACAATTTGGGCCCGCAGCCCGGGTCCAGAAAGAAGGGCAAGAGAAAGGGAAGAGGTATAGCAGCCGGGCAAGGGAACAGCTGCGGGTTCGGTATGCGGGGACAGAAGTCTCGGTCCGGACCCGGCGTCCGCCCTGGATTTGAAGGCGGTCAGATGCCGCTTTACCGTCGACTTCCCAAACTTAAGGGAATTGCTGGAGGTATGAGTGCGGGGCTACCGAAGTATGTCCCTGTTAACTTGAAAGACATAGAAGCCGCAGGGTTTCAAGAAGGCGAAGAAGTGTCATTGCAAACTTTGAAGAACAAGGGTTTGATCAACCCATCCGGAAGAGAACGGAAACTCCCCTTGAAGATTCTTGGTGATGGGGAGCTAAGTGTGAAGCTGGATATAAAGGCACGTGCCTTCTCAGCAGCGGCGAAGGAGAAACTAGAGGCTGCTGGCTGCAACCTCACTGTATTGCCGGGTAGGAAGAAGTGGGTAAAGCCATCGGTTGCCAAGAACCTTGCACGTGCTGATGAATACTTTGCCAAGAAACGAGCTGCTGCTGCAACCGATTCTGTGTCTGCATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000311 GO:0000313 GO:0000315 GO:0003674 GO:0003735 GO:0005198 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005840 GO:0006412 GO:0006518 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009507 GO:0009526 GO:0009532 GO:0009536 GO:0009547 GO:0009570 GO:0009719 GO:0009725 GO:0009735 GO:0009941 GO:0009987 GO:0010033 GO:0010467 GO:0015934 GO:0019538 GO:0031967 GO:0031975 GO:0032991 GO:0034641 GO:0034645 GO:0042221 GO:0043043 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044391 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0050896 GO:0071704 GO:1901564 GO:1901566 GO:1901576 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosomal_L27A

Protein Analysis

261

Amino Acids

27.34

Weight (kDa)

10.63

Isoelectric Point (pI)

41.21

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0014321)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G25920
fragaria_vesca	FvH4_4g27310
malus_domestica	MD13G1041400.v1.1 MD16G1042300.v1.1
prunus_persica	Prupe.1G311800_v2.0.a1 Prupe.1G311800_v2.0.a1
pyrus_communis	pycom13g03590
rosa_chinensis	RchiOBHm_Chr4g0435111
rosa_laevigata	RLG00000006619
rosa_multiflora	Rmu_sc0000400.1_g000009
rosa_roxburghii	Rroxscaffold_5G00376320
rosa_rugosa	Rorug04G0282400
rosa_samantha	Rh4AG337900 Rh4BG346000 Rh4CG360500 Rh4DG340400
rosa_wichuraiana	Rw4G029460

