Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0011393

Physical Location & Seq

Genomic Coordinates Reverse (-)

9506778 .. 9509302

Gene Structure 2525 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT3G26000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1362 bp

ATGGCTTTAAATTTTTCACATAGACCTTTTTCTTCTCATCTATCTGAGGAACCAATGATGATAGCCAATGGGAATTGGTGTTCAAGTTTCGATAATGGAAGGAAGAATACTGGAGGAGATGCTTCTTCTGTTGATATACTTGATGTTTTGCCATCTGATCCGTTTGGTATGGATATCAACAATACTTTCACGGCTATTACTGGATGGCTTGAGGATTTGGAGGATGATTATAATAACCAATATGGAAGAAGAAGAAGAGATGACATTTGGATTGGTGATGGAAACCGTCAGCAGCTGTTTGCTGGATTGAGTTTCTTTTGGAACAATGCAATGCAGTTTCAGAGTAGTGGTTACAGTTATGGATCAGAGTCATTGTTTGGTGGGGCGTTTGATGGGTCTCTGTTTTCCACATGTAAATTCCCTGAAAGTAGTGGGGAAAATAATGGGTTTGGAGGGGCATTAGATGGTGATGGATCTTGTCATGGTGCTTTCATATCTGCTAGTAGTGTTGATGAGGTATTGAGCCATGAGAATGCGAGGAATGGTGAAGTTGTAGGAAGTAGTGATCGCTGCAATAATGGAGAAGAGGATGCGTATGTTCATCCAGCGATTGGTTTTTGTCTTTATCACTTGCGAGGGAAGGATCTTCTTTCAGTTAGTATGGTTTGCAAGTCTTTGCATACTACTGTTTGTGATGACACGTTACTTTGGAAGCATATCCACATTTGTCGACCGTTGAATGAGAAGATCACGGAAGAGGCTCTACTGCATTTAACTGAGAGGGCTCAGGGTACTATGCAGTGTTTGAGGATCGTAGATTGCTGTAGAATTACTGATGATTGTCTTAAGCGGGTGGTGGCGCGCAACCGACAAGTAGTCAAGATTGGTGTGCCTGGATGCACAAGGATAACTATCGATGGTATTTTGAGCGTCTTGAGGGATCTGAAGTCTGCGGGAAAGCTTCAAGTGAAGCATTTACAACTTCGTGGCCTCTTTGGAGTGACTAAAGATCACTACGATGAACTGATTGACTTGTTGAACATTGACAATAAAGTCAAGCAGACTATTCAGAAGCCGCGTTTTTACCATAGAGGAGAAGCTTGTGTGTCCTGTGATGATGACCGGGCACTAGATATTGAGATGTGCCCAAAGTGTCAAAATTTTAAGCTTGTGTATGACTGTCCAGCAGAAGATTGTAAAGGGAAAAAGAAAGGTTCTGAGGAATGCCGTGCTTGTTCTCTTTGCATACAGAGGTGTTATCATTGTGGTCGGTGCATCATTGACACTGAATACGAAGAAATGTTTTGTTTAGAGCTTTTGTGTGCTGTTTGTTCGAAGCCGACCCCTAAGTTAACTCTCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0008150 GO:0009787 GO:0009788 GO:0009966 GO:0009968 GO:0010646 GO:0010648 GO:0023051 GO:0023057 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0048519 GO:0048523 GO:0048583 GO:0048585 GO:0050789 GO:0050794 GO:0065007 GO:1901419 GO:1901420 GO:1905957 GO:1905958

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

F-box F-box-like

Protein Analysis

453

Amino Acids

50.54

Weight (kDa)

5.49

Isoelectric Point (pI)

44.09

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0011393)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G26000
fragaria_vesca	FvH4_4g24590
malus_domestica	MD13G1110000.v1.1 MD16G1109900.v1.1
prunus_persica	Prupe.1G234900_v2.0.a1
pyrus_communis	pycom13g09570 pycom16g09340
rosa_chinensis	RchiOBHm_Chr4g0431591
rosa_laevigata	RLG00000006905
rosa_multiflora	Rmu_sc0008423.1_g000001 Rmu_sc0035802.1_g000001 Rmu_sc0035803.1_g000001 Rmu_ssc0000203.1_g000001
rosa_roxburghii	Rroxscaffold_5G00373050
rosa_rugosa	Rorug04G0251100
rosa_samantha	Rh4AG307800 Rh4BG315400 Rh4CG330900 Rh4DG310300
rosa_wichuraiana	Rw4G026680

