AT3G26085

CAAX protease self-immunity

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
3
OG0010085
Physical Location & Seq
Forward (+)
9530595 .. 9532613
2019 bp
Loading structure...
UTR
Exon/CDS
Intron
AT3G26085.4

Sequence Viewer

Length: 882 bp
ATGGGTTCCATCGCTCTGCAATCTTGGAGCAGAGGAGCTTCAACTTCTCTTCATCTCCTTTTTCGTCCAGTTGGCTCGAACCCTAAGCTATATGATGCTCGAAGAGTACAATTTGATGTAAGAGCCTCTTCAAGTCGTAAATCACTTAAGAAACTCAAAAGAGAGTCACAACAAGGTAAAGACATAGGCTTAAGAAATGTTACAGATGAAGAAGTTTCTTCTCCAAGATTTGAGGAAGCTCAAGTTGATTCTTCAACTTCAAAGGACTCCATTGATGTTTTTGTTGCTGCTCCTCGAGACAAAGTGCTTCAGGCTTGCACTGTAACTTCCGGTTTGATGGCTGCACTAGGTCTGATCATCAGAAAGGCGTCTCATGTTGCTTCGACTGAAGGATTACTGGTTCCAGACTGCTCTATAGATGTACCATTTGGGTTTGAAACTTGGCATCTCGGTTTAATTGCTGGAATCGTTGTGTTTATATCGTCAAGTAGGTTCTTGCTACTTAAATCTTGGCCAGATTTTGCTGATTCTAGTGAAGCAGCAAACCGACAGATTCTCACTTCCCTCGAACCTCTAGATTACCTTGTTGTTGCAATGTTACCGGGAATAAGTGAGGAGCTGCTGTTTAGAGGTGCATTAATGCCTTTGTTCGGAACTAATTGGAATGGTATTGTAGCGGTTGGCCTCATTTTCGGTTTACTTCATCTCGGGAGCGGAAGAAAGTATTCTTTTGCAGTTTGGGCTTCGATTGTCGGTATAGTCTACGGTTATGCAGCTGTTTTGTCGTCGAGTCTTATCGTTCCAATGGCCTCGCACGCACTCAACAATTTGGTGGGAGGTCTGTTGTGGCGATATAGTTCCAAGATCAAGTCATTGGAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Abi

Protein Analysis

293

Amino Acids

31.76

Weight (kDa)

9.05

Isoelectric Point (pI)

