Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0008423.1

Orthogroup ID

OG0011393

Physical Location & Seq

Genomic Coordinates Reverse (-)

2 .. 836

Gene Structure 835 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0008423.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 835 bp

atggccttgaatttttcccatcgaccattctttccggctcatctgtctgaggacaatttggtgtcaccgatgaggattcacaatgggtaccttgccgatggtatctcggagaggaatggagatggttttggtaggccgtggcactctaaccgggatgtggaggatccctttgattatgggagggatagatgtgataagggcagctcacaggagccagtttcgaatgacattattgatcttttgccttcggatccatttgggatggatataagtacaacttttacagccattacagggtggctcgaggatttggaaatggactatgggtgttatggaagggatgatgtggggactagcaatgggaattatgaactttttgcgggattgaattttatttggaataatgctatgaggttccagacattccctgggaatcttggggttgatcgcaagtctaaagtagcaagcgaattccgtgggtgttttaaagagaagcgggtgggtgacacatcctcccatggtggcttggttgggtgcttgaaagagaagcaggtgggtgatggtggcttggttgggtgtttgaaagaagagcaggtgggtgatgcatcctccctaggtggtttcattgggtgttctaaagagaagcaggttgttgatgcatcctcccatggtggtttggttgggtgctccaaagagaagcaggtcgttgattcatcttgccatggtggtttggttggggttgttgattcatcctcccatggtggtttggttgggtgttcaaaagagaagcaggttgttgtcgttgattcatcctgccatggtggtttggttggcg

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0008150 GO:0009787 GO:0009788 GO:0009966 GO:0009968 GO:0010646 GO:0010648 GO:0023051 GO:0023057 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0048519 GO:0048523 GO:0048583 GO:0048585 GO:0050789 GO:0050794 GO:0065007 GO:1901419 GO:1901420 GO:1905957 GO:1905958

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

F-box F-box-like

Protein Analysis

278

Amino Acids

29.74

Weight (kDa)

5.07

Isoelectric Point (pI)

35.35

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0011393)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G26000
fragaria_vesca	FvH4_4g24590
malus_domestica	MD13G1110000.v1.1 MD16G1109900.v1.1
prunus_persica	Prupe.1G234900_v2.0.a1
pyrus_communis	pycom13g09570 pycom16g09340
rosa_chinensis	RchiOBHm_Chr4g0431591
rosa_laevigata	RLG00000006905
rosa_multiflora	Rmu_sc0008423.1_g000001 Rmu_sc0035802.1_g000001 Rmu_sc0035803.1_g000001 Rmu_ssc0000203.1_g000001
rosa_roxburghii	Rroxscaffold_5G00373050
rosa_rugosa	Rorug04G0251100
rosa_samantha	Rh4AG307800 Rh4BG315400 Rh4CG330900 Rh4DG310300
rosa_wichuraiana	Rw4G026680

