Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0035803.1

Orthogroup ID

OG0011393

Physical Location & Seq

Genomic Coordinates Forward (+)

38 .. 334

Gene Structure 297 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0035803.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 297 bp

atgtgccctagatgccagaacttgaggcttgtttatgattgccccgcagaggcttgtcaaggaaaagaacatactactcagttatgcagggcctgcacactatgcataggtaggtgtgctcagtgcggtcggtgcattaatgatagtgaatatgaggaaacattctgtctggagttgctttgctcagattgttggaagcagctactcaagtctcaggagggggaggatacagagtttgttccatccaactctgctgttctccatgaacagaatcatagcttttgtcgccacggctag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0008150 GO:0009787 GO:0009788 GO:0009966 GO:0009968 GO:0010646 GO:0010648 GO:0023051 GO:0023057 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0048519 GO:0048523 GO:0048583 GO:0048585 GO:0050789 GO:0050794 GO:0065007 GO:1901419 GO:1901420 GO:1905957 GO:1905958

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

F-box F-box-like

Protein Analysis

98

Amino Acids

11.14

Weight (kDa)

5.24

Isoelectric Point (pI)

51.48

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0011393)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G26000
fragaria_vesca	FvH4_4g24590
malus_domestica	MD13G1110000.v1.1 MD16G1109900.v1.1
prunus_persica	Prupe.1G234900_v2.0.a1
pyrus_communis	pycom13g09570 pycom16g09340
rosa_chinensis	RchiOBHm_Chr4g0431591
rosa_laevigata	RLG00000006905
rosa_multiflora	Rmu_sc0008423.1_g000001 Rmu_sc0035802.1_g000001 Rmu_sc0035803.1_g000001 Rmu_ssc0000203.1_g000001
rosa_roxburghii	Rroxscaffold_5G00373050
rosa_rugosa	Rorug04G0251100
rosa_samantha	Rh4AG307800 Rh4BG315400 Rh4CG330900 Rh4DG310300
rosa_wichuraiana	Rw4G026680