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	231
AasI	GACNNNNNNGTC	1 cut(s)	1052
AccB7I	CCANNNNNTGG	1 cut(s)	611
AccI	GTMKAC	1 cut(s)	730
AccII	CGCG	2 cut(s)	862, 1078
AciI	CCGC	3 cut(s)	850, 953, 1076
AclWI	GGATC	6 cut(s)	152, 370, 481, 651, 818, 948
AcsI	RAATTY	3 cut(s)	10, 416, 1159
AcuI	CTGAAG	1 cut(s)	965
AfaI	GTAC	1 cut(s)	793
AfiI	CCNNNNNNNGG	1 cut(s)	611
AflII	CTTAAG	1 cut(s)	845
AflIII	ACRYGT	2 cut(s)	410, 699
AgsI	TTSAA	4 cut(s)	84, 739, 965, 1039
AhdI	GACNNNNNGTC	1 cut(s)	875
AjnI	CCWGG	1 cut(s)	892
AloI	GAACNNNNNNTCC	2 cut(s)	64, 96
AluBI	AGCT	5 cut(s)	295, 961, 1100, 1168, 1315
AluI	AGCT	5 cut(s)	295, 961, 1100, 1168, 1315
Alw26I	GTCTC	1 cut(s)	402
AlwI	GGATC	6 cut(s)	152, 370, 481, 651, 818, 948
AlwNI	CAGNNNCTG	1 cut(s)	295
AoxI	GGCC	1 cut(s)	988
ApeKI	GCWGC	2 cut(s)	292, 570
ApoI	RAATTY	3 cut(s)	10, 416, 1159
AspLEI	GCGC	2 cut(s)	862, 864
AsuC2I	CCSGG	1 cut(s)	1124
AsuHPI	GGTGA	3 cut(s)	287, 479, 557
AsuII	TTCGAA	1 cut(s)	1334
BaeGI	GKGCMC	2 cut(s)	1129, 1148
BanII	GRGCYC	1 cut(s)	787
BarI	GAAGNNNNNNTAC	4 cut(s)	91, 123, 747, 779
BbvI	GCAGC	2 cut(s)	304, 557
BccI	CCATC	7 cut(s)	160, 198, 272, 386, 458, 464, 911
BceAI	ACGGC	2 cut(s)	207, 1212
BciT130I	CCWGG	1 cut(s)	894
BcnI	CCSGG	1 cut(s)	1124
BcoDI	GTCTC	1 cut(s)	402
BfaI	CTAG	3 cut(s)	501, 1130, 1360
BfmI	CTRYAG	1 cut(s)	823
BfrI	CTTAAG	1 cut(s)	845
BisI	GCNGC	3 cut(s)	293, 571, 1076
BlsI	GCNGC	3 cut(s)	294, 572, 1077
Bme1390I	CCNGG	2 cut(s)	894, 1124
BmeRI	GACNNNNNGTC	1 cut(s)	875
BmiI	GGNNCC	1 cut(s)	51
BmrFI	CCNGG	2 cut(s)	894, 1124
BmsI	GCATC	4 cut(s)	109, 580, 887, 1284
BpmI	CTGGAG	1 cut(s)	132
Bpu10I	CCTNAGC	1 cut(s)	786
Bpu14I	TTCGAA	1 cut(s)	1334
BpuEI	CTTGAG	2 cut(s)	230, 955
BpuMI	CCSGG	1 cut(s)	1124
Bsa29I	ATCGAT	1 cut(s)	915
BsaBI	GATNNNNATC	1 cut(s)	911
BsaI	GGTCTC	1 cut(s)	402
Bsc4I	CCNNNNNNNGG	1 cut(s)	611
Bse1I	ACTGG	2 cut(s)	115, 205
Bse3DI	GCAATG	1 cut(s)	336
Bse8I	GATNNNNATC	1 cut(s)	911
BseBI	CCWGG	1 cut(s)	894
BseCI	ATCGAT	1 cut(s)	915
BseGI	GGATG	5 cut(s)	209, 229, 595, 601, 902
BseJI	GATNNNNATC	1 cut(s)	911
BseLI	CCNNNNNNNGG	1 cut(s)	611
BseMI	GCAATG	1 cut(s)	336
BseMII	CTCAG	4 cut(s)	36, 768, 800, 1209
BseNI	ACTGG	2 cut(s)	115, 205
BsePI	GCGCGC	1 cut(s)	860
BseRI	GAGGAG	2 cut(s)	129, 1107
BseSI	GKGCMC	2 cut(s)	1129, 1148
