Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4C

Orthogroup ID

OG0014321

Physical Location & Seq

Genomic Coordinates Forward (+)

61765158 .. 61768149

Gene Structure 2992 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4CG360500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 801 bp

ATGGCAGCGTCCCCGCTCTTTCTTTCTTCAAGCCCAGCCCTGCGTTTCCCTTCTTCGCCATTCAAGGGAAATGTGAGCAACTTGAGGCCAAGCTTATGTTCAATCCCCTCGCTCAAGACGACTCCGACTCCAGCTCCGACTCCTCAGAGAAGACAGCTGGTGGTTGTGAACAAGGCGGCCGCGGCGGTAGTCGGGGCTCCGACTGGGAACGTCCGGTTCAGGCTGGACAACTTGGGCCCGCAACCCGGGTCCAGAAAGAAGGGTAAGAGAAAGGGAAGAGGTATTGCTGCTGGGCAAGGCAACAGCTGCGGGTTCGGTATGCGGGGACAGAAGTCCCGGTCCGGACCGGGTGTCCGGCCCGGATTTGAAGGTGGACAGATGCCGCTCTATCGTCGAATTCCCAAGCTCAAGGGAATTGCTGGAGGTATGCATAAGGGGTTGCCTAAATATGTGCCTGTGAACTTGAAAGATATAGAAGACGCAGGGTTTGAAGAAGGAGAAGAAGTTTCGTTAGAGAGTTTGAAGGACAAGGGGTTGATCAACCCTTCGGGGAGAGAGAGGAAACTCCCTTTGAAGATTCTTGGTGATGGGGAACTCAAAGTGAAGCTGAGCTTTAAGGCTCGGGCTTTTTCTACAGCGGCGAAGGAGAAGCTTGAGGCTGCTGGCTGTAGTCTCACTGTTTTACCGGGCCGGAAGAAGTGGGTAAAGCCATCAGTTGCTAAGAACATTGCCCGTGCTGATGAATACTTTGCCAAGAAAAGAGCAGCCGCAGCTGCTGCTGCTGAAGCACCATCTGCTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000311 GO:0000313 GO:0000315 GO:0003674 GO:0003735 GO:0005198 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005840 GO:0006412 GO:0006518 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009507 GO:0009526 GO:0009532 GO:0009536 GO:0009547 GO:0009570 GO:0009719 GO:0009725 GO:0009735 GO:0009941 GO:0009987 GO:0010033 GO:0010467 GO:0015934 GO:0019538 GO:0031967 GO:0031975 GO:0032991 GO:0034641 GO:0034645 GO:0042221 GO:0043043 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044391 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0050896 GO:0071704 GO:1901564 GO:1901566 GO:1901576 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosomal_L27A

Protein Analysis

266

Amino Acids

28.06

Weight (kDa)

10.57

Isoelectric Point (pI)

48.25

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ribosomal_L27A	PF00828	152 - 225	4.1e-15	Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0014321)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G25920
fragaria_vesca	FvH4_4g27310
malus_domestica	MD13G1041400.v1.1 MD16G1042300.v1.1
prunus_persica	Prupe.1G311800_v2.0.a1 Prupe.1G311800_v2.0.a1
pyrus_communis	pycom13g03590
rosa_chinensis	RchiOBHm_Chr4g0435111
rosa_laevigata	RLG00000006619
rosa_multiflora	Rmu_sc0000400.1_g000009
rosa_roxburghii	Rroxscaffold_5G00376320
rosa_rugosa	Rorug04G0282400
rosa_samantha	Rh4AG337900 Rh4BG346000 Rh4CG360500 Rh4DG340400
rosa_wichuraiana	Rw4G029460