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	2 cut(s)	541, 583
Acc36I	ACCTGC	5 cut(s)	541, 583, 637, 691, 781
Acc65I	GGTACC	1 cut(s)	87
AccB1I	GGYRCC	1 cut(s)	87
AciI	CCGC	2 cut(s)	380, 496
AclWI	GGATC	4 cut(s)	158, 171, 245, 258
AcsI	RAATTY	3 cut(s)	10, 388, 470
AfaI	GTAC	2 cut(s)	89, 274
AfiI	CCNNNNNNNGG	2 cut(s)	157, 294
AgsI	TTSAA	5 cut(s)	10, 388, 541, 583, 780
AjnI	CCWGG	1 cut(s)	427
AluBI	AGCT	1 cut(s)	204
AluI	AGCT	1 cut(s)	204
Alw21I	GWGCWC	1 cut(s)	689
AlwI	GGATC	4 cut(s)	158, 171, 245, 258
Ama87I	CYCGRG	1 cut(s)	302
AoxI	GGCC	2 cut(s)	3, 134
ApeKI	GCWGC	1 cut(s)	201
ApoI	RAATTY	3 cut(s)	10, 388, 470
Asp718I	GGTACC	1 cut(s)	87
AspA2I	CCTAGG	1 cut(s)	613
AsuC2I	CCSGG	1 cut(s)	152
AsuHPI	GGTGA	4 cut(s)	57, 515, 569, 611
AsuII	TTCGAA	1 cut(s)	221
AvaI	CYCGRG	1 cut(s)	302
AvrII	CCTAGG	1 cut(s)	613
BamHI	GGATCC	2 cut(s)	163, 250
BanI	GGYRCC	1 cut(s)	87
Bbv12I	GWGCWC	1 cut(s)	689
BbvI	GCAGC	1 cut(s)	213
BccI	CCATC	5 cut(s)	27, 92, 116, 256, 554
BceAI	ACGGC	1 cut(s)	121
BciT130I	CCWGG	1 cut(s)	429
BcnI	CCSGG	1 cut(s)	152
BfaI	CTAG	2 cut(s)	354, 614
BfuAI	ACCTGC	5 cut(s)	541, 583, 637, 691, 781
BisI	GCNGC	1 cut(s)	202
BlnI	CCTAGG	1 cut(s)	613
BlsI	GCNGC	1 cut(s)	203
Bme1390I	CCNGG	2 cut(s)	152, 429
BmeT110I	CYCGRG	1 cut(s)	302
BmiI	GGNNCC	5 cut(s)	89, 165, 213, 252, 416
BmrFI	CCNGG	2 cut(s)	152, 429
BmsI	GCATC	4 cut(s)	592, 614, 646, 668
Bpu14I	TTCGAA	1 cut(s)	221
BpuMI	CCSGG	1 cut(s)	152
BsaXI	ACNNNNNCTCC	2 cut(s)	497, 527
Bsc4I	CCNNNNNNNGG	2 cut(s)	157, 294
Bse1I	ACTGG	1 cut(s)	215
Bse3DI	GCAATG	1 cut(s)	364
BseBI	CCWGG	1 cut(s)	429
BseGI	GGATG	8 cut(s)	160, 267, 346, 509, 605, 659, 749, 809
BseLI	CCNNNNNNNGG	2 cut(s)	157, 294
BseMI	GCAATG	1 cut(s)	364
BseMII	CTCAG	1 cut(s)	39
BseNI	ACTGG	1 cut(s)	215
BseXI	GCAGC	1 cut(s)	213
BshFI	GGCC	2 cut(s)	5, 136
BshNI	GGYRCC	1 cut(s)	87
BsiHKAI	GWGCWC	1 cut(s)	689
BsiHKCI	CYCGRG	1 cut(s)	302
BsiSI	CCGG	2 cut(s)	35, 151
BslFI	GGGAC	1 cut(s)	364
BslI	CCNNNNNNNGG	2 cut(s)	157, 294
BsmFI	GGGAC	1 cut(s)	364
BsnI	GGCC	2 cut(s)	5, 136
BsoBI	CYCGRG	1 cut(s)	302
Bsp119I	TTCGAA	1 cut(s)	221
Bsp1286I	GDGCHC	1 cut(s)	689
Bsp143I	GATC	4 cut(s)	163, 235, 250, 445
Bsp19I	CCATGG	5 cut(s)	517, 667, 721, 757, 817
BspACI	CCGC	2 cut(s)	380, 496
BspANI	GGCC	2 cut(s)	5, 136
BspCNI	CTCAG	1 cut(s)	40
BspLI	GGNNCC	5 cut(s)	89, 165, 213, 252, 416
BspMI	ACCTGC	5 cut(s)	541, 583, 637, 691, 781