38.66

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Rce1-like PF02517 170 - 257 2.6e-18 Type II CAAX prenyl endopeptidase Rce1-like
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 714
AccI GTMKAC 1 cut(s) 762
AciI CCGC 2 cut(s) 677, 714
AcoI YGGCCR 1 cut(s) 512
AcuI CTGAAG 2 cut(s) 293, 408
AcyI GRCGYC 1 cut(s) 368
AfaI GTAC 2 cut(s) 108, 423
AfiI CCNNNNNNNGG 1 cut(s) 650
AflII CTTAAG 2 cut(s) 146, 190
AgsI TTSAA 5 cut(s) 42, 132, 255, 261, 437
AloI GAACNNNNNNTCC 2 cut(s) 384, 416
AluBI AGCT 5 cut(s) 38, 88, 239, 619, 776
AluI AGCT 5 cut(s) 38, 88, 239, 619, 776
Alw26I GTCTC 2 cut(s) 291, 375
Ama87I CYCGRG 2 cut(s) 294, 707
AoxI GGCC 3 cut(s) 512, 682, 807
ApeKI GCWGC 5 cut(s) 287, 341, 539, 619, 773
AseI ATTAAT 1 cut(s) 638
Asp700I GAANNNNTTC 1 cut(s) 724
AsuC2I CCSGG 1 cut(s) 603
AvaI CYCGRG 2 cut(s) 294, 707
BalI TGGCCA 1 cut(s) 514
BbvI GCAGC 5 cut(s) 274, 328, 551, 606, 785
BccI CCATC 2 cut(s) 17, 331
BclI TGATCA 1 cut(s) 354
BcnI CCSGG 1 cut(s) 603
BcoDI GTCTC 2 cut(s) 291, 375
BfaI CTAG 3 cut(s) 347, 531, 575
BfmI CTRYAG 1 cut(s) 414
BfrI CTTAAG 2 cut(s) 146, 190
BisI GCNGC 5 cut(s) 288, 342, 540, 620, 774
BlsI GCNGC 5 cut(s) 289, 343, 541, 621, 775
Bme1390I CCNGG 1 cut(s) 603
BmeT110I CYCGRG 2 cut(s) 294, 707
BmiI GGNNCC 2 cut(s) 7, 402
BmrFI CCNGG 1 cut(s) 603
BmsI GCATC 2 cut(s) 85, 454
Bpu10I CCTNAGC 1 cut(s) 84
BpuEI CTTGAG 1 cut(s) 225
BpuMI CCSGG 1 cut(s) 603
BsaHI GRCGYC 1 cut(s) 368
BsaWI WCCGGW 1 cut(s) 329
BsaXI ACNNNNNCTCC 2 cut(s) 608, 638
Bsc4I CCNNNNNNNGG 1 cut(s) 650
Bse1I ACTGG 2 cut(s) 68, 402
Bse3DI GCAATG 1 cut(s) 600
BseLI CCNNNNNNNGG 1 cut(s) 650
BseMI GCAATG 1 cut(s) 600
BseNI ACTGG 2 cut(s) 68, 402
BseRI GAGGAG 3 cut(s) 48, 282, 629
BseXI GCAGC 5 cut(s) 274, 328, 551, 606, 785
BsgI GTGCAG 1 cut(s) 327
BshFI GGCC 3 cut(s) 514, 684, 809
BsiHKCI CYCGRG 2 cut(s) 294, 707
BsiSI CCGG 2 cut(s) 330, 602
BslI CCNNNNNNNGG 1 cut(s) 650
BsmAI GTCTC 2 cut(s) 291, 375
BsmBI CGTCTC 1 cut(s) 375
BsnI GGCC 3 cut(s) 514, 684, 809
BsoBI CYCGRG 2 cut(s) 294, 707
Bsp143I GATC 2 cut(s) 354, 864
BspACI CCGC 2 cut(s) 677, 714
BspANI GGCC 3 cut(s) 514, 684, 809
BspLI GGNNCC 2 cut(s) 7, 402
BspTI CTTAAG 2 cut(s) 146, 190
BsrBI CCGCTC 1 cut(s) 714
BsrDI GCAATG 1 cut(s) 600
BsrI ACTGG 2 cut(s) 68, 402
BssMI GATC 2 cut(s) 354, 864
BssNI GRCGYC 1 cut(s) 368
Bst4CI ACNGT 2 cut(s) 322, 767
Bst6I CTCTTC 3 cut(s) 54, 97, 133
BstACI GRCGYC 1 cut(s) 368
BstAFI CTTAAG 2 cut(s) 146, 190
BstC8I GCNNGC 2 cut(s) 316, 816
BstDEI CTNAG 1 cut(s) 84
BstKTI GATC 2 cut(s) 357, 867
BstMAI GTCTC 2 cut(s) 291, 375
BstMBI GATC 2 cut(s) 354, 864
BstMWI GCNNNNNNNGC 2 cut(s) 740, 815
BstSCI CCNGG 1 cut(s) 601
BstSFI CTRYAG 1 cut(s) 414
BstV1I GCAGC 5 cut(s) 274, 328, 551, 606, 785
BsuRI GGCC 3 cut(s) 514, 684, 809
BtsIMutI CAGTG 1 cut(s) 318
Cac8I GCNNGC 2 cut(s) 316, 816
CseI GACGC 1 cut(s) 357
Csp6I GTAC 2 cut(s) 107, 422
CviAII CATG 1 cut(s) 374
CviQI GTAC 2 cut(s) 107, 422
DdeI CTNAG 1 cut(s) 84
DpnI GATC 2 cut(s) 356, 866
DpnII GATC 2 cut(s) 354, 864
EaeI YGGCCR 1 cut(s) 512
Eam1104I CTCTTC 3 cut(s) 54, 97, 133
EarI CTCTTC 3 cut(s) 54, 97, 133
Eco57I CTGAAG 2 cut(s) 293, 408
Eco88I CYCGRG 2 cut(s) 294, 707
Esp3I CGTCTC 1 cut(s) 375
FaeI CATG 1 cut(s) 377
FaiI YATR 9 cut(s) 91, 93, 185, 375, 416, 479, 758, 771, 855
FalI AAGNNNNNCTT 2 cut(s) 112, 144
FatI CATG 1 cut(s) 373
FbaI TGATCA 1 cut(s) 354
FblI GTMKAC 1 cut(s) 762
