Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr4

Orthogroup ID

OG0014321

Physical Location & Seq

Genomic Coordinates Forward (+)

56136340 .. 56138615

Gene Structure 2276 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw4G029460.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 798 bp

ATGGCAGCGTCCCCGCTCTTTCTTTCGTCAAGCCCCGCCCTGCGTTTCCCTTCTTCGCCATTCAAGGGAAATGTGAGCAACTTGAGGCCAAGCTTATGTTCAATCCCCTCGCTCAAGACGACGACTCCTCCTCCTCCTCCTCAGAGAAGACAGCTGGTGGTTGTGAACAAGGCGGCCGCGGCGGTAGTCGGGGCTCCGACTGGGAACGTCCGGTTCAGGCTGGACAATTTGGGCCCGCAACCCGGGTCCAGAAAGAAGGGTAAGAGAAAGGGAAGAGGTATTGCTGCTGGGCAAGGCAACAGCTGCGGGTTCGGTATGCGGGGACAGAAGTCCCGGTCCGGACCGGGTGTCCGGCCCGGATTTGAAGGTGGACAGATGCCGCTGTATCGTCGAATTCCCAAGCTCAAGGGAATTGCTGGAGGTATGCGTAAGGGGTTGCCTAAATATGTGCCTGTGAACTTGAAAGATATAGACGATGCAGGGTTTGAAGAAGGAGAAGAAGTTTCGTTAGAGAGTTTGAAGGACAAGGGGTTGATCAACCCTTCGGGGAGAGAGAGGAAACTCCCTTTGAAGATTCTTGGTGATGGGGAACTCAAAGTGAAGCTGAGCTTTAAGGCTCGGGCTTTTTCTGCAGCGGCGAAGGAGAAGCTTGAGGCTGCTGGCTGTAGTCTCACTGTTTTACCAGGCCGGAAGAAGTGGGTAAAGCCATCAGTTGCTAAGAACATTGCCCGTGCTGACGAATACTTTGCCAAGAAAAGAGCAGCCGCAGCTGCTGCTGCTGAATCTCCATCTGCTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000311 GO:0000313 GO:0000315 GO:0003674 GO:0003735 GO:0005198 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005840 GO:0006412 GO:0006518 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009507 GO:0009526 GO:0009532 GO:0009536 GO:0009547 GO:0009570 GO:0009719 GO:0009725 GO:0009735 GO:0009941 GO:0009987 GO:0010033 GO:0010467 GO:0015934 GO:0019538 GO:0031967 GO:0031975 GO:0032991 GO:0034641 GO:0034645 GO:0042221 GO:0043043 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044391 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0050896 GO:0071704 GO:1901564 GO:1901566 GO:1901576 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosomal_L27A

Protein Analysis

265

Amino Acids

27.98

Weight (kDa)

10.64

Isoelectric Point (pI)

45.78

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ribosomal_L27A	PF00828	151 - 224	1.4e-15	Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0014321)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G25920
fragaria_vesca	FvH4_4g27310
malus_domestica	MD13G1041400.v1.1 MD16G1042300.v1.1
prunus_persica	Prupe.1G311800_v2.0.a1 Prupe.1G311800_v2.0.a1
pyrus_communis	pycom13g03590
rosa_chinensis	RchiOBHm_Chr4g0435111
rosa_laevigata	RLG00000006619
rosa_multiflora	Rmu_sc0000400.1_g000009
rosa_roxburghii	Rroxscaffold_5G00376320
rosa_rugosa	Rorug04G0282400
rosa_samantha	Rh4AG337900 Rh4BG346000 Rh4CG360500 Rh4DG340400
rosa_wichuraiana	Rw4G029460

