FvH4_4g24960

CAAX protease self-immunity

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb4
OG0010085
Physical Location & Seq
Forward (+)
26901201 .. 26904784
3584 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_4g24960.t2

Sequence Viewer

Length: 909 bp
ATGTGTTCGCTTATGTTAAACAATGCCTCTGCTACTTCATTGACCTGGGGGAGCTCTATCTTCACTTGTGGGAAGTGTATTGGCTTCTATGATGTGCAAAGGTGTTTACCAGCCAAATCATGCAGTGGAGTTGCATTCAGGCCAAGAGCTTTTGCAAGTCGGAATTCTGTGAAGAAGTTGAGAAGGGAGAGGCTAGCAAGCGAAAGGGTAGCTGATAAGACTACTGCTAGTTCTGAAAATGTTCAAAATGTTGACAAGGTGGAGCTTTCTGATGATTCAGCTGCAGAGAAAGGAGTTAATATCCCTTCCAGAGGTGCTGTGCTTCAGGCTTGCACTGTTACTTCCGGGTTGATAGCTGCTTTGGGTATACTAATACGACAGGCATCTCATGTTGCATCAATCGAAGGATTACCAGTCATTGACTGCTCATTGGAAGTATCATTTGAGTTTGAGACATGGCATCTTCAGTTGATTGCGGGATTGGTTATTTTGATATCATCATCACGATACCTATTACTGAAGACATGGCCAGAATTCGCAGAGTCTAGCAAAGCAGCCAATCAACAGGTACTTACTTCACTTCAACCTTTGGATTTCATAATCGTTTCATTTTTGCCTGGGTTCAGCGAGGAACTTCTTTTCCGTGGTGCACTGCAACCTCTTTTTGGATCCAATTTGAGTAGTGCCTTGGTGGTTGCCCTTGTCTTTGGTGCTCTACACCTTGGCAGTGGCCGAAAGTATTCCTTCGCAGTCTGGGCAAGTTTGGTTGGCTTTGTGTATGGTTATGCAACCATTGCATCTTCTAGCCTTGTTGTGCCAATGGTTTCTCATGCAATGAACAACTTGGTGGGAGGGATTTTATGGCAATACAGATCAGATTCATCGCGACAGATATCAGATTCAAACTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Abi

Protein Analysis

303

Amino Acids

32.51

Weight (kDa)

8.47

Isoelectric Point (pI)

