Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_ssc0000203.1

Orthogroup ID

OG0011393

Physical Location & Seq

Genomic Coordinates Reverse (-)

2 .. 1813

Gene Structure 1812 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_ssc0000203.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 938 bp

ccatggtggtttggttgggtgttcaaaagagaagcaggttgttgtcgttgattcatcctgccatggtggtttggttggcgttgttgattcatcctccaatggtggtttggttgggtgttcaaaagagaagcaggttgttgatccaccctgccatggtggacttggtgggtgtttgaaagagaaggggattggtgatgcatctgatgcatcatccttccaaggtgatttcgaatcagcttgtgcagtggctgacattttgtcttttcacaatgaaacttgtggtttttccaatcagcaaaatgtagagcctcagcatgtcaatgggatttgctctgttggagatggaggagctcatgatggagctttgatgttggcccttagttatctgggtgtgcgggatctccttgttgtggaaagggtttgcagatctctctattctacagttcgtggcgacccccttatgtggagaagtattcacatagatcagccactgaatgagaaaattacagatgaagttcttttgcaattgactgatagggctcaaggaaatttacaatgcttgagcctggtggagtgccctaggatcactgacgatggtctcaagcgtgtacttgaaaataatcctaggcttaccaagttaagtgtgcctggatgtactagactcagtatcgagggcattgtgaatagcttaaaggcttttaagtctaagggtgcacatggtgtgaagcatttacgaattggcggactctatggtgtgacacagaagcattttgaagagttgaaatctttgttgggcactgatagcgagatgcagcagaatgcccgcaagccgcacttttatcaccgagggaacttttatttgtcctgtgatgatgatagtgacattgatatcgaaatgtgccctagatgccagaacttgaggcttgtttatgattgcc

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0008150 GO:0009787 GO:0009788 GO:0009966 GO:0009968 GO:0010646 GO:0010648 GO:0023051 GO:0023057 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0048519 GO:0048523 GO:0048583 GO:0048585 GO:0050789 GO:0050794 GO:0065007 GO:1901419 GO:1901420 GO:1905957 GO:1905958

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

F-box F-box-like

Protein Analysis

312

Amino Acids

33.74

Weight (kDa)

5.83

Isoelectric Point (pI)

36.28

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0011393)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G26000
fragaria_vesca	FvH4_4g24590
malus_domestica	MD13G1110000.v1.1 MD16G1109900.v1.1
prunus_persica	Prupe.1G234900_v2.0.a1
pyrus_communis	pycom13g09570 pycom16g09340
rosa_chinensis	RchiOBHm_Chr4g0431591
rosa_laevigata	RLG00000006905
rosa_multiflora	Rmu_sc0008423.1_g000001 Rmu_sc0035802.1_g000001 Rmu_sc0035803.1_g000001 Rmu_ssc0000203.1_g000001
rosa_roxburghii	Rroxscaffold_5G00373050
rosa_rugosa	Rorug04G0251100
rosa_samantha	Rh4AG307800 Rh4BG315400 Rh4CG330900 Rh4DG310300
rosa_wichuraiana	Rw4G026680

