Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb4

Orthogroup ID

OG0014321

Physical Location & Seq

Genomic Coordinates Forward (+)

28360236 .. 28362775

Gene Structure 2540 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_4g27310.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 783 bp

ATGGCAGCGTCCCCGCTCTTTCTTTCTTCAAGCAGCCCAGCCCTGCGTTTCCCTTCTTCGCCATTCAAGGGAAATGTGAGCAGCTTGAGGCCAAGCTCATGCTCAATCCCCTCGCTCAAAACGACGACGAAGAGACAGCTGGTGGTTGTGAACAAGGCGGCCGCGGCCGCAGCCGGGGCTCCGGTTGGGAGCGTCCGGTTCAGGCTGGACAACTTGGGCCCGCAACCCGGGTCCAGAAAGAAGGGGAAGAGAAAGGGAAGAGGTATTGCTGCTGGCCAAGGCAACAGCTGCGGGTTCGGTATGCGTGGCCAGAAGTCCCGGTCCGGACCGGGCGTCCGGCCCGGATTTGAAGGGGGACAGATGCCGCTCTATCGTCGGATTCCCAAGCTTAAGGGAATTGCTGGGGGTATGCGGAAGGGGTTGCCGAAATATGTGCCTGTGAACTTGAAAGACATAGAAGATGCAGGGTTTCAAGACGGAGAAGAGGTTTCGTTGGAAAGTTTGAAGGACAAGGGGTTGATCAACCCGTCGGGGAGAGAGAGGAAGCTCCCTTTGAAGATTCTTGGTGATGGGGAACTCAAAGTAAAGCTGAGTTTTAAGGCTCGGGCTTTTTCTGCAGCGGCAAAGGAGAAGCTTGAGGCTGCTGGCTGTAGTCTCACCGTTTTGCCTGGCAGGAAGAAGTGGGTAAAGCCATCAGTTGCTAAGAACATTGCCCGTGCTGACGAATACTTTGCCAAGAAGAGAGCAGCCGCAGCTGCTGCTGCTGAATCACCATCTGCCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000311 GO:0000313 GO:0000315 GO:0003674 GO:0003735 GO:0005198 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005840 GO:0006412 GO:0006518 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009507 GO:0009526 GO:0009532 GO:0009536 GO:0009547 GO:0009570 GO:0009719 GO:0009725 GO:0009735 GO:0009941 GO:0009987 GO:0010033 GO:0010467 GO:0015934 GO:0019538 GO:0031967 GO:0031975 GO:0032991 GO:0034641 GO:0034645 GO:0042221 GO:0043043 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044391 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0050896 GO:0071704 GO:1901564 GO:1901566 GO:1901576 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosomal_L27A

Protein Analysis

261

Amino Acids

27.28

Weight (kDa)

10.65

Isoelectric Point (pI)

48.6

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ribosomal_L27A	PF00828	146 - 219	3.2e-15	Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0014321)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G25920
fragaria_vesca	FvH4_4g27310
malus_domestica	MD13G1041400.v1.1 MD16G1042300.v1.1
prunus_persica	Prupe.1G311800_v2.0.a1 Prupe.1G311800_v2.0.a1
pyrus_communis	pycom13g03590
rosa_chinensis	RchiOBHm_Chr4g0435111
rosa_laevigata	RLG00000006619
rosa_multiflora	Rmu_sc0000400.1_g000009
rosa_roxburghii	Rroxscaffold_5G00376320
rosa_rugosa	Rorug04G0282400
rosa_samantha	Rh4AG337900 Rh4BG346000 Rh4CG360500 Rh4DG340400
rosa_wichuraiana	Rw4G029460