43.6

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Rce1-like PF02517 195 - 283 8.3e-18 Type II CAAX prenyl endopeptidase Rce1-like
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 367
AccII CGCG 1 cut(s) 886
AciI CCGC 1 cut(s) 476
AclWI GGATC 2 cut(s) 663, 676
AcoI YGGCCR 2 cut(s) 527, 730
AcsI RAATTY 2 cut(s) 163, 533
AcuI CTGAAG 3 cut(s) 308, 449, 539
AfaI GTAC 1 cut(s) 570
AfiI CCNNNNNNNGG 2 cut(s) 311, 665
AgsI TTSAA 3 cut(s) 245, 584, 903
AjnI CCWGG 2 cut(s) 44, 616
AloI GAACNNNNNNTCC 2 cut(s) 624, 656
AluBI AGCT 6 cut(s) 54, 149, 212, 265, 281, 356
AluI AGCT 6 cut(s) 54, 149, 212, 265, 281, 356
Alw21I GWGCWC 3 cut(s) 56, 652, 715
Alw26I GTCTC 1 cut(s) 446
Alw44I GTGCAC 1 cut(s) 648
AlwI GGATC 2 cut(s) 663, 676
AoxI GGCC 3 cut(s) 140, 527, 730
ApaLI GTGCAC 1 cut(s) 648
ApeKI GCWGC 3 cut(s) 281, 356, 554
ApoI RAATTY 2 cut(s) 163, 533
Asp700I GAANNNNTTC 2 cut(s) 240, 739
AsuC2I CCSGG 1 cut(s) 346
AsuNHI GCTAGC 1 cut(s) 193
BaeGI GKGCMC 1 cut(s) 652
BalI TGGCCA 1 cut(s) 529
BamHI GGATCC 1 cut(s) 668
BanII GRGCYC 1 cut(s) 56
BbsI GAAGAC 1 cut(s) 527
Bbv12I GWGCWC 3 cut(s) 56, 652, 715
BbvI GCAGC 3 cut(s) 268, 343, 566
BciT130I CCWGG 2 cut(s) 46, 618
BcnI CCSGG 1 cut(s) 346
BcoDI GTCTC 1 cut(s) 446
BfaI CTAG 5 cut(s) 194, 228, 546, 804, 907
BfmI CTRYAG 1 cut(s) 282
BisI GCNGC 3 cut(s) 282, 357, 555
BlsI GCNGC 3 cut(s) 283, 358, 556
Bme1390I CCNGG 3 cut(s) 46, 346, 618
BmiI GGNNCC 1 cut(s) 670
BmrFI CCNGG 3 cut(s) 46, 346, 618
BmsI GCATC 4 cut(s) 392, 404, 469, 806
BmtI GCTAGC 1 cut(s) 197
BpiI GAAGAC 1 cut(s) 527
BpuMI CCSGG 1 cut(s) 346
BsaJI CCNNGG 5 cut(s) 45, 617, 643, 687, 721
Bsc4I CCNNNNNNNGG 2 cut(s) 311, 665
Bse1I ACTGG 1 cut(s) 413
Bse3DI GCAATG 2 cut(s) 792, 840
BseBI CCWGG 2 cut(s) 46, 618
BseDI CCNNGG 5 cut(s) 45, 617, 643, 687, 721
BseLI CCNNNNNNNGG 2 cut(s) 311, 665
BseMI GCAATG 2 cut(s) 792, 840
BseNI ACTGG 1 cut(s) 413
BseSI GKGCMC 1 cut(s) 652
BseXI GCAGC 3 cut(s) 268, 343, 566
Bsh1236I CGCG 1 cut(s) 886
BshFI GGCC 3 cut(s) 142, 529, 732
BsiHKAI GWGCWC 3 cut(s) 56, 652, 715
BsiSI CCGG 1 cut(s) 345
BslI CCNNNNNNNGG 2 cut(s) 311, 665
BsmAI GTCTC 1 cut(s) 446
BsmI GAATGC 1 cut(s) 134
BsnI GGCC 3 cut(s) 142, 529, 732
Bsp1286I GDGCHC 3 cut(s) 56, 652, 715
Bsp143I GATC 2 cut(s) 668, 872
Bsp68I TCGCGA 1 cut(s) 886
BspACI CCGC 1 cut(s) 476
BspANI GGCC 3 cut(s) 142, 529, 732
BspFNI CGCG 1 cut(s) 886
BspLI GGNNCC 1 cut(s) 670
BspMAI CTGCAG 1 cut(s) 286
BspOI GCTAGC 1 cut(s) 197
BspPI GGATC 2 cut(s) 663, 676
BsrDI GCAATG 2 cut(s) 792, 840
BsrI ACTGG 1 cut(s) 413