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	2 cut(s)	16, 385
AccII	CGCG	1 cut(s)	182
AccIII	TCCGGA	1 cut(s)	341
AcoI	YGGCCR	1 cut(s)	177
AcsI	RAATTY	1 cut(s)	396
AfiI	CCNNNNNNNGG	2 cut(s)	65, 245
AgsI	TTSAA	8 cut(s)	30, 64, 102, 368, 466, 491, 523, 574
AhdI	GACNNNNNGTC	1 cut(s)	350
AjuI	GAANNNNNNNTTGG	2 cut(s)	82, 114
AluBI	AGCT	9 cut(s)	93, 134, 157, 306, 406, 607, 612, 652, 773
AluI	AGCT	9 cut(s)	93, 134, 157, 306, 406, 607, 612, 652, 773
Alw26I	GTCTC	1 cut(s)	677
AlwNI	CAGNNNCTG	1 cut(s)	776
Ama87I	CYCGRG	2 cut(s)	245, 621
Aor13HI	TCCGGA	1 cut(s)	341
AoxI	GGCC	5 cut(s)	86, 177, 235, 356, 688
ApaI	GGGCCC	1 cut(s)	239
ApeKI	GCWGC	9 cut(s)	5, 287, 306, 659, 764, 770, 773, 776, 779
ApoI	RAATTY	1 cut(s)	396
ArsI	GACNNNNNNTTYG	2 cut(s)	470, 502
AspS9I	GGNCC	7 cut(s)	235, 236, 249, 339, 344, 357, 688
AsuC2I	CCSGG	6 cut(s)	246, 247, 337, 348, 360, 687
AsuHPI	GGTGA	1 cut(s)	596
AvaI	CYCGRG	2 cut(s)	245, 621
AvaII	GGWCC	3 cut(s)	249, 339, 344
BaeGI	GKGCMC	1 cut(s)	239
BanII	GRGCYC	2 cut(s)	199, 239
BbsI	GAAGAC	2 cut(s)	157, 483
BbvI	GCAGC	9 cut(s)	17, 274, 293, 646, 760, 763, 766, 776, 782
BccI	CCATC	3 cut(s)	581, 718, 799
BclI	TGATCA	1 cut(s)	537
BcnI	CCSGG	6 cut(s)	246, 247, 337, 348, 360, 687
BcoDI	GTCTC	1 cut(s)	677
BfmI	CTRYAG	2 cut(s)	633, 667
BlpI	GCTNAGC	1 cut(s)	608
Bme1390I	CCNGG	6 cut(s)	246, 247, 337, 348, 360, 687
Bme18I	GGWCC	3 cut(s)	249, 339, 344
BmeRI	GACNNNNNGTC	1 cut(s)	350
BmeT110I	CYCGRG	2 cut(s)	245, 621
BmgT120I	GGNCC	7 cut(s)	235, 236, 249, 339, 344, 357, 688
BmiI	GGNNCC	3 cut(s)	198, 237, 250
BmrFI	CCNGG	6 cut(s)	246, 247, 337, 348, 360, 687
BmrI	ACTGGG	1 cut(s)	213
BmsI	GCATC	1 cut(s)	369
BmuI	ACTGGG	1 cut(s)	213
BoxI	GACNNNNGTC	1 cut(s)	331
BpiI	GAAGAC	2 cut(s)	157, 483
BpmI	CTGGAG	2 cut(s)	114, 441
Bpu1102I	GCTNAGC	1 cut(s)	608
BpuEI	CTTGAG	4 cut(s)	98, 103, 392, 674
BpuMI	CCSGG	6 cut(s)	246, 247, 337, 348, 360, 687
BsaJI	CCNNGG	2 cut(s)	180, 245
BsaWI	WCCGGW	2 cut(s)	213, 341
BsaXI	ACNNNNNCTCC	6 cut(s)	112, 118, 142, 148, 489, 519
Bsc4I	CCNNNNNNNGG	2 cut(s)	65, 245
Bse1I	ACTGG	1 cut(s)	208
Bse3DI	GCAATG	1 cut(s)	726
BseAI	TCCGGA	1 cut(s)	341