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	2 cut(s)	16, 367
AccII	CGCG	1 cut(s)	164
AccIII	TCCGGA	1 cut(s)	323
AcoI	YGGCCR	4 cut(s)	159, 165, 274, 307
AcyI	GRCGYC	1 cut(s)	333
AfiI	CCNNNNNNNGG	3 cut(s)	68, 174, 227
AflII	CTTAAG	1 cut(s)	389
AgsI	TTSAA	7 cut(s)	30, 67, 350, 448, 473, 505, 556
AhdI	GACNNNNNGTC	1 cut(s)	332
AjnI	CCWGG	1 cut(s)	667
AluBI	AGCT	9 cut(s)	84, 96, 139, 288, 388, 547, 589, 634, 755
AluI	AGCT	9 cut(s)	84, 96, 139, 288, 388, 547, 589, 634, 755
Alw26I	GTCTC	2 cut(s)	127, 659
AlwNI	CAGNNNCTG	1 cut(s)	758
Ama87I	CYCGRG	2 cut(s)	227, 603
Aor13HI	TCCGGA	1 cut(s)	323
AoxI	GGCC	7 cut(s)	89, 159, 165, 217, 274, 307, 338
ApaI	GGGCCC	1 cut(s)	221
ArsI	GACNNNNNNTTYG	2 cut(s)	713, 745
AspS9I	GGNCC	6 cut(s)	217, 218, 231, 321, 326, 339
AsuC2I	CCSGG	6 cut(s)	175, 228, 229, 319, 330, 342
AsuHPI	GGTGA	3 cut(s)	578, 649, 762
AvaI	CYCGRG	2 cut(s)	227, 603
AvaII	GGWCC	3 cut(s)	231, 321, 326
BaeGI	GKGCMC	1 cut(s)	221
BalI	TGGCCA	2 cut(s)	276, 309
BanII	GRGCYC	2 cut(s)	181, 221
BccI	CCATC	3 cut(s)	563, 700, 781
BcgI	CGANNNNNNTGC	4 cut(s)	415, 449, 713, 747
BciT130I	CCWGG	1 cut(s)	669
BclI	TGATCA	1 cut(s)	519
BcnI	CCSGG	6 cut(s)	175, 228, 229, 319, 330, 342
BcoDI	GTCTC	2 cut(s)	127, 659
BfmI	CTRYAG	2 cut(s)	615, 649
BfrI	CTTAAG	1 cut(s)	389
Bme1390I	CCNGG	7 cut(s)	175, 228, 229, 319, 330, 342, 669
Bme18I	GGWCC	3 cut(s)	231, 321, 326
BmeRI	GACNNNNNGTC	1 cut(s)	332
BmeT110I	CYCGRG	2 cut(s)	227, 603
BmgT120I	GGNCC	6 cut(s)	217, 218, 231, 321, 326, 339
BmiI	GGNNCC	3 cut(s)	180, 219, 232
BmrFI	CCNGG	7 cut(s)	175, 228, 229, 319, 330, 342, 669
BmsI	GCATC	2 cut(s)	351, 451
BpuEI	CTTGAG	2 cut(s)	106, 656
BpuMI	CCSGG	6 cut(s)	175, 228, 229, 319, 330, 342
BsaHI	GRCGYC	1 cut(s)	333
BsaJI	CCNNGG	4 cut(s)	162, 174, 227, 277
BsaWI	WCCGGW	3 cut(s)	181, 195, 323
BsaXI	ACNNNNNCTCC	2 cut(s)	471, 501
Bsc4I	CCNNNNNNNGG	3 cut(s)	68, 174, 227
Bse3DI	GCAATG	1 cut(s)	708
BseAI	TCCGGA	1 cut(s)	323
BseBI	CCWGG	1 cut(s)	669
BseDI	CCNNGG	4 cut(s)	162, 174, 227, 277
BseLI	CCNNNNNNNGG	3 cut(s)	68, 174, 227