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	2 cut(s)	26, 122
AciI	CCGC	4 cut(s)	395, 742, 824, 831
AclWI	GGATC	3 cut(s)	135, 406, 591
AcsI	RAATTY	1 cut(s)	548
AdeI	CACNNNGTG	1 cut(s)	720
AfaI	GTAC	2 cut(s)	610, 656
AfiI	CCNNNNNNNGG	3 cut(s)	153, 410, 463
AgsI	TTSAA	6 cut(s)	25, 121, 176, 615, 774, 782
AhdI	GACNNNNNGTC	1 cut(s)	257
AjnI	CCWGG	2 cut(s)	565, 647
AjuI	GAANNNNNNNTTGG	2 cut(s)	774, 806
AluBI	AGCT	4 cut(s)	237, 351, 363, 688
AluI	AGCT	4 cut(s)	237, 351, 363, 688
Alw21I	GWGCWC	2 cut(s)	353, 716
Alw26I	GTCTC	1 cut(s)	603
Alw44I	GTGCAC	1 cut(s)	712
AlwI	GGATC	3 cut(s)	135, 406, 591
AlwNI	CAGNNNCTG	2 cut(s)	249, 491
AoxI	GGCC	1 cut(s)	373
ApaLI	GTGCAC	1 cut(s)	712
ApeKI	GCWGC	1 cut(s)	812
ApoI	RAATTY	1 cut(s)	548
AspA2I	CCTAGG	2 cut(s)	579, 624
AspS9I	GGNCC	1 cut(s)	374
AsuHPI	GGTGA	3 cut(s)	204, 234, 834
AsuII	TTCGAA	1 cut(s)	229
AvrII	CCTAGG	2 cut(s)	579, 624
BaeGI	GKGCMC	4 cut(s)	579, 716, 798, 903
BanII	GRGCYC	2 cut(s)	353, 542
Bbv12I	GWGCWC	2 cut(s)	353, 716
BbvCI	CCTCAGC	1 cut(s)	310
BbvI	GCAGC	1 cut(s)	824
BccI	CCATC	3 cut(s)	336, 351, 588
BciT130I	CCWGG	2 cut(s)	567, 649
BcoDI	GTCTC	1 cut(s)	603
BfaI	CTAG	4 cut(s)	580, 625, 658, 904
BfmI	CTRYAG	1 cut(s)	439
BfuAI	ACCTGC	2 cut(s)	26, 122
BglII	AGATCT	1 cut(s)	426
BisI	GCNGC	2 cut(s)	813, 831
BlnI	CCTAGG	2 cut(s)	579, 624
BlsI	GCNGC	2 cut(s)	814, 832
Bme1390I	CCNGG	2 cut(s)	567, 649
BmeRI	GACNNNNNGTC	1 cut(s)	257
BmgT120I	GGNCC	1 cut(s)	374
BmrFI	CCNGG	2 cut(s)	567, 649
BmsI	GCATC	6 cut(s)	185, 194, 207, 216, 799, 897
BoxI	GACNNNNGTC	1 cut(s)	595
Bpu10I	CCTNAGC	1 cut(s)	310
Bpu14I	TTCGAA	1 cut(s)	229
BpuEI	CTTGAG	4 cut(s)	526, 581, 585, 938
BsaI	GGTCTC	1 cut(s)	603
BsaJI	CCNNGG	7 cut(s)	2, 62, 152, 218, 579, 624, 845
Bsc4I	CCNNNNNNNGG	3 cut(s)	153, 410, 463
BseBI	CCWGG	2 cut(s)	567, 649
BseDI	CCNNGG	7 cut(s)	2, 62, 152, 218, 579, 624, 845
BseGI	GGATG	4 cut(s)	54, 90, 210, 657
BseLI	CCNNNNNNNGG	3 cut(s)	153, 410, 463
BseMII	CTCAG	2 cut(s)	324, 677
BseRI	GAGGAG	1 cut(s)	361
BseSI	GKGCMC	4 cut(s)	579, 716, 798, 903
BseXI	GCAGC	1 cut(s)	824
BsgI	GTGCAG	1 cut(s)	262
BshFI	GGCC	1 cut(s)	375
BsiHKAI	GWGCWC	2 cut(s)	353, 716