BseDI	CCNNGG	2 cut(s)	180, 245
BseLI	CCNNNNNNNGG	2 cut(s)	65, 245
BseMI	GCAATG	1 cut(s)	726
BseMII	CTCAG	2 cut(s)	158, 599
BseNI	ACTGG	1 cut(s)	208
BseRI	GAGGAG	1 cut(s)	132
BseSI	GKGCMC	1 cut(s)	239
BseX3I	CGGCCG	1 cut(s)	177
BseXI	GCAGC	9 cut(s)	17, 274, 293, 646, 760, 763, 766, 776, 782
BseYI	CCCAGC	2 cut(s)	34, 290
Bsh1236I	CGCG	1 cut(s)	182
Bsh1285I	CGRYCG	1 cut(s)	180
BshFI	GGCC	5 cut(s)	88, 179, 237, 358, 690
BsiEI	CGRYCG	1 cut(s)	180
BsiHKCI	CYCGRG	2 cut(s)	245, 621
BsiSI	CCGG	9 cut(s)	214, 246, 337, 342, 347, 355, 360, 686, 691
BslFI	GGGAC	2 cut(s)	319, 339
BslI	CCNNNNNNNGG	2 cut(s)	65, 245
BsmAI	GTCTC	1 cut(s)	677
BsmFI	GGGAC	2 cut(s)	319, 339
BsnI	GGCC	5 cut(s)	88, 179, 237, 358, 690
BsoBI	CYCGRG	2 cut(s)	245, 621
Bsp120I	GGGCCC	1 cut(s)	235
Bsp1286I	GDGCHC	2 cut(s)	199, 239
Bsp13I	TCCGGA	1 cut(s)	341
Bsp143I	GATC	1 cut(s)	537
Bsp1720I	GCTNAGC	1 cut(s)	608
BspANI	GGCC	5 cut(s)	88, 179, 237, 358, 690
BspCNI	CTCAG	2 cut(s)	157, 600
BspEI	TCCGGA	1 cut(s)	341
BspFNI	CGCG	1 cut(s)	182
BspLI	GGNNCC	3 cut(s)	198, 237, 250
BsrBI	CCGCTC	2 cut(s)	16, 385
BsrDI	GCAATG	1 cut(s)	726
BsrI	ACTGG	1 cut(s)	208
BssECI	CCNNGG	2 cut(s)	180, 245
BssMI	GATC	1 cut(s)	537
Bst4CI	ACNGT	1 cut(s)	679
Bst6I	CTCTTC	1 cut(s)	271
BstAPI	GCANNNNNTGC	3 cut(s)	306, 776, 794
BstC8I	GCNNGC	2 cut(s)	239, 664
BstDEI	CTNAG	4 cut(s)	144, 608, 720, 798
BstDSI	CCRYGG	1 cut(s)	180
BstFNI	CGCG	1 cut(s)	182
BstKTI	GATC	1 cut(s)	540
BstMAI	GTCTC	1 cut(s)	677
BstMBI	GATC	1 cut(s)	537
BstMCI	CGRYCG	1 cut(s)	180
BstMWI	GCNNNNNNNGC	8 cut(s)	182, 306, 770, 773, 776, 779, 785, 794
BstPAI	GACNNNNGTC	1 cut(s)	331
BstSCI	CCNGG	6 cut(s)	244, 245, 335, 346, 358, 685
BstSFI	CTRYAG	2 cut(s)	633, 667
BstSLI	GKGCMC	1 cut(s)	239
BstUI	CGCG	1 cut(s)	182
BstV1I	GCAGC	9 cut(s)	17, 274, 293, 646, 760, 763, 766, 776, 782
BstV2I	GAAGAC	2 cut(s)	157, 483
BstZI	CGGCCG	1 cut(s)	177
BsuRI	GGCC	5 cut(s)	88, 179, 237, 358, 690
BtgI	CCRYGG	1 cut(s)	180
BtsIMutI	CAGTG	1 cut(s)	675
Cac8I	GCNNGC	2 cut(s)	239, 664
CaiI	CAGNNNCTG	1 cut(s)	776
CciNI	GCGGCCGC	1 cut(s)	177
Cfr13I	GGNCC	7 cut(s)	235, 236, 249, 339, 344, 357, 688
Cfr42I	CCGCGG	1 cut(s)	183