BseMI	GCAATG	1 cut(s)	708
BseMII	CTCAG	1 cut(s)	581
BseSI	GKGCMC	1 cut(s)	221
BseX3I	CGGCCG	2 cut(s)	159, 165
BseYI	CCCAGC	2 cut(s)	37, 401
Bsh1236I	CGCG	1 cut(s)	164
Bsh1285I	CGRYCG	2 cut(s)	162, 168
BshFI	GGCC	7 cut(s)	91, 161, 167, 219, 276, 309, 340
BsiEI	CGRYCG	2 cut(s)	162, 168
BsiHKCI	CYCGRG	2 cut(s)	227, 603
BsiSI	CCGG	9 cut(s)	174, 182, 196, 228, 319, 324, 329, 337, 342
BslFI	GGGAC	2 cut(s)	301, 369
BslI	CCNNNNNNNGG	3 cut(s)	68, 174, 227
BsmAI	GTCTC	2 cut(s)	127, 659
BsmFI	GGGAC	2 cut(s)	301, 369
BsnI	GGCC	7 cut(s)	91, 161, 167, 219, 276, 309, 340
BsoBI	CYCGRG	2 cut(s)	227, 603
Bsp120I	GGGCCC	1 cut(s)	217
Bsp1286I	GDGCHC	2 cut(s)	181, 221
Bsp13I	TCCGGA	1 cut(s)	323
Bsp143I	GATC	1 cut(s)	519
BspANI	GGCC	7 cut(s)	91, 161, 167, 219, 276, 309, 340
BspCNI	CTCAG	1 cut(s)	582
BspEI	TCCGGA	1 cut(s)	323
BspFNI	CGCG	1 cut(s)	164
BspLI	GGNNCC	3 cut(s)	180, 219, 232
BspMAI	CTGCAG	1 cut(s)	619
BspTI	CTTAAG	1 cut(s)	389
BsrBI	CCGCTC	2 cut(s)	16, 367
BsrDI	GCAATG	1 cut(s)	708
BssECI	CCNNGG	4 cut(s)	162, 174, 227, 277
BssMI	GATC	1 cut(s)	519
BssNI	GRCGYC	1 cut(s)	333
BssT1I	CCWWGG	1 cut(s)	277
Bst2UI	CCWGG	1 cut(s)	669
Bst4CI	ACNGT	1 cut(s)	661
Bst6I	CTCTTC	5 cut(s)	125, 242, 253, 477, 734
BstACI	GRCGYC	1 cut(s)	333
BstAFI	CTTAAG	1 cut(s)	389
BstAPI	GCANNNNNTGC	2 cut(s)	288, 758
BstC8I	GCNNGC	3 cut(s)	221, 274, 646
BstDEI	CTNAG	2 cut(s)	590, 702
BstDSI	CCRYGG	1 cut(s)	162
BstFNI	CGCG	1 cut(s)	164
BstKTI	GATC	1 cut(s)	522
BstMAI	GTCTC	2 cut(s)	127, 659
BstMBI	GATC	1 cut(s)	519
BstMCI	CGRYCG	2 cut(s)	162, 168
BstNI	CCWGG	1 cut(s)	669
BstSCI	CCNGG	7 cut(s)	173, 226, 227, 317, 328, 340, 667
BstSFI	CTRYAG	2 cut(s)	615, 649
BstSLI	GKGCMC	1 cut(s)	221
BstUI	CGCG	1 cut(s)	164
BstZI	CGGCCG	2 cut(s)	159, 165
BsuRI	GGCC	7 cut(s)	91, 161, 167, 219, 276, 309, 340
BtgI	CCRYGG	1 cut(s)	162
Cac8I	GCNNGC	3 cut(s)	221, 274, 646
CaiI	CAGNNNCTG	1 cut(s)	758
CciNI	GCGGCCGC	2 cut(s)	159, 165
Cfr13I	GGNCC	6 cut(s)	217, 218, 231, 321, 326, 339
Cfr42I	CCGCGG	1 cut(s)	165
Cfr9I	CCCGGG	1 cut(s)	227