Fnu4HI GCNGC 5 cut(s) 288, 342, 540, 620, 774
Fsp4HI GCNGC 5 cut(s) 288, 342, 540, 620, 774
FspBI CTAG 3 cut(s) 347, 531, 575
GluI GCNGC 5 cut(s) 288, 342, 540, 620, 774
HaeIII GGCC 3 cut(s) 514, 684, 809
HapII CCGG 2 cut(s) 330, 602
HgaI GACGC 1 cut(s) 357
Hin1I GRCGYC 1 cut(s) 368
Hin1II CATG 1 cut(s) 377
HinfI GANTC 7 cut(s) 164, 248, 266, 465, 527, 553, 790
HpaII CCGG 2 cut(s) 330, 602
Hpy166II GTNNAC 2 cut(s) 698, 763
Hpy188I TCNGA 3 cut(s) 354, 362, 653
Hpy188III TCNNGA 4 cut(s) 296, 404, 575, 709
Hpy8I GTNNAC 2 cut(s) 698, 763
Hpy99I CGWCG 1 cut(s) 790
HpyAV CCTTC 1 cut(s) 383
HpyCH4III ACNGT 2 cut(s) 322, 767
HpyCH4V TGCA 7 cut(s) 19, 318, 344, 593, 635, 734, 773
HpyF10VI GCNNNNNNNGC 2 cut(s) 740, 815
HpyF3I CTNAG 1 cut(s) 84
Hsp92I GRCGYC 1 cut(s) 368
Hsp92II CATG 1 cut(s) 377
Ksp22I TGATCA 1 cut(s) 354
Kzo9I GATC 2 cut(s) 354, 864
LmnI GCTCC 5 cut(s) 27, 35, 295, 616, 711
LpnPI CCDG 8 cut(s) 81, 296, 343, 383, 417, 447, 528, 615
Lsp1109I GCAGC 5 cut(s) 274, 328, 551, 606, 785
LweI GCATC 2 cut(s) 85, 454
MaeI CTAG 3 cut(s) 347, 531, 575
MaeIII GTNAC 4 cut(s) 165, 199, 322, 597
MalI GATC 2 cut(s) 356, 866
MbiI CCGCTC 1 cut(s) 714
MboI GATC 2 cut(s) 354, 864
MboII GAAGA 7 cut(s) 41, 114, 120, 210, 221, 243, 729
MlsI TGGCCA 1 cut(s) 514
MluCI AATT 4 cut(s) 110, 456, 658, 826
MluNI TGGCCA 1 cut(s) 514
MlyI GAGTC 3 cut(s) 173, 260, 799
Mox20I TGGCCA 1 cut(s) 514
MroXI GAANNNNTTC 1 cut(s) 724
MscI TGGCCA 1 cut(s) 514
MseI TTAA 5 cut(s) 147, 191, 455, 504, 638
MslI CAYNNNNRTG 1 cut(s) 877
Msp20I TGGCCA 1 cut(s) 514
MspA1I CMGCKG 1 cut(s) 776
MspCI CTTAAG 2 cut(s) 146, 190
MspI CCGG 2 cut(s) 330, 602
MspR9I CCNGG 1 cut(s) 603
MwoI GCNNNNNNNGC 2 cut(s) 740, 815
NciI CCSGG 1 cut(s) 603
NdeII GATC 2 cut(s) 354, 864
NlaIII CATG 1 cut(s) 377
NlaIV GGNNCC 2 cut(s) 7, 402
NmuCI GTSAC 1 cut(s) 165
PaeR7I CTCGAG 1 cut(s) 294
PdmI GAANNNNTTC 1 cut(s) 724
PfeI GAWTC 4 cut(s) 248, 465, 527, 553
PkrI GCNGC 5 cut(s) 289, 343, 541, 621, 775
PleI GAGTC 3 cut(s) 172, 260, 798
PpsI GAGTC 3 cut(s) 172, 260, 798
PshBI ATTAAT 1 cut(s) 638
PspN4I GGNNCC 2 cut(s) 7, 402
PvuII CAGCTG 1 cut(s) 776
RsaI GTAC 2 cut(s) 108, 423
RsaNI GTAC 2 cut(s) 107, 422
RseI CAYNNNNRTG 1 cut(s) 877
SaqAI TTAA 5 cut(s) 147, 191, 455, 504, 638
SatI GCNGC 5 cut(s) 288, 342, 540, 620, 774
Sau3AI GATC 2 cut(s) 354, 864
SchI GAGTC 3 cut(s) 173, 260, 799
ScrFI CCNGG 1 cut(s) 603
SfaNI GCATC 2 cut(s) 85, 454
SfcI CTRYAG 1 cut(s) 414
Sfr274I CTCGAG 1 cut(s) 294
SlaI CTCGAG 1 cut(s) 294
SmiMI CAYNNNNRTG 1 cut(s) 877
SmlI CTYRAG 4 cut(s) 146, 190, 240, 294
SmoI CTYRAG 4 cut(s) 146, 190, 240, 294
Sse9I AATT 4 cut(s) 110, 456, 658, 826
SsiI CCGC 2 cut(s) 677, 714
SspMI CTAG 3 cut(s) 347, 531, 575
StyD4I CCNGG 1 cut(s) 601
TaaI ACNGT 2 cut(s) 322, 767
TaqI TCGA 7 cut(s) 77, 100, 295, 383, 567, 746, 788
TasI AATT 4 cut(s) 110, 456, 658, 826
TatI WGTACW 1 cut(s) 106
TfiI GAWTC 4 cut(s) 248, 465, 527, 553
Tru1I TTAA 5 cut(s) 147, 191, 455, 504, 638
Tru9I TTAA 5 cut(s) 147, 191, 455, 504, 638
TscAI CASTG 1 cut(s) 325
TseFI GTSAC 1 cut(s) 165
TseI GCWGC 5 cut(s) 287, 341, 539, 619, 773
Tsp45I GTSAC 1 cut(s) 165
TspDTI ATGAA 3 cut(s) 41, 222, 692
TspRI CASTG 1 cut(s) 325
Vha464I CTTAAG 2 cut(s) 146, 190
VspI ATTAAT 1 cut(s) 638
XbaI TCTAGA 1 cut(s) 574
XhoI CTCGAG 1 cut(s) 294
XmiI GTMKAC 1 cut(s) 762
XmnI GAANNNNTTC 1 cut(s) 724
XspI CTAG 3 cut(s) 347, 531, 575
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.