BseXI	GCAGC	2 cut(s)	304, 557
Bsh1236I	CGCG	2 cut(s)	862, 1078
Bsh1285I	CGRYCG	1 cut(s)	734
BshFI	GGCC	1 cut(s)	990
BshVI	ATCGAT	1 cut(s)	915
BsiEI	CGRYCG	1 cut(s)	734
BsiSI	CCGG	1 cut(s)	1123
BslI	CCNNNNNNNGG	1 cut(s)	611
BsmAI	GTCTC	1 cut(s)	402
BsmI	GAATGC	2 cut(s)	538, 1229
BsnI	GGCC	1 cut(s)	990
Bso31I	GGTCTC	1 cut(s)	402
Bsp119I	TTCGAA	1 cut(s)	1334
Bsp1286I	GDGCHC	3 cut(s)	787, 1129, 1148
Bsp143I	GATC	9 cut(s)	157, 362, 473, 565, 643, 747, 810, 940, 1009
BspACI	CCGC	3 cut(s)	850, 953, 1076
BspANI	GGCC	1 cut(s)	990
BspCNI	CTCAG	4 cut(s)	37, 769, 799, 1210
BspDI	ATCGAT	1 cut(s)	915
BspFNI	CGCG	2 cut(s)	862, 1078
BspLI	GGNNCC	1 cut(s)	51
BspPI	GGATC	6 cut(s)	152, 370, 481, 651, 818, 948
BspT104I	TTCGAA	1 cut(s)	1334
BspTI	CTTAAG	1 cut(s)	845
BspTNI	GGTCTC	1 cut(s)	402
BsrDI	GCAATG	1 cut(s)	336
BsrI	ACTGG	2 cut(s)	115, 205
BssHII	GCGCGC	1 cut(s)	860
BssMI	GATC	9 cut(s)	157, 362, 473, 565, 643, 747, 810, 940, 1009
Bst2UI	CCWGG	1 cut(s)	894
Bst4CI	ACNGT	5 cut(s)	287, 356, 688, 735, 1181
Bst6I	CTCTTC	3 cut(s)	250, 579, 750
BstAFI	CTTAAG	1 cut(s)	845
BstBI	TTCGAA	1 cut(s)	1334
BstC8I	GCNNGC	1 cut(s)	862
BstDEI	CTNAG	5 cut(s)	45, 777, 786, 1218, 1347
BstF5I	GGATG	5 cut(s)	209, 229, 595, 601, 902
BstFNI	CGCG	2 cut(s)	862, 1078
BstHHI	GCGC	2 cut(s)	862, 864
BstKTI	GATC	9 cut(s)	160, 365, 476, 568, 646, 750, 813, 943, 1012
BstMAI	GTCTC	1 cut(s)	402
BstMBI	GATC	9 cut(s)	157, 362, 473, 565, 643, 747, 810, 940, 1009
BstMCI	CGRYCG	1 cut(s)	734
BstNI	CCWGG	1 cut(s)	894
BstNSI	RCATGY	1 cut(s)	414
BstSCI	CCNGG	2 cut(s)	892, 1122
BstSFI	CTRYAG	1 cut(s)	823
BstSLI	GKGCMC	2 cut(s)	1129, 1148
BstUI	CGCG	2 cut(s)	862, 1078
BstV1I	GCAGC	2 cut(s)	304, 557
BstX2I	RGATCY	3 cut(s)	473, 643, 940
BstYI	RGATCY	3 cut(s)	473, 643, 940
Bsu15I	ATCGAT	1 cut(s)	915
BsuRI	GGCC	1 cut(s)	990
BsuTUI	ATCGAT	1 cut(s)	915
BtsCI	GGATG	5 cut(s)	209, 229, 595, 601, 902
BtsI	GCAGTG	1 cut(s)	806
BtsIMutI	CAGTG	2 cut(s)	806, 1284
Cac8I	GCNNGC	1 cut(s)	862
CaiI	CAGNNNCTG	1 cut(s)	295
CfoI	GCGC	2 cut(s)	862, 864
ClaI	ATCGAT	1 cut(s)	915
CseI	GACGC	1 cut(s)	919
Csp6I	GTAC	1 cut(s)	792
CviAII	CATG	3 cut(s)	411, 482, 527
CviQI	GTAC	1 cut(s)	792
DdeI	CTNAG	5 cut(s)	45, 777, 786, 1218, 1347
DpnI	GATC	9 cut(s)	159, 364, 475, 567, 645, 749, 812, 942, 1011