BslI	CCNNNNNNNGG	3 cut(s)	153, 410, 463
BsmAI	GTCTC	1 cut(s)	603
BsmI	GAATGC	1 cut(s)	824
BsnI	GGCC	1 cut(s)	375
Bso31I	GGTCTC	1 cut(s)	603
Bsp119I	TTCGAA	1 cut(s)	229
Bsp1286I	GDGCHC	6 cut(s)	353, 542, 579, 716, 798, 903
Bsp143I	GATC	5 cut(s)	140, 398, 426, 482, 583
Bsp19I	CCATGG	3 cut(s)	2, 62, 152
BspACI	CCGC	4 cut(s)	395, 742, 824, 831
BspANI	GGCC	1 cut(s)	375
BspCNI	CTCAG	2 cut(s)	323, 676
BspHI	TCATGA	1 cut(s)	353
BspMI	ACCTGC	2 cut(s)	26, 122
BspPI	GGATC	3 cut(s)	135, 406, 591
BspT104I	TTCGAA	1 cut(s)	229
BspTNI	GGTCTC	1 cut(s)	603
BssECI	CCNNGG	7 cut(s)	2, 62, 152, 218, 579, 624, 845
BssMI	GATC	5 cut(s)	140, 398, 426, 482, 583
BssT1I	CCWWGG	6 cut(s)	2, 62, 152, 218, 579, 624
Bst2UI	CCWGG	2 cut(s)	567, 649
Bst4CI	ACNGT	1 cut(s)	443
Bst6I	CTCTTC	1 cut(s)	769
BstAPI	GCANNNNNTGC	1 cut(s)	204
BstBI	TTCGAA	1 cut(s)	229
BstC8I	GCNNGC	2 cut(s)	824, 828
BstDEI	CTNAG	4 cut(s)	310, 378, 663, 706
BstDSI	CCRYGG	3 cut(s)	2, 62, 152
BstF5I	GGATG	4 cut(s)	54, 90, 210, 657
BstKTI	GATC	5 cut(s)	143, 401, 429, 485, 586
BstMAI	GTCTC	1 cut(s)	603
BstMBI	GATC	5 cut(s)	140, 398, 426, 482, 583
BstMWI	GCNNNNNNNGC	3 cut(s)	204, 802, 907
BstNI	CCWGG	2 cut(s)	567, 649
BstNSI	RCATGY	1 cut(s)	318
BstPAI	GACNNNNGTC	1 cut(s)	595
BstSCI	CCNGG	2 cut(s)	565, 647
BstSFI	CTRYAG	1 cut(s)	439
BstSLI	GKGCMC	4 cut(s)	579, 716, 798, 903
BstV1I	GCAGC	1 cut(s)	824
BstX2I	RGATCY	2 cut(s)	398, 426
BstYI	RGATCY	2 cut(s)	398, 426
BsuRI	GGCC	1 cut(s)	375
BtgI	CCRYGG	3 cut(s)	2, 62, 152
BtsCI	GGATG	4 cut(s)	54, 90, 210, 657
BtsI	GCAGTG	1 cut(s)	250
BtsIMutI	CAGTG	4 cut(s)	250, 489, 586, 796
BveI	ACCTGC	2 cut(s)	26, 122
Cac8I	GCNNGC	2 cut(s)	824, 828
CaiI	CAGNNNCTG	2 cut(s)	249, 491
CciI	TCATGA	1 cut(s)	353
Cfr13I	GGNCC	1 cut(s)	374
Csp6I	GTAC	2 cut(s)	609, 655
CviAII	CATG	6 cut(s)	3, 63, 153, 315, 354, 717
CviQI	GTAC	2 cut(s)	609, 655
DdeI	CTNAG	4 cut(s)	310, 378, 663, 706
DpnI	GATC	5 cut(s)	142, 400, 428, 484, 585
DpnII	GATC	5 cut(s)	140, 398, 426, 482, 583
DraIII	CACNNNGTG	1 cut(s)	720
DriI	GACNNNNNGTC	1 cut(s)	257
Eam1104I	CTCTTC	1 cut(s)	769
Eam1105I	GACNNNNNGTC	1 cut(s)	257
EarI	CTCTTC	1 cut(s)	769
EciI	GGCGGA	1 cut(s)	757
Ecl136II	GAGCTC	1 cut(s)	351