CpoI	CGGWCCG	2 cut(s)	321, 326
CseI	GACGC	2 cut(s)	181, 322
CspI	CGGWCCG	2 cut(s)	321, 326
CviAII	CATG	1 cut(s)	99
DdeI	CTNAG	2 cut(s)	590, 702
DpnI	GATC	1 cut(s)	521
DpnII	GATC	1 cut(s)	519
DriI	GACNNNNNGTC	1 cut(s)	332
EaeI	YGGCCR	4 cut(s)	159, 165, 274, 307
EagI	CGGCCG	2 cut(s)	159, 165
Eam1104I	CTCTTC	5 cut(s)	125, 242, 253, 477, 734
Eam1105I	GACNNNNNGTC	1 cut(s)	332
EarI	CTCTTC	5 cut(s)	125, 242, 253, 477, 734
EclXI	CGGCCG	2 cut(s)	159, 165
Eco130I	CCWWGG	1 cut(s)	277
Eco24I	GRGCYC	2 cut(s)	181, 221
Eco47I	GGWCC	3 cut(s)	231, 321, 326
Eco52I	CGGCCG	2 cut(s)	159, 165
Eco88I	CYCGRG	2 cut(s)	227, 603
EcoRII	CCWGG	1 cut(s)	667
EcoT14I	CCWWGG	1 cut(s)	277
EcoT38I	GRGCYC	2 cut(s)	181, 221
ErhI	CCWWGG	1 cut(s)	277
FaeI	CATG	1 cut(s)	102
FaiI	YATR	5 cut(s)	100, 302, 410, 432, 455
FaqI	GGGAC	2 cut(s)	301, 369
FatI	CATG	1 cut(s)	98
FauI	CCCGC	3 cut(s)	21, 228, 284
FbaI	TGATCA	1 cut(s)	519
FriOI	GRGCYC	2 cut(s)	181, 221
GsaI	CCCAGC	2 cut(s)	41, 405
HaeIII	GGCC	7 cut(s)	91, 161, 167, 219, 276, 309, 340
HapII	CCGG	9 cut(s)	174, 182, 196, 228, 319, 324, 329, 337, 342
HgaI	GACGC	2 cut(s)	181, 322
Hin1I	GRCGYC	1 cut(s)	333
Hin1II	CATG	1 cut(s)	102
HindIII	AAGCTT	2 cut(s)	386, 632
HinfI	GANTC	3 cut(s)	379, 559, 767
HpaII	CCGG	9 cut(s)	174, 182, 196, 228, 319, 324, 329, 337, 342
HphI	GGTGA	3 cut(s)	578, 649, 762
Hpy166II	GTNNAC	2 cut(s)	151, 442
Hpy188I	TCNGA	1 cut(s)	378
Hpy188III	TCNNGA	3 cut(s)	234, 324, 473
Hpy8I	GTNNAC	2 cut(s)	151, 442
Hpy99I	CGWCG	4 cut(s)	127, 130, 378, 532
HpyAV	CCTTC	5 cut(s)	63, 235, 344, 409, 499
HpyCH4III	ACNGT	1 cut(s)	661
HpyCH4V	TGCA	2 cut(s)	464, 617
HpyF3I	CTNAG	2 cut(s)	590, 702
Hsp92I	GRCGYC	1 cut(s)	333
Hsp92II	CATG	1 cut(s)	102
Kpn2I	TCCGGA	1 cut(s)	323
Ksp22I	TGATCA	1 cut(s)	519
KspI	CCGCGG	1 cut(s)	165
Kzo9I	GATC	1 cut(s)	519
LmnI	GCTCC	3 cut(s)	184, 189, 552
LweI	GCATC	2 cut(s)	351, 451
MalI	GATC	1 cut(s)	521
MbiI	CCGCTC	2 cut(s)	16, 367
MboI	GATC	1 cut(s)	519
MhlI	GDGCHC	2 cut(s)	181, 221
MlsI	TGGCCA	2 cut(s)	276, 309
MluCI	AATT	1 cut(s)	396