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	382
AccIII	TCCGGA	2 cut(s)	329, 536
AcvI	CACGTG	2 cut(s)	611, 722
AcyI	GRCGYC	2 cut(s)	170, 339
AfiI	CCNNNNNNNGG	3 cut(s)	180, 233, 285
AflII	CTTAAG	1 cut(s)	395
AgsI	TTSAA	7 cut(s)	64, 157, 356, 454, 479, 511, 562
AhdI	GACNNNNNGTC	1 cut(s)	338
AjnI	CCWGG	1 cut(s)	346
AloI	GAACNNNNNNTCC	2 cut(s)	537, 569
AluBI	AGCT	6 cut(s)	45, 128, 294, 583, 595, 752
AluI	AGCT	6 cut(s)	45, 128, 294, 583, 595, 752
Alw26I	GTCTC	1 cut(s)	327
Ama87I	CYCGRG	1 cut(s)	233
Aor13HI	TCCGGA	2 cut(s)	329, 536
AoxI	GGCC	1 cut(s)	223
ApaI	GGGCCC	1 cut(s)	227
ApeKI	GCWGC	9 cut(s)	229, 275, 294, 623, 647, 654, 752, 755, 758
AspS9I	GGNCC	5 cut(s)	223, 224, 237, 327, 332
AsuC2I	CCSGG	5 cut(s)	234, 235, 280, 336, 675
AsuHPI	GGTGA	3 cut(s)	130, 160, 584
AvaI	CYCGRG	1 cut(s)	233
AvaII	GGWCC	3 cut(s)	237, 327, 332
BaeGI	GKGCMC	1 cut(s)	227
BanII	GRGCYC	2 cut(s)	187, 227
BbrPI	CACGTG	2 cut(s)	611, 722
BbsI	GAAGAC	1 cut(s)	145
BbvI	GCAGC	9 cut(s)	241, 281, 287, 634, 635, 641, 739, 742, 745
BccI	CCATC	3 cut(s)	541, 569, 706
BciT130I	CCWGG	1 cut(s)	348
BclI	TGATCA	1 cut(s)	525
BcnI	CCSGG	5 cut(s)	234, 235, 280, 336, 675
BcoDI	GTCTC	1 cut(s)	327
BfaI	CTAG	1 cut(s)	641
BfmI	CTRYAG	1 cut(s)	129
BfrI	CTTAAG	1 cut(s)	395
Bme1390I	CCNGG	6 cut(s)	234, 235, 280, 336, 348, 675
Bme18I	GGWCC	3 cut(s)	237, 327, 332
BmeRI	GACNNNNNGTC	1 cut(s)	338
BmeT110I	CYCGRG	1 cut(s)	233
BmgT120I	GGNCC	5 cut(s)	223, 224, 237, 327, 332
BmiI	GGNNCC	5 cut(s)	33, 186, 225, 238, 334
BmrFI	CCNGG	6 cut(s)	234, 235, 280, 336, 348, 675
BmsI	GCATC	1 cut(s)	357
BoxI	GACNNNNGTC	1 cut(s)	319
BpiI	GAAGAC	1 cut(s)	145
BpmI	CTGGAG	1 cut(s)	429
BpuMI	CCSGG	5 cut(s)	234, 235, 280, 336, 675
BsaAI	YACGTR	2 cut(s)	611, 722
BsaHI	GRCGYC	2 cut(s)	170, 339
BsaJI	CCNNGG	2 cut(s)	233, 346
BsaWI	WCCGGW	4 cut(s)	122, 187, 329, 536
BsaXI	ACNNNNNCTCC	2 cut(s)	537, 567
Bsc4I	CCNNNNNNNGG	3 cut(s)	180, 233, 285
Bse1I	ACTGG	1 cut(s)	150
Bse3DI	GCAATG	2 cut(s)	202, 497
BseAI	TCCGGA	2 cut(s)	329, 536
BseBI	CCWGG	1 cut(s)	348
BseDI	CCNNGG	2 cut(s)	233, 346
BseGI	GGATG	1 cut(s)	533
BseLI	CCNNNNNNNGG	3 cut(s)	180, 233, 285
BseMI	GCAATG	2 cut(s)	202, 497
BseMII	CTCAG	2 cut(s)	55, 633
BseNI	ACTGG	1 cut(s)	150
BseSI	GKGCMC	1 cut(s)	227
BseXI	GCAGC	9 cut(s)	241, 281, 287, 634, 635, 641, 739, 742, 745
Bsh1285I	CGRYCG	1 cut(s)	192
BshFI	GGCC	1 cut(s)	225
BsiEI	CGRYCG	1 cut(s)	192
BsiHKCI	CYCGRG	1 cut(s)	233
BsiSI	CCGG	9 cut(s)	29, 123, 188, 234, 279, 330, 336, 537, 674
BslFI	GGGAC	2 cut(s)	327, 425
BslI	CCNNNNNNNGG	3 cut(s)	180, 233, 285
BsmAI	GTCTC	1 cut(s)	327
BsmFI	GGGAC	2 cut(s)	327, 425
BsnI	GGCC	1 cut(s)	225
BsoBI	CYCGRG	1 cut(s)	233
Bsp120I	GGGCCC	1 cut(s)	223
Bsp1286I	GDGCHC	2 cut(s)	187, 227
Bsp13I	TCCGGA	2 cut(s)	329, 536
Bsp143I	GATC	1 cut(s)	525