Eco130I	CCWWGG	6 cut(s)	2, 62, 152, 218, 579, 624
Eco24I	GRGCYC	2 cut(s)	353, 542
Eco31I	GGTCTC	1 cut(s)	603
Eco32I	GATATC	1 cut(s)	890
Eco53kI	GAGCTC	1 cut(s)	351
EcoICRI	GAGCTC	1 cut(s)	351
EcoRII	CCWGG	2 cut(s)	565, 647
EcoRV	GATATC	1 cut(s)	890
EcoT14I	CCWWGG	6 cut(s)	2, 62, 152, 218, 579, 624
EcoT22I	ATGCAT	2 cut(s)	200, 209
EcoT38I	GRGCYC	2 cut(s)	353, 542
ErhI	CCWWGG	6 cut(s)	2, 62, 152, 218, 579, 624
FaeI	CATG	6 cut(s)	6, 66, 156, 318, 357, 720
FalI	AAGNNNNNCTT	2 cut(s)	819, 851
FatI	CATG	6 cut(s)	2, 62, 152, 314, 353, 716
FauI	CCCGC	2 cut(s)	388, 831
Fnu4HI	GCNGC	2 cut(s)	813, 831
FokI	GGATG	4 cut(s)	41, 77, 197, 664
FriOI	GRGCYC	2 cut(s)	353, 542
Fsp4HI	GCNGC	2 cut(s)	813, 831
FspBI	CTAG	4 cut(s)	580, 625, 658, 904
GluI	GCNGC	2 cut(s)	813, 831
HaeIII	GGCC	1 cut(s)	375
Hin1II	CATG	6 cut(s)	6, 66, 156, 318, 357, 720
HinfI	GANTC	5 cut(s)	51, 87, 231, 661, 745
HphI	GGTGA	3 cut(s)	204, 234, 834
Hpy166II	GTNNAC	3 cut(s)	159, 609, 714
Hpy188I	TCNGA	1 cut(s)	203
Hpy188III	TCNNGA	1 cut(s)	354
Hpy8I	GTNNAC	3 cut(s)	159, 609, 714
HpyAV	CCTTC	2 cut(s)	176, 224
HpyCH4III	ACNGT	1 cut(s)	443
HpyCH4V	TGCA	7 cut(s)	198, 207, 243, 424, 524, 714, 812
HpyF10VI	GCNNNNNNNGC	3 cut(s)	204, 802, 907
HpyF3I	CTNAG	4 cut(s)	310, 378, 663, 706
Hsp92II	CATG	6 cut(s)	6, 66, 156, 318, 357, 720
Kzo9I	GATC	5 cut(s)	140, 398, 426, 482, 583
LmnI	GCTCC	2 cut(s)	348, 360
Lsp1109I	GCAGC	1 cut(s)	824
LweI	GCATC	6 cut(s)	185, 194, 207, 216, 799, 897
MaeI	CTAG	4 cut(s)	580, 625, 658, 904
MaeIII	GTNAC	2 cut(s)	755, 879
MalI	GATC	5 cut(s)	142, 400, 428, 484, 585
MboI	GATC	5 cut(s)	140, 398, 426, 482, 583
MboII	GAAGA	1 cut(s)	786
MfeI	CAATTG	1 cut(s)	525
MflI	RGATCY	2 cut(s)	398, 426
MhlI	GDGCHC	6 cut(s)	353, 542, 579, 716, 798, 903
MluCI	AATT	4 cut(s)	502, 525, 548, 736
MlyI	GAGTC	2 cut(s)	655, 739
MmeI	TCCRAC	1 cut(s)	317
MnlI	CCTC	6 cut(s)	104, 319, 339, 665, 840, 913
Mph1103I	ATGCAT	2 cut(s)	200, 209
MseI	TTAA	3 cut(s)	639, 690, 700
MslI	CAYNNNNRTG	1 cut(s)	319
MspR9I	CCNGG	2 cut(s)	567, 649
MunI	CAATTG	1 cut(s)	525
Mva1269I	GAATGC	1 cut(s)	824
MvaI	CCWGG	2 cut(s)	567, 649
MwoI	GCNNNNNNNGC	3 cut(s)	204, 802, 907
NcoI	CCATGG	3 cut(s)	2, 62, 152