DpnII	GATC	9 cut(s)	157, 362, 473, 565, 643, 747, 810, 940, 1009
DraI	TTTAAA	1 cut(s)	9
DrdI	GACNNNNNNGTC	1 cut(s)	1052
DriI	GACNNNNNGTC	1 cut(s)	875
DseDI	GACNNNNNNGTC	1 cut(s)	1052
Eam1104I	CTCTTC	3 cut(s)	250, 579, 750
Eam1105I	GACNNNNNGTC	1 cut(s)	875
EarI	CTCTTC	3 cut(s)	250, 579, 750
Eco24I	GRGCYC	1 cut(s)	787
Eco31I	GGTCTC	1 cut(s)	402
Eco32I	GATATC	1 cut(s)	175
Eco57I	CTGAAG	1 cut(s)	965
EcoRII	CCWGG	1 cut(s)	892
EcoRV	GATATC	1 cut(s)	175
EcoT38I	GRGCYC	1 cut(s)	787
FaeI	CATG	3 cut(s)	414, 485, 530
FatI	CATG	3 cut(s)	410, 481, 526
FauI	CCCGC	2 cut(s)	843, 946
FblI	GTMKAC	1 cut(s)	730
Fnu4HI	GCNGC	3 cut(s)	293, 571, 1076
FokI	GGATG	5 cut(s)	216, 236, 588, 602, 909
FriOI	GRGCYC	1 cut(s)	787
Fsp4HI	GCNGC	3 cut(s)	293, 571, 1076
FspBI	CTAG	3 cut(s)	501, 1130, 1360
GlaI	GCGC	2 cut(s)	861, 863
GluI	GCNGC	3 cut(s)	293, 571, 1076
GsuI	CTGGAG	1 cut(s)	132
HaeIII	GGCC	1 cut(s)	990
HapII	CCGG	1 cut(s)	1123
HgaI	GACGC	1 cut(s)	919
HhaI	GCGC	2 cut(s)	862, 864
Hin1II	CATG	3 cut(s)	414, 485, 530
Hin6I	GCGC	2 cut(s)	860, 862
HinP1I	GCGC	2 cut(s)	860, 862
HincII	GTYRAC	2 cut(s)	731, 1353
HindII	GTYRAC	2 cut(s)	731, 1353
HindIII	AAGCTT	3 cut(s)	959, 1098, 1166
HinfI	GANTC	1 cut(s)	368
HpaI	GTTAAC	1 cut(s)	1353
HpaII	CCGG	1 cut(s)	1123
HphI	GGTGA	3 cut(s)	287, 479, 557
Hpy166II	GTNNAC	2 cut(s)	731, 1353
Hpy188I	TCNGA	7 cut(s)	46, 157, 342, 367, 945, 1071, 1219
Hpy188III	TCNNGA	2 cut(s)	880, 934
Hpy8I	GTNNAC	2 cut(s)	731, 1353
HpyAV	CCTTC	2 cut(s)	93, 634
HpyCH4III	ACNGT	5 cut(s)	287, 356, 688, 735, 1181
HpyCH4IV	ACGT	1 cut(s)	701
HpyF3I	CTNAG	5 cut(s)	45, 777, 786, 1218, 1347
HpySE526I	ACGT	1 cut(s)	701
Hsp92II	CATG	3 cut(s)	414, 485, 530
HspAI	GCGC	2 cut(s)	860, 862
KspAI	GTTAAC	1 cut(s)	1353
Kzo9I	GATC	9 cut(s)	157, 362, 473, 565, 643, 747, 810, 940, 1009
Lsp1109I	GCAGC	2 cut(s)	304, 557
LweI	GCATC	4 cut(s)	109, 580, 887, 1284
MaeI	CTAG	3 cut(s)	501, 1130, 1360
MaeII	ACGT	1 cut(s)	701
MaeIII	GTNAC	3 cut(s)	350, 702, 1000
MalI	GATC	9 cut(s)	159, 364, 475, 567, 645, 749, 812, 942, 1011
MboI	GATC	9 cut(s)	157, 362, 473, 565, 643, 747, 810, 940, 1009
MflI	RGATCY	3 cut(s)	473, 643, 940
MhlI	GDGCHC	3 cut(s)	787, 1129, 1148
MluCI	AATT	5 cut(s)	10, 73, 416, 828, 1159
MlyI	GAGTC	1 cut(s)	377
MseI	TTAA	5 cut(s)	8, 773, 846, 1164, 1352
MslI	CAYNNNNRTG	2 cut(s)	531, 1017