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	16
AccII	CGCG	1 cut(s)	179
AccIII	TCCGGA	1 cut(s)	338
AcoI	YGGCCR	1 cut(s)	174
AcsI	RAATTY	1 cut(s)	393
AfiI	CCNNNNNNNGG	2 cut(s)	65, 242
AgsI	TTSAA	7 cut(s)	64, 102, 365, 463, 488, 520, 571
AhdI	GACNNNNNGTC	1 cut(s)	347
AjnI	CCWGG	1 cut(s)	682
AjuI	GAANNNNNNNTTGG	2 cut(s)	82, 114
AluBI	AGCT	8 cut(s)	93, 154, 303, 403, 604, 609, 649, 770
AluI	AGCT	8 cut(s)	93, 154, 303, 403, 604, 609, 649, 770
Alw26I	GTCTC	1 cut(s)	674
AlwNI	CAGNNNCTG	1 cut(s)	773
Ama87I	CYCGRG	2 cut(s)	242, 618
Aor13HI	TCCGGA	1 cut(s)	338
AoxI	GGCC	5 cut(s)	86, 174, 232, 353, 685
ApaI	GGGCCC	1 cut(s)	236
ApoI	RAATTY	1 cut(s)	393
ArsI	GACNNNNNNTTYG	2 cut(s)	728, 760
AspS9I	GGNCC	6 cut(s)	232, 233, 246, 336, 341, 354
AsuC2I	CCSGG	5 cut(s)	243, 244, 334, 345, 357
AsuHPI	GGTGA	1 cut(s)	593
AvaI	CYCGRG	2 cut(s)	242, 618
AvaII	GGWCC	3 cut(s)	246, 336, 341
BaeGI	GKGCMC	1 cut(s)	236
BanII	GRGCYC	2 cut(s)	196, 236
BbsI	GAAGAC	1 cut(s)	154
BccI	CCATC	3 cut(s)	578, 715, 796
BcgI	CGANNNNNNTGC	2 cut(s)	728, 762
BciT130I	CCWGG	1 cut(s)	684
BclI	TGATCA	1 cut(s)	534
BcnI	CCSGG	5 cut(s)	243, 244, 334, 345, 357
BcoDI	GTCTC	1 cut(s)	674
BfmI	CTRYAG	2 cut(s)	630, 664
BlpI	GCTNAGC	1 cut(s)	605
Bme1390I	CCNGG	6 cut(s)	243, 244, 334, 345, 357, 684
Bme18I	GGWCC	3 cut(s)	246, 336, 341
BmeRI	GACNNNNNGTC	1 cut(s)	347
BmeT110I	CYCGRG	2 cut(s)	242, 618
BmgT120I	GGNCC	6 cut(s)	232, 233, 246, 336, 341, 354
BmiI	GGNNCC	3 cut(s)	195, 234, 247
BmrFI	CCNGG	6 cut(s)	243, 244, 334, 345, 357, 684
BmrI	ACTGGG	1 cut(s)	210
BmsI	GCATC	2 cut(s)	366, 466
BmuI	ACTGGG	1 cut(s)	210
BoxI	GACNNNNGTC	1 cut(s)	328
BpiI	GAAGAC	1 cut(s)	154
BpmI	CTGGAG	1 cut(s)	438
Bpu1102I	GCTNAGC	1 cut(s)	605
BpuEI	CTTGAG	4 cut(s)	98, 103, 389, 671
BpuMI	CCSGG	5 cut(s)	243, 244, 334, 345, 357
BsaJI	CCNNGG	2 cut(s)	177, 242
BsaWI	WCCGGW	2 cut(s)	210, 338
BsaXI	ACNNNNNCTCC	8 cut(s)	109, 112, 115, 139, 142, 145, 486, 516
Bsc4I	CCNNNNNNNGG	2 cut(s)	65, 242
Bse1I	ACTGG	1 cut(s)	205
Bse3DI	GCAATG	1 cut(s)	723