BspPI	GGATC	4 cut(s)	158, 171, 245, 258
BspQI	GCTCTTC	1 cut(s)	582
BspT104I	TTCGAA	1 cut(s)	221
BspT107I	GGYRCC	1 cut(s)	87
BsrDI	GCAATG	1 cut(s)	364
BsrI	ACTGG	1 cut(s)	215
BssMI	GATC	4 cut(s)	163, 235, 250, 445
BssT1I	CCWWGG	6 cut(s)	517, 613, 667, 721, 757, 817
Bst2UI	CCWGG	1 cut(s)	429
Bst6I	CTCTTC	1 cut(s)	582
BstBI	TTCGAA	1 cut(s)	221
BstC8I	GCNNGC	1 cut(s)	466
BstDEI	CTNAG	1 cut(s)	48
BstDSI	CCRYGG	7 cut(s)	137, 475, 517, 667, 721, 757, 817
BstF5I	GGATG	8 cut(s)	160, 267, 346, 509, 605, 659, 749, 809
BstKTI	GATC	4 cut(s)	166, 238, 253, 448
BstMBI	GATC	4 cut(s)	163, 235, 250, 445
BstNI	CCWGG	1 cut(s)	429
BstSCI	CCNGG	2 cut(s)	150, 427
BstV1I	GCAGC	1 cut(s)	213
BstX2I	RGATCY	2 cut(s)	163, 250
BstYI	RGATCY	2 cut(s)	163, 250
BsuRI	GGCC	2 cut(s)	5, 136
BtgI	CCRYGG	7 cut(s)	137, 475, 517, 667, 721, 757, 817
BtsCI	GGATG	8 cut(s)	160, 267, 346, 509, 605, 659, 749, 809
BveI	ACCTGC	5 cut(s)	541, 583, 637, 691, 781
Cac8I	GCNNGC	1 cut(s)	466
Csp6I	GTAC	2 cut(s)	88, 273
CviAII	CATG	5 cut(s)	518, 668, 722, 758, 818
CviJI	RGCY	9 cut(s)	5, 38, 136, 204, 214, 287, 301, 525, 567
CviKI_1	RGCY	9 cut(s)	5, 38, 136, 204, 214, 287, 301, 525, 567
CviQI	GTAC	2 cut(s)	88, 273
DdeI	CTNAG	1 cut(s)	48
DpnI	GATC	4 cut(s)	165, 237, 252, 447
DpnII	GATC	4 cut(s)	163, 235, 250, 445
DraI	TTTAAA	1 cut(s)	487
Eam1104I	CTCTTC	1 cut(s)	582
EarI	CTCTTC	1 cut(s)	582
Eco130I	CCWWGG	6 cut(s)	517, 613, 667, 721, 757, 817
Eco88I	CYCGRG	1 cut(s)	302
EcoRI	GAATTC	1 cut(s)	470
EcoRII	CCWGG	1 cut(s)	427
EcoT14I	CCWWGG	6 cut(s)	517, 613, 667, 721, 757, 817
EcoT22I	ATGCAT	2 cut(s)	607, 661
ErhI	CCWWGG	6 cut(s)	517, 613, 667, 721, 757, 817
FaeI	CATG	5 cut(s)	521, 671, 725, 761, 821
FalI	AAGNNNNNCTT	2 cut(s)	262, 294
FaqI	GGGAC	1 cut(s)	364
FatI	CATG	5 cut(s)	517, 667, 721, 757, 817
FauI	CCCGC	2 cut(s)	373, 489
Fnu4HI	GCNGC	1 cut(s)	202
FokI	GGATG	8 cut(s)	167, 274, 353, 496, 592, 646, 736, 796
Fsp4HI	GCNGC	1 cut(s)	202
FspBI	CTAG	2 cut(s)	354, 614
GluI	GCNGC	1 cut(s)	202
HaeIII	GGCC	2 cut(s)	5, 136
HapII	CCGG	2 cut(s)	35, 151
Hin1II	CATG	5 cut(s)	521, 671, 725, 761, 821
HinfI	GANTC	5 cut(s)	76, 433, 710, 746, 806
HpaII	CCGG	2 cut(s)	35, 151
HphI	GGTGA	4 cut(s)	57, 515, 569, 611
Hpy188I	TCNGA	3 cut(s)	49, 109, 250
Hpy188III	TCNNGA	1 cut(s)	418
HpyAV	CCTTC	2 cut(s)	255, 330
HpyCH4V	TGCA	2 cut(s)	605, 659
HpyF3I	CTNAG	1 cut(s)	48
Hsp92II	CATG	5 cut(s)	521, 671, 725, 761, 821
KpnI	GGTACC	1 cut(s)	91