MspA1I	CMGCKG	1 cut(s)	295
MspCI	CTTAAG	1 cut(s)	845
MspI	CCGG	1 cut(s)	1123
MspR9I	CCNGG	2 cut(s)	894, 1124
Mva1269I	GAATGC	2 cut(s)	538, 1229
MvaI	CCWGG	1 cut(s)	894
MvnI	CGCG	2 cut(s)	862, 1078
NciI	CCSGG	1 cut(s)	1124
NdeII	GATC	9 cut(s)	157, 362, 473, 565, 643, 747, 810, 940, 1009
NlaIII	CATG	3 cut(s)	414, 485, 530
NlaIV	GGNNCC	1 cut(s)	51
NmuCI	GTSAC	1 cut(s)	1000
NspI	RCATGY	1 cut(s)	414
NspV	TTCGAA	1 cut(s)	1334
PauI	GCGCGC	1 cut(s)	860
PciI	ACATGT	1 cut(s)	410
PctI	GAATGC	2 cut(s)	538, 1229
PflMI	CCANNNNNTGG	1 cut(s)	611
PkrI	GCNGC	3 cut(s)	294, 572, 1077
PleI	GAGTC	1 cut(s)	376
PpsI	GAGTC	1 cut(s)	376
PscI	ACATGT	1 cut(s)	410
PsiI	TTATAA	1 cut(s)	231
Psp6I	CCWGG	1 cut(s)	892
PspGI	CCWGG	1 cut(s)	892
PspN4I	GGNNCC	1 cut(s)	51
PstNI	CAGNNNCTG	1 cut(s)	295
PsuI	RGATCY	3 cut(s)	473, 643, 940
PteI	GCGCGC	1 cut(s)	860
PvuII	CAGCTG	1 cut(s)	295
RsaI	GTAC	1 cut(s)	793
RsaNI	GTAC	1 cut(s)	792
RseI	CAYNNNNRTG	2 cut(s)	531, 1017
SalI	GTCGAC	1 cut(s)	729
SaqAI	TTAA	5 cut(s)	8, 773, 846, 1164, 1352
SatI	GCNGC	3 cut(s)	293, 571, 1076
Sau3AI	GATC	9 cut(s)	157, 362, 473, 565, 643, 747, 810, 940, 1009
SchI	GAGTC	1 cut(s)	377
ScrFI	CCNGG	2 cut(s)	894, 1124
SduI	GDGCHC	3 cut(s)	787, 1129, 1148
SfaNI	GCATC	4 cut(s)	109, 580, 887, 1284
SfcI	CTRYAG	1 cut(s)	823
SfuI	TTCGAA	1 cut(s)	1334
SmiMI	CAYNNNNRTG	2 cut(s)	531, 1017
SmlI	CTYRAG	3 cut(s)	209, 845, 934
SmoI	CTYRAG	3 cut(s)	209, 845, 934
Sse9I	AATT	5 cut(s)	10, 73, 416, 828, 1159
SsiI	CCGC	3 cut(s)	850, 953, 1076
SspMI	CTAG	3 cut(s)	501, 1130, 1360
StyD4I	CCNGG	2 cut(s)	892, 1122
TaaI	ACNGT	5 cut(s)	287, 356, 688, 735, 1181
TaiI	ACGT	1 cut(s)	704
TaqI	TCGA	4 cut(s)	90, 730, 915, 1334
TasI	AATT	5 cut(s)	10, 73, 416, 828, 1159
TauI	GCSGC	1 cut(s)	1078
Tru1I	TTAA	5 cut(s)	8, 773, 846, 1164, 1352
Tru9I	TTAA	5 cut(s)	8, 773, 846, 1164, 1352
TscAI	CASTG	2 cut(s)	806, 1291
TseFI	GTSAC	1 cut(s)	1000
TseI	GCWGC	2 cut(s)	292, 570
Tsp45I	GTSAC	1 cut(s)	1000
TspDTI	ATGAA	3 cut(s)	481, 590, 1035
TspGWI	ACGGA	2 cut(s)	150, 767
TspRI	CASTG	2 cut(s)	806, 1291
Van91I	CCANNNNNTGG	1 cut(s)	611
Vha464I	CTTAAG	1 cut(s)	845
XapI	RAATTY	3 cut(s)	10, 416, 1159
XceI	RCATGY	1 cut(s)	414
XmiI	GTMKAC	1 cut(s)	730
XspI	CTAG	3 cut(s)	501, 1130, 1360

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.