BssECI CCNNGG 5 cut(s) 45, 617, 643, 687, 721
BssMI GATC 2 cut(s) 668, 872
BssNAI GTATAC 1 cut(s) 368
BssT1I CCWWGG 2 cut(s) 687, 721
Bst1107I GTATAC 1 cut(s) 368
Bst2UI CCWGG 2 cut(s) 46, 618
Bst4CI ACNGT 1 cut(s) 337
BstAPI GCANNNNNTGC 1 cut(s) 794
BstC8I GCNNGC 3 cut(s) 195, 199, 331
BstDSI CCRYGG 1 cut(s) 643
BstENI CCTNNNNNAGG 1 cut(s) 309
BstFNI CGCG 1 cut(s) 886
BstKTI GATC 2 cut(s) 671, 875
BstMAI GTCTC 1 cut(s) 446
BstMBI GATC 2 cut(s) 668, 872
BstMWI GCNNNNNNNGC 2 cut(s) 755, 794
BstNI CCWGG 2 cut(s) 46, 618
BstSCI CCNGG 3 cut(s) 44, 344, 616
BstSFI CTRYAG 1 cut(s) 282
BstSLI GKGCMC 1 cut(s) 652
BstUI CGCG 1 cut(s) 886
BstV1I GCAGC 3 cut(s) 268, 343, 566
BstV2I GAAGAC 1 cut(s) 527
BstX2I RGATCY 1 cut(s) 668
BstYI RGATCY 1 cut(s) 668
BstZ17I GTATAC 1 cut(s) 368
BsuRI GGCC 3 cut(s) 142, 529, 732
BtgI CCRYGG 1 cut(s) 643
BtgZI GCGATG 1 cut(s) 867
BtsI GCAGTG 3 cut(s) 130, 650, 733
BtsIMutI CAGTG 4 cut(s) 130, 333, 650, 733
BtuMI TCGCGA 1 cut(s) 886
Cac8I GCNNGC 3 cut(s) 195, 199, 331
Csp6I GTAC 1 cut(s) 569
CviAII CATG 5 cut(s) 120, 389, 456, 525, 830
CviQI GTAC 1 cut(s) 569
DpnI GATC 2 cut(s) 670, 874
DpnII GATC 2 cut(s) 668, 872
EaeI YGGCCR 2 cut(s) 527, 730
Ecl136II GAGCTC 1 cut(s) 54
Eco130I CCWWGG 2 cut(s) 687, 721
Eco24I GRGCYC 1 cut(s) 56
Eco32I GATATC 2 cut(s) 495, 894
Eco53kI GAGCTC 1 cut(s) 54
Eco57I CTGAAG 3 cut(s) 308, 449, 539
EcoICRI GAGCTC 1 cut(s) 54
EcoNI CCTNNNNNAGG 1 cut(s) 309
EcoRI GAATTC 2 cut(s) 163, 533
EcoRII CCWGG 2 cut(s) 44, 616
EcoRV GATATC 2 cut(s) 495, 894
EcoT14I CCWWGG 2 cut(s) 687, 721
EcoT38I GRGCYC 1 cut(s) 56
ErhI CCWWGG 2 cut(s) 687, 721
FaeI CATG 5 cut(s) 123, 392, 459, 528, 833
FalI AAGNNNNNCTT 2 cut(s) 728, 760
FatI CATG 5 cut(s) 119, 388, 455, 524, 829
FauI CCCGC 1 cut(s) 469
FblI GTMKAC 1 cut(s) 367
Fnu4HI GCNGC 3 cut(s) 282, 357, 555
FriOI GRGCYC 1 cut(s) 56
Fsp4HI GCNGC 3 cut(s) 282, 357, 555
FspBI CTAG 5 cut(s) 194, 228, 546, 804, 907
GluI GCNGC 3 cut(s) 282, 357, 555
HaeIII GGCC 3 cut(s) 142, 529, 732
HapII CCGG 1 cut(s) 345
Hin1II CATG 5 cut(s) 123, 392, 459, 528, 833
HincII GTYRAC 1 cut(s) 253
HindII GTYRAC 1 cut(s) 253
HinfI GANTC 4 cut(s) 275, 542, 878, 899
HpaII CCGG 1 cut(s) 345
Hpy166II GTNNAC 4 cut(s) 107, 253, 368, 650
Hpy188I TCNGA 5 cut(s) 162, 235, 271, 877, 898
Hpy188III TCNNGA 3 cut(s) 309, 504, 885
Hpy8I GTNNAC 4 cut(s) 107, 253, 368, 650
HpyAV CCTTC 4 cut(s) 177, 315, 398, 754
HpyCH4III ACNGT 1 cut(s) 337
HpyF10VI GCNNNNNNNGC 2 cut(s) 755, 794
Hsp92II CATG 5 cut(s) 123, 392, 459, 528, 833
Kzo9I GATC 2 cut(s) 668, 872
