Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000004

Orthogroup ID

OG0014321

Physical Location & Seq

Genomic Coordinates Reverse (-)

45648731 .. 45649219

Gene Structure 489 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug04G0282400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 384 bp

ATGGGCAATCATCCTCGTCCAGTGGCGCTTGGGCGCACCGGCTGGCCTTTGGCCTCGCCGTTGTCACGAGGTTGGCTGCCGGACAGATCTGGCGATCGATTCTCCGAGGCGACGTGGCTTGAAGCGACATGGCTCGTGCGGGTTTGGGTTGTCGACGGTATGCTTGTGGCGGTTCGGATCGTGCGGTGCAAGTCGTGGTGGCGTGTTCTGTGGGGTTTTGGGTCGCTGGAGGTGGATGGTTGGGCGCAAATCGAAACGGTGCTGGTAGTGGCGGCGTACGGCGGACGGAGCTTGGCTGGCTGGTCTGTGCGTCGGGGATGGAGTTTGGCTGGCAGGTGGACTAGACCGGACCAGGCTATTGGGCCTTGGGTGGACCTTTGCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000311 GO:0000313 GO:0000315 GO:0003674 GO:0003735 GO:0005198 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005840 GO:0006412 GO:0006518 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009507 GO:0009526 GO:0009532 GO:0009536 GO:0009547 GO:0009570 GO:0009719 GO:0009725 GO:0009735 GO:0009941 GO:0009987 GO:0010033 GO:0010467 GO:0015934 GO:0019538 GO:0031967 GO:0031975 GO:0032991 GO:0034641 GO:0034645 GO:0042221 GO:0043043 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044391 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0050896 GO:0071704 GO:1901564 GO:1901566 GO:1901576 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosomal_L27A

Protein Analysis

127

Amino Acids

14.3

Weight (kDa)

10.56

Isoelectric Point (pI)

34.62

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0014321)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G25920
fragaria_vesca	FvH4_4g27310
malus_domestica	MD13G1041400.v1.1 MD16G1042300.v1.1
prunus_persica	Prupe.1G311800_v2.0.a1 Prupe.1G311800_v2.0.a1
pyrus_communis	pycom13g03590
rosa_chinensis	RchiOBHm_Chr4g0435111
rosa_laevigata	RLG00000006619
rosa_multiflora	Rmu_sc0000400.1_g000009
rosa_roxburghii	Rroxscaffold_5G00376320
rosa_rugosa	Rorug04G0282400
rosa_samantha	Rh4AG337900 Rh4BG346000 Rh4CG360500 Rh4DG340400
rosa_wichuraiana	Rw4G029460