BspANI	GGCC	1 cut(s)	225
BspCNI	CTCAG	2 cut(s)	54, 632
BspEI	TCCGGA	2 cut(s)	329, 536
BspLI	GGNNCC	5 cut(s)	33, 186, 225, 238, 334
BspTI	CTTAAG	1 cut(s)	395
BsrDI	GCAATG	2 cut(s)	202, 497
BsrI	ACTGG	1 cut(s)	150
BssECI	CCNNGG	2 cut(s)	233, 346
BssMI	GATC	1 cut(s)	525
BssNI	GRCGYC	2 cut(s)	170, 339
Bst2UI	CCWGG	1 cut(s)	348
Bst4CI	ACNGT	4 cut(s)	96, 178, 380, 667
Bst6I	CTCTTC	2 cut(s)	259, 535
BstACI	GRCGYC	2 cut(s)	170, 339
BstAFI	CTTAAG	1 cut(s)	395
BstBAI	YACGTR	2 cut(s)	611, 722
BstC8I	GCNNGC	2 cut(s)	227, 652
BstDEI	CTNAG	3 cut(s)	41, 584, 619
BstEII	GGTNACC	1 cut(s)	118
BstF5I	GGATG	1 cut(s)	533
BstKTI	GATC	1 cut(s)	528
BstMAI	GTCTC	1 cut(s)	327
BstMBI	GATC	1 cut(s)	525
BstMCI	CGRYCG	1 cut(s)	192
BstMWI	GCNNNNNNNGC	3 cut(s)	208, 620, 758
BstNI	CCWGG	1 cut(s)	348
BstPAI	GACNNNNGTC	1 cut(s)	319
BstPI	GGTNACC	1 cut(s)	118
BstSCI	CCNGG	6 cut(s)	232, 233, 278, 334, 346, 673
BstSFI	CTRYAG	1 cut(s)	129
BstSLI	GKGCMC	1 cut(s)	227
BstV1I	GCAGC	9 cut(s)	241, 281, 287, 634, 635, 641, 739, 742, 745
BstV2I	GAAGAC	1 cut(s)	145
BsuRI	GGCC	1 cut(s)	225
BtsCI	GGATG	1 cut(s)	533
BtsIMutI	CAGTG	2 cut(s)	143, 663
Cac8I	GCNNGC	2 cut(s)	227, 652
Cfr13I	GGNCC	5 cut(s)	223, 224, 237, 327, 332
Cfr9I	CCCGGG	1 cut(s)	233
CpoI	CGGWCCG	1 cut(s)	327
CseI	GACGC	2 cut(s)	159, 328
CspI	CGGWCCG	1 cut(s)	327
DdeI	CTNAG	3 cut(s)	41, 584, 619
DpnI	GATC	1 cut(s)	527
DpnII	GATC	1 cut(s)	525
DriI	GACNNNNNGTC	1 cut(s)	338
Eam1104I	CTCTTC	2 cut(s)	259, 535
Eam1105I	GACNNNNNGTC	1 cut(s)	338
EarI	CTCTTC	2 cut(s)	259, 535
EciI	GGCGGA	1 cut(s)	332
Eco24I	GRGCYC	2 cut(s)	187, 227
Eco47I	GGWCC	3 cut(s)	237, 327, 332
Eco72I	CACGTG	2 cut(s)	611, 722
Eco88I	CYCGRG	1 cut(s)	233
Eco91I	GGTNACC	1 cut(s)	118
EcoO65I	GGTNACC	1 cut(s)	118
EcoRII	CCWGG	1 cut(s)	346
EcoT38I	GRGCYC	2 cut(s)	187, 227
FaiI	YATR	7 cut(s)	272, 308, 416, 438, 461, 602, 781
FaqI	GGGAC	2 cut(s)	327, 425
FauI	CCCGC	4 cut(s)	234, 290, 303, 415
FbaI	TGATCA	1 cut(s)	525
FblI	GTMKAC	1 cut(s)	382
FokI	GGATG	1 cut(s)	520
FriOI	GRGCYC	2 cut(s)	187, 227
FspBI	CTAG	1 cut(s)	641
GsuI	CTGGAG	1 cut(s)	429
HaeIII	GGCC	1 cut(s)	225
HapII	CCGG	9 cut(s)	29, 123, 188, 234, 279, 330, 336, 537, 674
HgaI	GACGC	2 cut(s)	159, 328
Hin1I	GRCGYC	2 cut(s)	170, 339
HincII	GTYRAC	2 cut(s)	383, 448
HindII	GTYRAC	2 cut(s)	383, 448
HinfI	GANTC	2 cut(s)	565, 767
HpaI	GTTAAC	1 cut(s)	448
HpaII	CCGG	9 cut(s)	29, 123, 188, 234, 279, 330, 336, 537, 674
HphI	GGTGA	3 cut(s)	130, 160, 584
Hpy166II	GTNNAC	3 cut(s)	174, 383, 448
Hpy188I	TCNGA	1 cut(s)	366
Hpy188III	TCNNGA	4 cut(s)	240, 330, 479, 537
Hpy8I	GTNNAC	3 cut(s)	174, 383, 448
Hpy99I	CGWCG	1 cut(s)	384
HpyAV	CCTTC	6 cut(s)	60, 241, 350, 476, 625, 625
HpyCH4III	ACNGT	4 cut(s)	96, 178, 380, 667
HpyCH4IV	ACGT	2 cut(s)	610, 721
HpyCH4V	TGCA	5 cut(s)	502, 657, 719, 761, 779