BseAI	TCCGGA	1 cut(s)	338
BseBI	CCWGG	1 cut(s)	684
BseDI	CCNNGG	2 cut(s)	177, 242
BseLI	CCNNNNNNNGG	2 cut(s)	65, 242
BseMI	GCAATG	1 cut(s)	723
BseMII	CTCAG	2 cut(s)	155, 596
BseNI	ACTGG	1 cut(s)	205
BseRI	GAGGAG	5 cut(s)	117, 120, 123, 126, 129
BseSI	GKGCMC	1 cut(s)	236
BseX3I	CGGCCG	1 cut(s)	174
BseYI	CCCAGC	1 cut(s)	287
Bsh1236I	CGCG	1 cut(s)	179
Bsh1285I	CGRYCG	1 cut(s)	177
BshFI	GGCC	5 cut(s)	88, 176, 234, 355, 687
BsiEI	CGRYCG	1 cut(s)	177
BsiHKCI	CYCGRG	2 cut(s)	242, 618
BsiSI	CCGG	8 cut(s)	211, 243, 334, 339, 344, 352, 357, 688
BslFI	GGGAC	2 cut(s)	316, 336
BslI	CCNNNNNNNGG	2 cut(s)	65, 242
BsmAI	GTCTC	1 cut(s)	674
BsmFI	GGGAC	2 cut(s)	316, 336
BsnI	GGCC	5 cut(s)	88, 176, 234, 355, 687
BsoBI	CYCGRG	2 cut(s)	242, 618
Bsp120I	GGGCCC	1 cut(s)	232
Bsp1286I	GDGCHC	2 cut(s)	196, 236
Bsp13I	TCCGGA	1 cut(s)	338
Bsp143I	GATC	1 cut(s)	534
Bsp1720I	GCTNAGC	1 cut(s)	605
BspANI	GGCC	5 cut(s)	88, 176, 234, 355, 687
BspCNI	CTCAG	2 cut(s)	154, 597
BspEI	TCCGGA	1 cut(s)	338
BspFNI	CGCG	1 cut(s)	179
BspLI	GGNNCC	3 cut(s)	195, 234, 247
BspMAI	CTGCAG	1 cut(s)	634
BsrBI	CCGCTC	1 cut(s)	16
BsrDI	GCAATG	1 cut(s)	723
BsrI	ACTGG	1 cut(s)	205
BssECI	CCNNGG	2 cut(s)	177, 242
BssMI	GATC	1 cut(s)	534
Bst2UI	CCWGG	1 cut(s)	684
Bst4CI	ACNGT	1 cut(s)	676
Bst6I	CTCTTC	1 cut(s)	268
BstAPI	GCANNNNNTGC	2 cut(s)	303, 773
BstC8I	GCNNGC	2 cut(s)	236, 661
BstDEI	CTNAG	4 cut(s)	141, 605, 717, 795
BstDSI	CCRYGG	1 cut(s)	177
BstFNI	CGCG	1 cut(s)	179
BstKTI	GATC	1 cut(s)	537
BstMAI	GTCTC	1 cut(s)	674
BstMBI	GATC	1 cut(s)	534
BstMCI	CGRYCG	1 cut(s)	177
BstMWI	GCNNNNNNNGC	7 cut(s)	179, 303, 629, 767, 770, 773, 776
BstNI	CCWGG	1 cut(s)	684
BstPAI	GACNNNNGTC	1 cut(s)	328
BstSCI	CCNGG	6 cut(s)	241, 242, 332, 343, 355, 682
BstSFI	CTRYAG	2 cut(s)	630, 664
BstSLI	GKGCMC	1 cut(s)	236
BstUI	CGCG	1 cut(s)	179
BstV2I	GAAGAC	1 cut(s)	154
BstZI	CGGCCG	1 cut(s)	174
BsuRI	GGCC	5 cut(s)	88, 176, 234, 355, 687
BtgI	CCRYGG	1 cut(s)	177
BtsIMutI	CAGTG	1 cut(s)	672
Cac8I	GCNNGC	2 cut(s)	236, 661
CaiI	CAGNNNCTG	1 cut(s)	773