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	324
Acc36I	ACCTGC	1 cut(s)	324
AccI	GTMKAC	1 cut(s)	153
AciI	CCGC	5 cut(s)	139, 170, 184, 272, 282
AclWI	GGATC	1 cut(s)	185
AfaI	GTAC	1 cut(s)	278
AgsI	TTSAA	1 cut(s)	122
AjiI	CACGTC	1 cut(s)	114
AjnI	CCWGG	1 cut(s)	351
AluBI	AGCT	1 cut(s)	291
AluI	AGCT	1 cut(s)	291
AlwI	GGATC	1 cut(s)	185
AoxI	GGCC	3 cut(s)	44, 51, 362
ApeKI	GCWGC	1 cut(s)	76
AspLEI	GCGC	3 cut(s)	28, 36, 247
AspS9I	GGNCC	3 cut(s)	349, 362, 373
AvaII	GGWCC	2 cut(s)	349, 373
BauI	CACGAG	2 cut(s)	66, 134
BbvI	GCAGC	1 cut(s)	63
BccI	CCATC	2 cut(s)	230, 312
BceAI	ACGGC	2 cut(s)	43, 295
BciT130I	CCWGG	1 cut(s)	353
BfaI	CTAG	1 cut(s)	342
BfoI	RGCGCY	1 cut(s)	29
BfuAI	ACCTGC	1 cut(s)	324
BglII	AGATCT	1 cut(s)	86
BisI	GCNGC	2 cut(s)	77, 273
BlsI	GCNGC	2 cut(s)	78, 274
Bme1390I	CCNGG	1 cut(s)	353
Bme18I	GGWCC	2 cut(s)	349, 373
BmgBI	CACGTC	1 cut(s)	114
BmgT120I	GGNCC	3 cut(s)	349, 362, 373
BmrFI	CCNGG	1 cut(s)	353
BpmI	CTGGAG	1 cut(s)	248
Bsa29I	ATCGAT	1 cut(s)	97
BsaJI	CCNNGG	2 cut(s)	105, 365
BsaWI	WCCGGW	1 cut(s)	346
Bse118I	RCCGGY	1 cut(s)	38
Bse1I	ACTGG	1 cut(s)	20
BseBI	CCWGG	1 cut(s)	353
BseCI	ATCGAT	1 cut(s)	97
BseDI	CCNNGG	2 cut(s)	105, 365
BseGI	GGATG	3 cut(s)	10, 241, 323
BseNI	ACTGG	1 cut(s)	20
BseXI	GCAGC	1 cut(s)	63
Bsh1285I	CGRYCG	1 cut(s)	97
BshFI	GGCC	3 cut(s)	46, 53, 364
BshVI	ATCGAT	1 cut(s)	97
BsiEI	CGRYCG	1 cut(s)	97
BsiSI	CCGG	3 cut(s)	39, 80, 347
BsiWI	CGTACG	1 cut(s)	276
BsnI	GGCC	3 cut(s)	46, 53, 364
Bsp143I	GATC	3 cut(s)	86, 94, 177
BspACI	CCGC	5 cut(s)	139, 170, 184, 272, 282
BspANI	GGCC	3 cut(s)	46, 53, 364
BspDI	ATCGAT	1 cut(s)	97
BspMI	ACCTGC	1 cut(s)	324
BspPI	GGATC	1 cut(s)	185
BsrFI	RCCGGY	1 cut(s)	38
BsrI	ACTGG	1 cut(s)	20
BssAI	RCCGGY	1 cut(s)	38
BssECI	CCNNGG	2 cut(s)	105, 365
BssMI	GATC	3 cut(s)	86, 94, 177
BssSI	CACGAG	2 cut(s)	66, 134
BssT1I	CCWWGG	1 cut(s)	365
Bst2BI	CACGAG	2 cut(s)	66, 134
Bst2UI	CCWGG	1 cut(s)	353
Bst4CI	ACNGT	2 cut(s)	158, 259
BstC8I	GCNNGC	3 cut(s)	44, 298, 331
BstF5I	GGATG	3 cut(s)	10, 241, 323
BstH2I	RGCGCY	1 cut(s)	29
BstHHI	GCGC	3 cut(s)	28, 36, 247
BstKTI	GATC	3 cut(s)	89, 97, 180
BstMBI	GATC	3 cut(s)	86, 94, 177
BstMCI	CGRYCG	1 cut(s)	97
BstMWI	GCNNNNNNNGC	2 cut(s)	288, 297
BstNI	CCWGG	1 cut(s)	353
BstSCI	CCNGG	1 cut(s)	351
BstV1I	GCAGC	1 cut(s)	63
BstX2I	RGATCY	1 cut(s)	86
BstXI	CCANNNNNNTGG	1 cut(s)	359
BstYI	RGATCY	1 cut(s)	86
Bsu15I	ATCGAT	1 cut(s)	97
BsuRI	GGCC	3 cut(s)	46, 53, 364
BsuTUI	ATCGAT	1 cut(s)	97
BtrI	CACGTC	1 cut(s)	114
BtsCI	GGATG	3 cut(s)	10, 241, 323
BtsIMutI	CAGTG	1 cut(s)	27
BveI	ACCTGC	1 cut(s)	324
Cac8I	GCNNGC	3 cut(s)	44, 298, 331
CfoI	GCGC	3 cut(s)	28, 36, 247
Cfr10I	RCCGGY	1 cut(s)	38
Cfr13I	GGNCC	3 cut(s)	349, 362, 373
ClaI	ATCGAT	1 cut(s)	97
CseI	GACGC	1 cut(s)	299
Csp6I	GTAC	1 cut(s)	277
CviAII	CATG	1 cut(s)	129
CviQI	GTAC	1 cut(s)	277
DpnI	GATC	3 cut(s)	88, 96, 179