NdeII	GATC	5 cut(s)	140, 398, 426, 482, 583
NlaIII	CATG	6 cut(s)	6, 66, 156, 318, 357, 720
NmuCI	GTSAC	2 cut(s)	755, 879
NsiI	ATGCAT	2 cut(s)	200, 209
NspI	RCATGY	1 cut(s)	318
NspV	TTCGAA	1 cut(s)	229
PagI	TCATGA	1 cut(s)	353
PctI	GAATGC	1 cut(s)	824
PfeI	GAWTC	3 cut(s)	51, 87, 231
PkrI	GCNGC	2 cut(s)	814, 832
PleI	GAGTC	2 cut(s)	655, 739
PpsI	GAGTC	2 cut(s)	655, 739
PshAI	GACNNNNGTC	1 cut(s)	595
Psp124BI	GAGCTC	1 cut(s)	353
Psp6I	CCWGG	2 cut(s)	565, 647
PspGI	CCWGG	2 cut(s)	565, 647
PspPI	GGNCC	1 cut(s)	374
PstNI	CAGNNNCTG	2 cut(s)	249, 491
PsuI	RGATCY	2 cut(s)	398, 426
RsaI	GTAC	2 cut(s)	610, 656
RsaNI	GTAC	2 cut(s)	609, 655
RseI	CAYNNNNRTG	1 cut(s)	319
SacI	GAGCTC	1 cut(s)	353
SaqAI	TTAA	3 cut(s)	639, 690, 700
SatI	GCNGC	2 cut(s)	813, 831
Sau3AI	GATC	5 cut(s)	140, 398, 426, 482, 583
Sau96I	GGNCC	1 cut(s)	374
SchI	GAGTC	2 cut(s)	655, 739
ScrFI	CCNGG	2 cut(s)	567, 649
SduI	GDGCHC	6 cut(s)	353, 542, 579, 716, 798, 903
SetI	ASST	7 cut(s)	40, 136, 224, 239, 353, 365, 690
SfaNI	GCATC	6 cut(s)	185, 194, 207, 216, 799, 897
SfcI	CTRYAG	1 cut(s)	439
SfuI	TTCGAA	1 cut(s)	229
SmiMI	CAYNNNNRTG	1 cut(s)	319
SmlI	CTYRAG	4 cut(s)	541, 560, 600, 917
SmoI	CTYRAG	4 cut(s)	541, 560, 600, 917
Sse9I	AATT	4 cut(s)	502, 525, 548, 736
SsiI	CCGC	4 cut(s)	395, 742, 824, 831
SspMI	CTAG	4 cut(s)	580, 625, 658, 904
SstI	GAGCTC	1 cut(s)	353
StyD4I	CCNGG	2 cut(s)	565, 647
StyI	CCWWGG	6 cut(s)	2, 62, 152, 218, 579, 624
TaaI	ACNGT	1 cut(s)	443
TaqI	TCGA	3 cut(s)	229, 670, 892
TasI	AATT	4 cut(s)	502, 525, 548, 736
TatI	WGTACW	2 cut(s)	608, 654
TauI	GCSGC	1 cut(s)	833
TfiI	GAWTC	3 cut(s)	51, 87, 231
Tru1I	TTAA	3 cut(s)	639, 690, 700
Tru9I	TTAA	3 cut(s)	639, 690, 700
TscAI	CASTG	4 cut(s)	250, 496, 593, 803
TseFI	GTSAC	2 cut(s)	755, 879
TseI	GCWGC	1 cut(s)	812
Tsp45I	GTSAC	2 cut(s)	755, 879
TspDTI	ATGAA	4 cut(s)	43, 79, 286, 526
TspRI	CASTG	4 cut(s)	250, 496, 593, 803
VneI	GTGCAC	1 cut(s)	712
XapI	RAATTY	1 cut(s)	548
XceI	RCATGY	1 cut(s)	318
XcmI	CCANNNNNNNNNTGG	2 cut(s)	104, 159
XmaJI	CCTAGG	2 cut(s)	579, 624
XspI	CTAG	4 cut(s)	580, 625, 658, 904
Zsp2I	ATGCAT	2 cut(s)	200, 209

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.