Cfr9I	CCCGGG	1 cut(s)	245
CpoI	CGGWCCG	2 cut(s)	339, 344
CseI	GACGC	1 cut(s)	488
CspI	CGGWCCG	2 cut(s)	339, 344
DdeI	CTNAG	4 cut(s)	144, 608, 720, 798
DpnI	GATC	1 cut(s)	539
DpnII	GATC	1 cut(s)	537
DriI	GACNNNNNGTC	1 cut(s)	350
EaeI	YGGCCR	1 cut(s)	177
EagI	CGGCCG	1 cut(s)	177
Eam1104I	CTCTTC	1 cut(s)	271
Eam1105I	GACNNNNNGTC	1 cut(s)	350
EarI	CTCTTC	1 cut(s)	271
EclXI	CGGCCG	1 cut(s)	177
Eco24I	GRGCYC	2 cut(s)	199, 239
Eco47I	GGWCC	3 cut(s)	249, 339, 344
Eco52I	CGGCCG	1 cut(s)	177
Eco88I	CYCGRG	2 cut(s)	245, 621
EcoRI	GAATTC	1 cut(s)	396
EcoT22I	ATGCAT	1 cut(s)	432
EcoT38I	GRGCYC	2 cut(s)	199, 239
FaiI	YATR	6 cut(s)	97, 320, 428, 432, 450, 473
FalI	AAGNNNNNCTT	2 cut(s)	596, 628
FaqI	GGGAC	2 cut(s)	319, 339
FauI	CCCGC	4 cut(s)	21, 246, 302, 315
FbaI	TGATCA	1 cut(s)	537
FriOI	GRGCYC	2 cut(s)	199, 239
GsaI	CCCAGC	2 cut(s)	38, 294
GsuI	CTGGAG	2 cut(s)	114, 441
HaeIII	GGCC	5 cut(s)	88, 179, 237, 358, 690
HapII	CCGG	9 cut(s)	214, 246, 337, 342, 347, 355, 360, 686, 691
HgaI	GACGC	1 cut(s)	488
HindIII	AAGCTT	2 cut(s)	91, 650
HinfI	GANTC	4 cut(s)	121, 127, 139, 577
HpaII	CCGG	9 cut(s)	214, 246, 337, 342, 347, 355, 360, 686, 691
HphI	GGTGA	1 cut(s)	596
Hpy166II	GTNNAC	3 cut(s)	169, 374, 460
Hpy188I	TCNGA	4 cut(s)	126, 138, 147, 201
Hpy188III	TCNNGA	3 cut(s)	115, 252, 342
Hpy8I	GTNNAC	3 cut(s)	169, 374, 460
Hpy99I	CGWCG	1 cut(s)	396
HpyAV	CCTTC	7 cut(s)	60, 253, 362, 488, 517, 555, 637
HpyCH4III	ACNGT	1 cut(s)	679
HpyCH4IV	ACGT	1 cut(s)	210
HpyCH4V	TGCA	1 cut(s)	430
HpyF10VI	GCNNNNNNNGC	8 cut(s)	182, 306, 770, 773, 776, 779, 785, 794
HpyF3I	CTNAG	4 cut(s)	144, 608, 720, 798
HpySE526I	ACGT	1 cut(s)	210
Kpn2I	TCCGGA	1 cut(s)	341
Ksp22I	TGATCA	1 cut(s)	537
KspI	CCGCGG	1 cut(s)	183
Kzo9I	GATC	1 cut(s)	537
LmnI	GCTCC	2 cut(s)	139, 202
Lsp1109I	GCAGC	9 cut(s)	17, 274, 293, 646, 760, 763, 766, 776, 782
LweI	GCATC	1 cut(s)	369
MaeII	ACGT	1 cut(s)	210
MalI	GATC	1 cut(s)	539
MbiI	CCGCTC	2 cut(s)	16, 385
MboI	GATC	1 cut(s)	537
MboII	GAAGA	9 cut(s)	18, 45, 162, 288, 488, 503, 512, 586, 706
MhlI	GDGCHC	2 cut(s)	199, 239
MluCI	AATT	2 cut(s)	396, 414
MlyI	GAGTC	3 cut(s)	115, 121, 133