Kzo9I	GATC	4 cut(s)	163, 235, 250, 445
LguI	GCTCTTC	1 cut(s)	582
LmnI	GCTCC	2 cut(s)	211, 692
Lsp1109I	GCAGC	1 cut(s)	213
LweI	GCATC	4 cut(s)	592, 614, 646, 668
MaeI	CTAG	2 cut(s)	354, 614
MaeIII	GTNAC	2 cut(s)	63, 503
MalI	GATC	4 cut(s)	165, 237, 252, 447
MboI	GATC	4 cut(s)	163, 235, 250, 445
MboII	GAAGA	1 cut(s)	599
MflI	RGATCY	2 cut(s)	163, 250
MhlI	GDGCHC	1 cut(s)	689
MluCI	AATT	5 cut(s)	10, 55, 364, 388, 470
Mph1103I	ATGCAT	2 cut(s)	607, 661
MseI	TTAA	1 cut(s)	486
MspI	CCGG	2 cut(s)	35, 151
MspR9I	CCNGG	2 cut(s)	152, 429
MvaI	CCWGG	1 cut(s)	429
NciI	CCSGG	1 cut(s)	152
NcoI	CCATGG	5 cut(s)	517, 667, 721, 757, 817
NdeII	GATC	4 cut(s)	163, 235, 250, 445
NlaIII	CATG	5 cut(s)	521, 671, 725, 761, 821
NlaIV	GGNNCC	5 cut(s)	89, 165, 213, 252, 416
NmuCI	GTSAC	2 cut(s)	63, 503
NsiI	ATGCAT	2 cut(s)	607, 661
NspV	TTCGAA	1 cut(s)	221
PaeR7I	CTCGAG	1 cut(s)	302
PaqCI	CACCTGC	2 cut(s)	541, 583
PasI	CCCWGGG	1 cut(s)	428
PciSI	GCTCTTC	1 cut(s)	582
PfeI	GAWTC	5 cut(s)	76, 433, 710, 746, 806
PkrI	GCNGC	1 cut(s)	203
Psp6I	CCWGG	1 cut(s)	427
PspGI	CCWGG	1 cut(s)	427
PspN4I	GGNNCC	5 cut(s)	89, 165, 213, 252, 416
PspXI	VCTCGAGB	1 cut(s)	302
PsuI	RGATCY	2 cut(s)	163, 250
RsaI	GTAC	2 cut(s)	89, 274
RsaNI	GTAC	2 cut(s)	88, 273
SapI	GCTCTTC	1 cut(s)	582
SaqAI	TTAA	1 cut(s)	486
SatI	GCNGC	1 cut(s)	202
Sau3AI	GATC	4 cut(s)	163, 235, 250, 445
ScrFI	CCNGG	2 cut(s)	152, 429
SduI	GDGCHC	1 cut(s)	689
SetI	ASST	9 cut(s)	93, 206, 416, 555, 597, 619, 651, 705, 795
SfaNI	GCATC	4 cut(s)	592, 614, 646, 668
Sfr274I	CTCGAG	1 cut(s)	302
SfuI	TTCGAA	1 cut(s)	221
SlaI	CTCGAG	1 cut(s)	302
SmlI	CTYRAG	1 cut(s)	302
SmoI	CTYRAG	1 cut(s)	302
Sse9I	AATT	5 cut(s)	10, 55, 364, 388, 470
SsiI	CCGC	2 cut(s)	380, 496
SspMI	CTAG	2 cut(s)	354, 614
StyD4I	CCNGG	2 cut(s)	150, 427
StyI	CCWWGG	6 cut(s)	517, 613, 667, 721, 757, 817
TaqI	TCGA	3 cut(s)	22, 221, 303
TasI	AATT	5 cut(s)	10, 55, 364, 388, 470
TatI	WGTACW	1 cut(s)	272
TfiI	GAWTC	5 cut(s)	76, 433, 710, 746, 806
Tru1I	TTAA	1 cut(s)	486
Tru9I	TTAA	1 cut(s)	486
TseFI	GTSAC	2 cut(s)	63, 503
TseI	GCWGC	1 cut(s)	201
Tsp45I	GTSAC	2 cut(s)	63, 503
TspDTI	ATGAA	5 cut(s)	384, 613, 702, 738, 798
TspGWI	ACGGA	1 cut(s)	464
XapI	RAATTY	3 cut(s)	10, 388, 470
XcmI	CCANNNNNNNNNTGG	1 cut(s)	425
XhoI	CTCGAG	1 cut(s)	302
XmaJI	CCTAGG	1 cut(s)	613
XspI	CTAG	2 cut(s)	354, 614
Zsp2I	ATGCAT	2 cut(s)	607, 661

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.