LmnI GCTCC 2 cut(s) 51, 262
Lsp1109I GCAGC 3 cut(s) 268, 343, 566
LweI GCATC 4 cut(s) 392, 404, 469, 806
MaeI CTAG 5 cut(s) 194, 228, 546, 804, 907
MaeIII GTNAC 1 cut(s) 337
MalI GATC 2 cut(s) 670, 874
MboI GATC 2 cut(s) 668, 872
MboII GAAGA 5 cut(s) 52, 184, 455, 532, 792
MflI RGATCY 1 cut(s) 668
MhlI GDGCHC 3 cut(s) 56, 652, 715
MlsI TGGCCA 1 cut(s) 529
MluCI AATT 3 cut(s) 163, 533, 673
MluNI TGGCCA 1 cut(s) 529
MlyI GAGTC 1 cut(s) 551
MmeI TCCRAC 1 cut(s) 140
MnlI CCTC 6 cut(s) 37, 183, 305, 622, 669, 845
Mox20I TGGCCA 1 cut(s) 529
MroXI GAANNNNTTC 2 cut(s) 240, 739
MscI TGGCCA 1 cut(s) 529
MseI TTAA 2 cut(s) 17, 297
Msp20I TGGCCA 1 cut(s) 529
MspA1I CMGCKG 1 cut(s) 281
MspI CCGG 1 cut(s) 345
MspR9I CCNGG 3 cut(s) 46, 346, 618
Mva1269I GAATGC 1 cut(s) 134
MvaI CCWGG 2 cut(s) 46, 618
MvnI CGCG 1 cut(s) 886
MwoI GCNNNNNNNGC 2 cut(s) 755, 794
NciI CCSGG 1 cut(s) 346
NdeII GATC 2 cut(s) 668, 872
NheI GCTAGC 1 cut(s) 193
NlaIII CATG 5 cut(s) 123, 392, 459, 528, 833
NlaIV GGNNCC 1 cut(s) 670
NruI TCGCGA 1 cut(s) 886
PctI GAATGC 1 cut(s) 134
PdmI GAANNNNTTC 2 cut(s) 240, 739
PfeI GAWTC 3 cut(s) 275, 878, 899
PkrI GCNGC 3 cut(s) 283, 358, 556
PleI GAGTC 1 cut(s) 550
PpsI GAGTC 1 cut(s) 550
Psp124BI GAGCTC 1 cut(s) 56
Psp6I CCWGG 2 cut(s) 44, 616
PspGI CCWGG 2 cut(s) 44, 616
PspN4I GGNNCC 1 cut(s) 670
PstI CTGCAG 1 cut(s) 286
PsuI RGATCY 1 cut(s) 668
PvuII CAGCTG 1 cut(s) 281
RruI TCGCGA 1 cut(s) 886
RsaI GTAC 1 cut(s) 570
RsaNI GTAC 1 cut(s) 569
SacI GAGCTC 1 cut(s) 56
SaqAI TTAA 2 cut(s) 17, 297
SatI GCNGC 3 cut(s) 282, 357, 555
Sau3AI GATC 2 cut(s) 668, 872
SchI GAGTC 1 cut(s) 551
ScrFI CCNGG 3 cut(s) 46, 346, 618
SduI GDGCHC 3 cut(s) 56, 652, 715
SfaNI GCATC 4 cut(s) 392, 404, 469, 806
SfcI CTRYAG 1 cut(s) 282
Sse9I AATT 3 cut(s) 163, 533, 673
SsiI CCGC 1 cut(s) 476
SspMI CTAG 5 cut(s) 194, 228, 546, 804, 907
SstI GAGCTC 1 cut(s) 56
StyD4I CCNGG 3 cut(s) 44, 344, 616
StyI CCWWGG 2 cut(s) 687, 721
TaaI ACNGT 1 cut(s) 337
TaqI TCGA 1 cut(s) 402
TasI AATT 3 cut(s) 163, 533, 673
TfiI GAWTC 3 cut(s) 275, 878, 899
Tru1I TTAA 2 cut(s) 17, 297
Tru9I TTAA 2 cut(s) 17, 297
TscAI CASTG 4 cut(s) 130, 340, 657, 733
TseI GCWGC 3 cut(s) 281, 356, 554
TspDTI ATGAA 5 cut(s) 27, 586, 597, 851, 870
TspGWI ACGGA 1 cut(s) 632
TspRI CASTG 4 cut(s) 130, 340, 657, 733
VneI GTGCAC 1 cut(s) 648
XagI CCTNNNNNAGG 1 cut(s) 309
XapI RAATTY 2 cut(s) 163, 533
XmiI GTMKAC 1 cut(s) 367
XmnI GAANNNNTTC 2 cut(s) 240, 739
XspI CTAG 5 cut(s) 194, 228, 546, 804, 907
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.