CciNI	GCGGCCGC	1 cut(s)	174
Cfr13I	GGNCC	6 cut(s)	232, 233, 246, 336, 341, 354
Cfr42I	CCGCGG	1 cut(s)	180
Cfr9I	CCCGGG	1 cut(s)	242
CpoI	CGGWCCG	2 cut(s)	336, 341
CspI	CGGWCCG	2 cut(s)	336, 341
DdeI	CTNAG	4 cut(s)	141, 605, 717, 795
DpnI	GATC	1 cut(s)	536
DpnII	GATC	1 cut(s)	534
DriI	GACNNNNNGTC	1 cut(s)	347
EaeI	YGGCCR	1 cut(s)	174
EagI	CGGCCG	1 cut(s)	174
Eam1104I	CTCTTC	1 cut(s)	268
Eam1105I	GACNNNNNGTC	1 cut(s)	347
EarI	CTCTTC	1 cut(s)	268
EclXI	CGGCCG	1 cut(s)	174
Eco24I	GRGCYC	2 cut(s)	196, 236
Eco47I	GGWCC	3 cut(s)	246, 336, 341
Eco52I	CGGCCG	1 cut(s)	174
Eco88I	CYCGRG	2 cut(s)	242, 618
EcoRI	GAATTC	1 cut(s)	393
EcoRII	CCWGG	1 cut(s)	682
EcoT38I	GRGCYC	2 cut(s)	196, 236
FaiI	YATR	5 cut(s)	97, 317, 425, 447, 470
FalI	AAGNNNNNCTT	2 cut(s)	593, 625
FaqI	GGGAC	2 cut(s)	316, 336
FauI	CCCGC	5 cut(s)	21, 43, 243, 299, 312
FbaI	TGATCA	1 cut(s)	534
FriOI	GRGCYC	2 cut(s)	196, 236
GsaI	CCCAGC	1 cut(s)	291
GsuI	CTGGAG	1 cut(s)	438
HaeIII	GGCC	5 cut(s)	88, 176, 234, 355, 687
HapII	CCGG	8 cut(s)	211, 243, 334, 339, 344, 352, 357, 688
HindIII	AAGCTT	2 cut(s)	91, 647
HinfI	GANTC	3 cut(s)	124, 574, 782
HpaII	CCGG	8 cut(s)	211, 243, 334, 339, 344, 352, 357, 688
HphI	GGTGA	1 cut(s)	593
Hpy166II	GTNNAC	3 cut(s)	166, 371, 457
Hpy188I	TCNGA	2 cut(s)	144, 198
Hpy188III	TCNNGA	3 cut(s)	115, 249, 339
Hpy8I	GTNNAC	3 cut(s)	166, 371, 457
Hpy99I	CGWCG	2 cut(s)	124, 393
HpyAV	CCTTC	7 cut(s)	60, 250, 359, 485, 514, 552, 634
HpyCH4III	ACNGT	1 cut(s)	676
HpyCH4IV	ACGT	1 cut(s)	207
HpyCH4V	TGCA	2 cut(s)	479, 632
HpyF10VI	GCNNNNNNNGC	7 cut(s)	179, 303, 629, 767, 770, 773, 776
HpyF3I	CTNAG	4 cut(s)	141, 605, 717, 795
HpySE526I	ACGT	1 cut(s)	207
Kpn2I	TCCGGA	1 cut(s)	338
Ksp22I	TGATCA	1 cut(s)	534
KspI	CCGCGG	1 cut(s)	180
Kzo9I	GATC	1 cut(s)	534
LmnI	GCTCC	1 cut(s)	199
LweI	GCATC	2 cut(s)	366, 466
MaeII	ACGT	1 cut(s)	207
MalI	GATC	1 cut(s)	536
MbiI	CCGCTC	1 cut(s)	16
MboI	GATC	1 cut(s)	534
MboII	GAAGA	7 cut(s)	45, 159, 285, 500, 509, 583, 703
MhlI	GDGCHC	2 cut(s)	196, 236
MluCI	AATT	3 cut(s)	226, 393, 411