MluNI	TGGCCA	2 cut(s)	276, 309
MmeI	TCCRAC	2 cut(s)	356, 474
MnlI	CCTC	6 cut(s)	81, 121, 254, 478, 534, 631
Mox20I	TGGCCA	2 cut(s)	276, 309
MroI	TCCGGA	1 cut(s)	323
MscI	TGGCCA	2 cut(s)	276, 309
MseI	TTAA	2 cut(s)	390, 597
Msp20I	TGGCCA	2 cut(s)	276, 309
MspA1I	CMGCKG	5 cut(s)	139, 164, 288, 620, 755
MspCI	CTTAAG	1 cut(s)	389
MspI	CCGG	9 cut(s)	174, 182, 196, 228, 319, 324, 329, 337, 342
MspR9I	CCNGG	7 cut(s)	175, 228, 229, 319, 330, 342, 669
MvaI	CCWGG	1 cut(s)	669
MvnI	CGCG	1 cut(s)	164
NciI	CCSGG	6 cut(s)	175, 228, 229, 319, 330, 342
NdeII	GATC	1 cut(s)	519
NlaIII	CATG	1 cut(s)	102
NlaIV	GGNNCC	3 cut(s)	180, 219, 232
NotI	GCGGCCGC	2 cut(s)	159, 165
PcsI	WCGNNNNNNNCGW	1 cut(s)	119
PfeI	GAWTC	3 cut(s)	379, 559, 767
Psp6I	CCWGG	1 cut(s)	667
PspFI	CCCAGC	2 cut(s)	37, 401
PspGI	CCWGG	1 cut(s)	667
PspN4I	GGNNCC	3 cut(s)	180, 219, 232
PspOMI	GGGCCC	1 cut(s)	217
PspPI	GGNCC	6 cut(s)	217, 218, 231, 321, 326, 339
PstI	CTGCAG	1 cut(s)	619
PstNI	CAGNNNCTG	1 cut(s)	758
PvuII	CAGCTG	3 cut(s)	139, 288, 755
Rsr2I	CGGWCCG	2 cut(s)	321, 326
RsrII	CGGWCCG	2 cut(s)	321, 326
SacII	CCGCGG	1 cut(s)	165
SaqAI	TTAA	2 cut(s)	390, 597
Sau3AI	GATC	1 cut(s)	519
Sau96I	GGNCC	6 cut(s)	217, 218, 231, 321, 326, 339
ScrFI	CCNGG	7 cut(s)	175, 228, 229, 319, 330, 342, 669
SduI	GDGCHC	2 cut(s)	181, 221
SfaNI	GCATC	2 cut(s)	351, 451
SfcI	CTRYAG	2 cut(s)	615, 649
Sfr303I	CCGCGG	1 cut(s)	165
SgrBI	CCGCGG	1 cut(s)	165
SinI	GGWCC	3 cut(s)	231, 321, 326
SmaI	CCCGGG	1 cut(s)	229
SmlI	CTYRAG	3 cut(s)	85, 389, 635
SmoI	CTYRAG	3 cut(s)	85, 389, 635
Sse9I	AATT	1 cut(s)	396
StyD4I	CCNGG	7 cut(s)	173, 226, 227, 317, 328, 340, 667
StyI	CCWWGG	1 cut(s)	277
TaaI	ACNGT	1 cut(s)	661
TasI	AATT	1 cut(s)	396
TauI	GCSGC	7 cut(s)	161, 164, 167, 170, 367, 623, 752
TfiI	GAWTC	3 cut(s)	379, 559, 767
Tru1I	TTAA	2 cut(s)	390, 597
Tru9I	TTAA	2 cut(s)	390, 597
TspGWI	ACGGA	1 cut(s)	492
TspMI	CCCGGG	1 cut(s)	227
Vha464I	CTTAAG	1 cut(s)	389
VpaK11BI	GGWCC	3 cut(s)	231, 321, 326
XmaI	CCCGGG	1 cut(s)	227

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.