DpnII	GATC	3 cut(s)	86, 94, 177
EciI	GGCGGA	1 cut(s)	297
Eco130I	CCWWGG	1 cut(s)	365
Eco47I	GGWCC	2 cut(s)	349, 373
EcoRII	CCWGG	1 cut(s)	351
EcoT14I	CCWWGG	1 cut(s)	365
ErhI	CCWWGG	1 cut(s)	365
FaeI	CATG	1 cut(s)	132
FaiI	YATR	2 cut(s)	130, 161
FatI	CATG	1 cut(s)	128
FauI	CCCGC	1 cut(s)	132
FblI	GTMKAC	1 cut(s)	153
Fnu4HI	GCNGC	2 cut(s)	77, 273
FokI	GGATG	2 cut(s)	248, 330
Fsp4HI	GCNGC	2 cut(s)	77, 273
FspBI	CTAG	1 cut(s)	342
GlaI	GCGC	3 cut(s)	27, 35, 246
GluI	GCNGC	2 cut(s)	77, 273
GsuI	CTGGAG	1 cut(s)	248
HaeII	RGCGCY	1 cut(s)	29
HaeIII	GGCC	3 cut(s)	46, 53, 364
HapII	CCGG	3 cut(s)	39, 80, 347
HgaI	GACGC	1 cut(s)	299
HhaI	GCGC	3 cut(s)	28, 36, 247
Hin1II	CATG	1 cut(s)	132
Hin6I	GCGC	3 cut(s)	26, 34, 245
HinP1I	GCGC	3 cut(s)	26, 34, 245
HincII	GTYRAC	1 cut(s)	154
HindII	GTYRAC	1 cut(s)	154
HinfI	GANTC	1 cut(s)	99
HpaII	CCGG	3 cut(s)	39, 80, 347
Hpy166II	GTNNAC	3 cut(s)	154, 339, 373
Hpy188I	TCNGA	2 cut(s)	106, 177
Hpy188III	TCNNGA	1 cut(s)	66
Hpy8I	GTNNAC	3 cut(s)	154, 339, 373
Hpy99I	CGWCG	3 cut(s)	115, 158, 315
HpyCH4III	ACNGT	2 cut(s)	158, 259
HpyCH4IV	ACGT	1 cut(s)	113
HpyCH4V	TGCA	1 cut(s)	189
HpyF10VI	GCNNNNNNNGC	2 cut(s)	288, 297
HpySE526I	ACGT	1 cut(s)	113
Hsp92II	CATG	1 cut(s)	132
HspAI	GCGC	3 cut(s)	26, 34, 245
Kzo9I	GATC	3 cut(s)	86, 94, 177
LmnI	GCTCC	1 cut(s)	288
Lsp1109I	GCAGC	1 cut(s)	63
MaeI	CTAG	1 cut(s)	342
MaeII	ACGT	1 cut(s)	113
MaeIII	GTNAC	1 cut(s)	63
MalI	GATC	3 cut(s)	88, 96, 179
MboI	GATC	3 cut(s)	86, 94, 177
MflI	RGATCY	1 cut(s)	86
MnlI	CCTC	5 cut(s)	24, 62, 64, 100, 223
MspI	CCGG	3 cut(s)	39, 80, 347
MspR9I	CCNGG	1 cut(s)	353
MvaI	CCWGG	1 cut(s)	353
MwoI	GCNNNNNNNGC	2 cut(s)	288, 297
NdeII	GATC	3 cut(s)	86, 94, 177
NlaIII	CATG	1 cut(s)	132
NmuCI	GTSAC	1 cut(s)	63
PaqCI	CACCTGC	1 cut(s)	324
PfeI	GAWTC	1 cut(s)	99
Pfl23II	CGTACG	1 cut(s)	276
PkrI	GCNGC	2 cut(s)	78, 274
Ple19I	CGATCG	1 cut(s)	97
Psp6I	CCWGG	1 cut(s)	351
PspGI	CCWGG	1 cut(s)	351
PspLI	CGTACG	1 cut(s)	276
PspPI	GGNCC	3 cut(s)	349, 362, 373
PsuI	RGATCY	1 cut(s)	86
PvuI	CGATCG	1 cut(s)	97
RsaI	GTAC	1 cut(s)	278
RsaNI	GTAC	1 cut(s)	277
SalI	GTCGAC	1 cut(s)	152
SatI	GCNGC	2 cut(s)	77, 273
Sau3AI	GATC	3 cut(s)	86, 94, 177
Sau96I	GGNCC	3 cut(s)	349, 362, 373
ScrFI	CCNGG	1 cut(s)	353
SetI	ASST	6 cut(s)	73, 116, 234, 293, 338, 378
SinI	GGWCC	2 cut(s)	349, 373
SsiI	CCGC	5 cut(s)	139, 170, 184, 272, 282
SspMI	CTAG	1 cut(s)	342
StyD4I	CCNGG	1 cut(s)	351
StyI	CCWWGG	1 cut(s)	365
TaaI	ACNGT	2 cut(s)	158, 259
TaiI	ACGT	1 cut(s)	116
TaqI	TCGA	3 cut(s)	97, 153, 252
TauI	GCSGC	1 cut(s)	275
TfiI	GAWTC	1 cut(s)	99
TscAI	CASTG	1 cut(s)	27
TseFI	GTSAC	1 cut(s)	63
TseI	GCWGC	1 cut(s)	76
Tsp45I	GTSAC	1 cut(s)	63
TspGWI	ACGGA	1 cut(s)	301
TspRI	CASTG	1 cut(s)	27
VpaK11BI	GGWCC	2 cut(s)	349, 373
XmiI	GTMKAC	1 cut(s)	153
XspI	CTAG	1 cut(s)	342

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.