MmeI	TCCRAC	3 cut(s)	149, 161, 224
MnlI	CCTC	7 cut(s)	78, 118, 153, 272, 416, 552, 649
Mph1103I	ATGCAT	1 cut(s)	432
MroI	TCCGGA	1 cut(s)	341
MseI	TTAA	1 cut(s)	615
MspA1I	CMGCKG	5 cut(s)	157, 182, 306, 638, 773
MspI	CCGG	9 cut(s)	214, 246, 337, 342, 347, 355, 360, 686, 691
MspR9I	CCNGG	6 cut(s)	246, 247, 337, 348, 360, 687
MvnI	CGCG	1 cut(s)	182
MwoI	GCNNNNNNNGC	8 cut(s)	182, 306, 770, 773, 776, 779, 785, 794
NciI	CCSGG	6 cut(s)	246, 247, 337, 348, 360, 687
NdeII	GATC	1 cut(s)	537
NlaIV	GGNNCC	3 cut(s)	198, 237, 250
NotI	GCGGCCGC	1 cut(s)	177
NsiI	ATGCAT	1 cut(s)	432
PcsI	WCGNNNNNNNCGW	1 cut(s)	116
PfeI	GAWTC	1 cut(s)	577
PleI	GAGTC	3 cut(s)	115, 121, 133
PpsI	GAGTC	3 cut(s)	115, 121, 133
PshAI	GACNNNNGTC	1 cut(s)	331
PspFI	CCCAGC	2 cut(s)	34, 290
PspN4I	GGNNCC	3 cut(s)	198, 237, 250
PspOMI	GGGCCC	1 cut(s)	235
PspPI	GGNCC	7 cut(s)	235, 236, 249, 339, 344, 357, 688
PstNI	CAGNNNCTG	1 cut(s)	776
PvuII	CAGCTG	3 cut(s)	157, 306, 773
Rsr2I	CGGWCCG	2 cut(s)	339, 344
RsrII	CGGWCCG	2 cut(s)	339, 344
SacII	CCGCGG	1 cut(s)	183
SaqAI	TTAA	1 cut(s)	615
Sau3AI	GATC	1 cut(s)	537
Sau96I	GGNCC	7 cut(s)	235, 236, 249, 339, 344, 357, 688
SchI	GAGTC	3 cut(s)	115, 121, 133
ScrFI	CCNGG	6 cut(s)	246, 247, 337, 348, 360, 687
SduI	GDGCHC	2 cut(s)	199, 239
SfaNI	GCATC	1 cut(s)	369
SfcI	CTRYAG	2 cut(s)	633, 667
Sfr303I	CCGCGG	1 cut(s)	183
SgrBI	CCGCGG	1 cut(s)	183
SinI	GGWCC	3 cut(s)	249, 339, 344
SmaI	CCCGGG	1 cut(s)	247
SmlI	CTYRAG	4 cut(s)	82, 113, 407, 653
SmoI	CTYRAG	4 cut(s)	82, 113, 407, 653
Sse9I	AATT	2 cut(s)	396, 414
StyD4I	CCNGG	6 cut(s)	244, 245, 335, 346, 358, 685
TaaI	ACNGT	1 cut(s)	679
TaiI	ACGT	1 cut(s)	213
TaqI	TCGA	1 cut(s)	394
TasI	AATT	2 cut(s)	396, 414
TauI	GCSGC	6 cut(s)	179, 182, 185, 385, 641, 770
TfiI	GAWTC	1 cut(s)	577
Tru1I	TTAA	1 cut(s)	615
Tru9I	TTAA	1 cut(s)	615
TscAI	CASTG	1 cut(s)	682
TseI	GCWGC	9 cut(s)	5, 287, 306, 659, 764, 770, 773, 776, 779
TspDTI	ATGAA	1 cut(s)	756
TspMI	CCCGGG	1 cut(s)	245
TspRI	CASTG	1 cut(s)	682
VpaK11BI	GGWCC	3 cut(s)	249, 339, 344
XapI	RAATTY	1 cut(s)	396
XmaI	CCCGGG	1 cut(s)	245
Zsp2I	ATGCAT	1 cut(s)	432

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.