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	45, 126
AfiI	CCNNNNNNNGG	1 cut(s)	49
AluBI	AGCT	2 cut(s)	202, 279
AluI	AGCT	2 cut(s)	202, 279
Alw21I	GWGCWC	1 cut(s)	121
Alw26I	GTCTC	1 cut(s)	216
AlwNI	CAGNNNCTG	1 cut(s)	93
AoxI	GGCC	1 cut(s)	90
ApeKI	GCWGC	1 cut(s)	199
AseI	ATTAAT	1 cut(s)	138
AspS9I	GGNCC	1 cut(s)	90
BaeGI	GKGCMC	1 cut(s)	8
Bbv12I	GWGCWC	1 cut(s)	121
BbvI	GCAGC	1 cut(s)	211
BccI	CCATC	1 cut(s)	250
BciVI	GTATCC	1 cut(s)	220
BcoDI	GTCTC	1 cut(s)	216
BfaI	CTAG	2 cut(s)	9, 295
BfuI	GTATCC	1 cut(s)	220
BisI	GCNGC	1 cut(s)	200
BlsI	GCNGC	1 cut(s)	201
BmgT120I	GGNCC	1 cut(s)	90
BmsI	GCATC	1 cut(s)	2
BpmI	CTGGAG	1 cut(s)	191
BpuEI	CTTGAG	2 cut(s)	43, 191
BsaJI	CCNNGG	1 cut(s)	289
Bsc4I	CCNNNNNNNGG	1 cut(s)	49
BseDI	CCNNGG	1 cut(s)	289
BseGI	GGATG	1 cut(s)	242
BseLI	CCNNNNNNNGG	1 cut(s)	49
BseMII	CTCAG	4 cut(s)	92, 134, 198, 227
BseSI	GKGCMC	1 cut(s)	8
BseXI	GCAGC	1 cut(s)	211
BsgI	GTGCAG	1 cut(s)	79
Bsh1285I	CGRYCG	1 cut(s)	130
BshFI	GGCC	1 cut(s)	92
BsiEI	CGRYCG	1 cut(s)	130
BsiHKAI	GWGCWC	1 cut(s)	121
BslI	CCNNNNNNNGG	1 cut(s)	49
BsmAI	GTCTC	1 cut(s)	216
BsnI	GGCC	1 cut(s)	92
Bsp1286I	GDGCHC	2 cut(s)	8, 121
BspACI	CCGC	2 cut(s)	45, 126
BspANI	GGCC	1 cut(s)	92
BspCNI	CTCAG	4 cut(s)	91, 133, 197, 226
BssECI	CCNNGG	1 cut(s)	289
BstAPI	GCANNNNNTGC	2 cut(s)	93, 102
BstC8I	GCNNGC	1 cut(s)	94
BstDEI	CTNAG	4 cut(s)	78, 120, 184, 213
BstDSI	CCRYGG	1 cut(s)	289
BstF5I	GGATG	1 cut(s)	242
BstMAI	GTCTC	1 cut(s)	216
BstMCI	CGRYCG	1 cut(s)	130
BstMWI	GCNNNNNNNGC	5 cut(s)	12, 93, 102, 132, 285
BstSLI	GKGCMC	1 cut(s)	8
BstV1I	GCAGC	1 cut(s)	211
BsuI	GTATCC	1 cut(s)	220
BsuRI	GGCC	1 cut(s)	92
BtgI	CCRYGG	1 cut(s)	289
BtsCI	GGATG	1 cut(s)	242
BtsIMutI	CAGTG	1 cut(s)	128
Cac8I	GCNNGC	1 cut(s)	94
CaiI	CAGNNNCTG	1 cut(s)	93
Cfr13I	GGNCC	1 cut(s)	90
CviAII	CATG	1 cut(s)	263
CviJI	RGCY	6 cut(s)	28, 53, 92, 202, 279, 294
CviKI_1	RGCY	6 cut(s)	28, 53, 92, 202, 279, 294
DdeI	CTNAG	4 cut(s)	78, 120, 184, 213
EcoO109I	RGGNCCY	1 cut(s)	90
EcoT22I	ATGCAT	1 cut(s)	107
FaeI	CATG	1 cut(s)	266
FaiI	YATR	8 cut(s)	36, 72, 85, 103, 107, 153, 264, 276
FatI	CATG	1 cut(s)	262
FauI	CCCGC	1 cut(s)	52
Fnu4HI	GCNGC	1 cut(s)	200
FokI	GGATG	1 cut(s)	229
Fsp4HI	GCNGC	1 cut(s)	200
FspBI	CTAG	2 cut(s)	9, 295
GluI	GCNGC	1 cut(s)	200
GsuI	CTGGAG	1 cut(s)	191
HaeIII	GGCC	1 cut(s)	92
Hin1II	CATG	1 cut(s)	266
HinfI	GANTC	1 cut(s)	271
Hpy188I	TCNGA	1 cut(s)	187
Hpy188III	TCNNGA	2 cut(s)	170, 215
HpyCH4V	TGCA	4 cut(s)	87, 96, 105, 135
HpyF10VI	GCNNNNNNNGC	5 cut(s)	12, 93, 102, 132, 285
HpyF3I	CTNAG	4 cut(s)	78, 120, 184, 213
Hsp92II	CATG	1 cut(s)	266
LpnPI	CCDG	5 cut(s)	29, 73, 106, 155, 200
Lsp1109I	GCAGC	1 cut(s)	211
LweI	GCATC	1 cut(s)	2
MaeI	CTAG	2 cut(s)	9, 295
MhlI	GDGCHC	2 cut(s)	8, 121
MmeI	TCCRAC	2 cut(s)	173, 270
MnlI	CCTC	5 cut(s)	18, 43, 148, 211, 217
Mph1103I	ATGCAT	1 cut(s)	107
MseI	TTAA	1 cut(s)	138
MwoI	GCNNNNNNNGC	5 cut(s)	12, 93, 102, 132, 285
NlaIII	CATG	1 cut(s)	266
NsiI	ATGCAT	1 cut(s)	107
PfeI	GAWTC	1 cut(s)	271
PkrI	GCNGC	1 cut(s)	201
PshBI	ATTAAT	1 cut(s)	138
PspPI	GGNCC	1 cut(s)	90
PstNI	CAGNNNCTG	1 cut(s)	93
SaqAI	TTAA	1 cut(s)	138
SatI	GCNGC	1 cut(s)	200
Sau96I	GGNCC	1 cut(s)	90
SduI	GDGCHC	2 cut(s)	8, 121
SetI	ASST	4 cut(s)	112, 116, 204, 281
SfaNI	GCATC	1 cut(s)	2
SmlI	CTYRAG	2 cut(s)	22, 206
SmoI	CTYRAG	2 cut(s)	22, 206
SsiI	CCGC	2 cut(s)	45, 126
SspMI	CTAG	2 cut(s)	9, 295
TfiI	GAWTC	1 cut(s)	271
Tru1I	TTAA	1 cut(s)	138
Tru9I	TTAA	1 cut(s)	138
TscAI	CASTG	1 cut(s)	128
TseI	GCWGC	1 cut(s)	199
TspDTI	ATGAA	1 cut(s)	279
TspRI	CASTG	1 cut(s)	128
VspI	ATTAAT	1 cut(s)	138
XspI	CTAG	2 cut(s)	9, 295
Zsp2I	ATGCAT	1 cut(s)	107

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.