HpyF10VI	GCNNNNNNNGC	3 cut(s)	208, 620, 758
HpyF3I	CTNAG	3 cut(s)	41, 584, 619
HpySE526I	ACGT	2 cut(s)	610, 721
Hsp92I	GRCGYC	2 cut(s)	170, 339
Kpn2I	TCCGGA	2 cut(s)	329, 536
Ksp22I	TGATCA	1 cut(s)	525
KspAI	GTTAAC	1 cut(s)	448
Kzo9I	GATC	1 cut(s)	525
LmnI	GCTCC	4 cut(s)	37, 125, 190, 580
Lsp1109I	GCAGC	9 cut(s)	241, 281, 287, 634, 635, 641, 739, 742, 745
LweI	GCATC	1 cut(s)	357
MaeI	CTAG	1 cut(s)	641
MaeII	ACGT	2 cut(s)	610, 721
MaeIII	GTNAC	1 cut(s)	118
MalI	GATC	1 cut(s)	527
MboI	GATC	1 cut(s)	525
MboII	GAAGA	9 cut(s)	14, 45, 150, 276, 500, 523, 552, 574, 694
MhlI	GDGCHC	2 cut(s)	187, 227
MluCI	AATT	2 cut(s)	217, 402
MnlI	CCTC	8 cut(s)	36, 48, 67, 118, 260, 404, 637, 671
MroI	TCCGGA	2 cut(s)	329, 536
MseI	TTAA	2 cut(s)	396, 447
MspA1I	CMGCKG	2 cut(s)	294, 626
MspCI	CTTAAG	1 cut(s)	395
MspI	CCGG	9 cut(s)	29, 123, 188, 234, 279, 330, 336, 537, 674
MspR9I	CCNGG	6 cut(s)	234, 235, 280, 336, 348, 675
MvaI	CCWGG	1 cut(s)	348
MwoI	GCNNNNNNNGC	3 cut(s)	208, 620, 758
NciI	CCSGG	5 cut(s)	234, 235, 280, 336, 675
NdeII	GATC	1 cut(s)	525
NlaIV	GGNNCC	5 cut(s)	33, 186, 225, 238, 334
NmuCI	GTSAC	1 cut(s)	118
PfeI	GAWTC	2 cut(s)	565, 767
PmaCI	CACGTG	2 cut(s)	611, 722
PmlI	CACGTG	2 cut(s)	611, 722
Ppu21I	YACGTR	2 cut(s)	611, 722
PshAI	GACNNNNGTC	1 cut(s)	319
Psp6I	CCWGG	1 cut(s)	346
PspCI	CACGTG	2 cut(s)	611, 722
PspEI	GGTNACC	1 cut(s)	118
PspGI	CCWGG	1 cut(s)	346
PspN4I	GGNNCC	5 cut(s)	33, 186, 225, 238, 334
PspOMI	GGGCCC	1 cut(s)	223
PspPI	GGNCC	5 cut(s)	223, 224, 237, 327, 332
PvuII	CAGCTG	1 cut(s)	294
Rsr2I	CGGWCCG	1 cut(s)	327
RsrII	CGGWCCG	1 cut(s)	327
SalI	GTCGAC	1 cut(s)	381
SaqAI	TTAA	2 cut(s)	396, 447
Sau3AI	GATC	1 cut(s)	525
Sau96I	GGNCC	5 cut(s)	223, 224, 237, 327, 332
ScrFI	CCNGG	6 cut(s)	234, 235, 280, 336, 348, 675
SduI	GDGCHC	2 cut(s)	187, 227
SfaNI	GCATC	1 cut(s)	357
SfcI	CTRYAG	1 cut(s)	129
SinI	GGWCC	3 cut(s)	237, 327, 332
SmaI	CCCGGG	1 cut(s)	235
SmlI	CTYRAG	1 cut(s)	395
SmoI	CTYRAG	1 cut(s)	395
Sse9I	AATT	2 cut(s)	217, 402
SspMI	CTAG	1 cut(s)	641
StyD4I	CCNGG	6 cut(s)	232, 233, 278, 334, 346, 673
TaaI	ACNGT	4 cut(s)	96, 178, 380, 667
TaiI	ACGT	2 cut(s)	613, 724
TaqI	TCGA	1 cut(s)	382
TaqII	GACCGA	1 cut(s)	315
TasI	AATT	2 cut(s)	217, 402
TauI	GCSGC	5 cut(s)	167, 170, 373, 470, 629
TfiI	GAWTC	2 cut(s)	565, 767
Tru1I	TTAA	2 cut(s)	396, 447
Tru9I	TTAA	2 cut(s)	396, 447
TscAI	CASTG	2 cut(s)	150, 670
TseFI	GTSAC	1 cut(s)	118
TseI	GCWGC	9 cut(s)	229, 275, 294, 623, 647, 654, 752, 755, 758
Tsp45I	GTSAC	1 cut(s)	118
TspDTI	ATGAA	1 cut(s)	744
TspGWI	ACGGA	2 cut(s)	100, 562
TspMI	CCCGGG	1 cut(s)	233
TspRI	CASTG	2 cut(s)	150, 670
Vha464I	CTTAAG	1 cut(s)	395
VpaK11BI	GGWCC	3 cut(s)	237, 327, 332
XmaI	CCCGGG	1 cut(s)	233
XmiI	GTMKAC	1 cut(s)	382
XspI	CTAG	1 cut(s)	641

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.