MlyI	GAGTC	1 cut(s)	118
MmeI	TCCRAC	1 cut(s)	221
MroI	TCCGGA	1 cut(s)	338
MseI	TTAA	1 cut(s)	612
MspA1I	CMGCKG	6 cut(s)	154, 179, 303, 382, 635, 770
MspI	CCGG	8 cut(s)	211, 243, 334, 339, 344, 352, 357, 688
MspR9I	CCNGG	6 cut(s)	243, 244, 334, 345, 357, 684
MvaI	CCWGG	1 cut(s)	684
MvnI	CGCG	1 cut(s)	179
MwoI	GCNNNNNNNGC	7 cut(s)	179, 303, 629, 767, 770, 773, 776
NciI	CCSGG	5 cut(s)	243, 244, 334, 345, 357
NdeII	GATC	1 cut(s)	534
NlaIV	GGNNCC	3 cut(s)	195, 234, 247
NotI	GCGGCCGC	1 cut(s)	174
PcsI	WCGNNNNNNNCGW	1 cut(s)	116
PfeI	GAWTC	2 cut(s)	574, 782
PleI	GAGTC	1 cut(s)	118
PpsI	GAGTC	1 cut(s)	118
PshAI	GACNNNNGTC	1 cut(s)	328
Psp6I	CCWGG	1 cut(s)	682
PspFI	CCCAGC	1 cut(s)	287
PspGI	CCWGG	1 cut(s)	682
PspN4I	GGNNCC	3 cut(s)	195, 234, 247
PspOMI	GGGCCC	1 cut(s)	232
PspPI	GGNCC	6 cut(s)	232, 233, 246, 336, 341, 354
PstI	CTGCAG	1 cut(s)	634
PstNI	CAGNNNCTG	1 cut(s)	773
PvuII	CAGCTG	3 cut(s)	154, 303, 770
Rsr2I	CGGWCCG	2 cut(s)	336, 341
RsrII	CGGWCCG	2 cut(s)	336, 341
SacII	CCGCGG	1 cut(s)	180
SaqAI	TTAA	1 cut(s)	612
Sau3AI	GATC	1 cut(s)	534
Sau96I	GGNCC	6 cut(s)	232, 233, 246, 336, 341, 354
SchI	GAGTC	1 cut(s)	118
ScrFI	CCNGG	6 cut(s)	243, 244, 334, 345, 357, 684
SduI	GDGCHC	2 cut(s)	196, 236
SfaNI	GCATC	2 cut(s)	366, 466
SfcI	CTRYAG	2 cut(s)	630, 664
Sfr303I	CCGCGG	1 cut(s)	180
SgrBI	CCGCGG	1 cut(s)	180
SinI	GGWCC	3 cut(s)	246, 336, 341
SmaI	CCCGGG	1 cut(s)	244
SmlI	CTYRAG	4 cut(s)	82, 113, 404, 650
SmoI	CTYRAG	4 cut(s)	82, 113, 404, 650
Sse9I	AATT	3 cut(s)	226, 393, 411
StyD4I	CCNGG	6 cut(s)	241, 242, 332, 343, 355, 682
TaaI	ACNGT	1 cut(s)	676
TaiI	ACGT	1 cut(s)	210
TaqI	TCGA	1 cut(s)	391
TasI	AATT	3 cut(s)	226, 393, 411
TauI	GCSGC	6 cut(s)	176, 179, 182, 382, 638, 767
TfiI	GAWTC	2 cut(s)	574, 782
Tru1I	TTAA	1 cut(s)	612
Tru9I	TTAA	1 cut(s)	612
TscAI	CASTG	1 cut(s)	679
TspMI	CCCGGG	1 cut(s)	242
TspRI	CASTG	1 cut(s)	679
VpaK11BI	GGWCC	3 cut(s)	246, 336, 341
XapI	RAATTY	1 cut(s)	393
XmaI	CCCGGG	1 cut(s)	242

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.