Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr16

Orthogroup ID

OG0010085

Physical Location & Seq

Genomic Coordinates Reverse (-)

6152989 .. 6155414

Gene Structure 2426 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom16g09180.5

Sequence Viewer

CDS Protein Promoter (2k)

Length: 873 bp

ATGGGTTCCCTTTCTGTGATCCCATTGAGTTGGGGAAGCTCTATCTTCGTTGGTGGGAAGTTTGACGTGCACAAAGTTTTGCCTCCCAAATTATGTAGTGGAGTTGCAATTAGCCCGAGAGCTTTTGCAAGTCAGAATTCGGTGAAGAAATTGAGAAGGGACGGGCAGGCACGAAAAAAGGTAGCAGATAAGAGCATTGCTTCCGAAGATGATTGTGTTAAAAATGACGAGAATGTGGAATCTTGTGTTAATTTAGCTGCAGAGGAACCGGTTGCATTCCCTTCCAGAGGTGCTGTGCTTCAGGCTTGCACTGTTACATCCGGGTTGATAGCGGCTTTGGGTATAATTATTCGACAGGCATCTCATGTTGCATCAATGGAAGGATTGCCTGTCTTTGACTGCTCATTGGAAGTACCATTTGATTTTGAGGTGTGGCATCTTCAGTTGATTTCAGGATTGGTCATTCTGATATCACTTAGCCGATATCTATTATTGAAGACATGGCCGGATTTTGCGGAGTCCAGCGAAGCAGCCAATCAGCAGGTTCTTACATCACTTCAACCTTTCGATTACATAATCGTTGCATTTTTGCCCGGGGTCAGTGAGGAAATTCTTTTTCGGGGTGCCTTGCTACCACTTTTTGGATCTAATTGGAGGAGCGCCTTGGTAGTCGCCATCATTTTTGGTGTTCTACACCTGGGCAGTGGCCGAAAGTATTCCTTCGCTGTTTGGGCAACTTTTGTGGGTCTTGTGTATGGTTATGCAACCGTCGTCTCCTCTAGCCTTATCGTGCCAATGGCTTCTCATGCAGTCAACAATTTGGTTGGAGGGATGTTATGGCGTTACCGATCAGATTCATCACGGAAGATATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Abi

Protein Analysis

291

Amino Acids

31.35

Weight (kDa)

8.25

Isoelectric Point (pI)

44.92

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010085)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G26085 AT3G26085 AT3G26085 AT3G26085
fragaria_vesca	FvH4_4g24960 FvH4_4g24960
malus_domestica	MD13G1107700.v1.1 MD16G1107600.v1.1
prunus_persica	Prupe.1G238700_v2.0.a1 Prupe.1G238700_v2.0.a1 Prupe.1G238700_v2.0.a1 Prupe.1G238700_v2.0.a1 Prupe.1G238700_v2.0.a1
pyrus_communis	pycom16g09180
rosa_chinensis	RchiOBHm_Chr4g0432001
rosa_multiflora	Rmu_sc0040810.1_g000001
rosa_roxburghii	Rroxscaffold_5G00373550
rosa_samantha	Rh4BG318600 Rh4CG333900 Rh4DG313500
rosa_wichuraiana	Rw4G027080

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	532
AccB1I	GGYRCC	1 cut(s)	623
AccB7I	CCANNNNNTGG	1 cut(s)	641
AciI	CCGC	2 cut(s)	332, 515
AclWI	GGATC	2 cut(s)	13, 652
AcoI	YGGCCR	2 cut(s)	503, 706
AcsI	RAATTY	2 cut(s)	136, 609
AcuI	CTGAAG	2 cut(s)	284, 425
AfaI	GTAC	1 cut(s)	414
AfiI	CCNNNNNNNGG	2 cut(s)	287, 641
AgeI	ACCGGT	1 cut(s)	268
AgsI	TTSAA	2 cut(s)	496, 560
AjiI	CACGTC	1 cut(s)	67
AjnI	CCWGG	1 cut(s)	696
AluBI	AGCT	3 cut(s)	39, 122, 257
AluI	AGCT	3 cut(s)	39, 122, 257
Alw21I	GWGCWC	1 cut(s)	72
Alw26I	GTCTC	1 cut(s)	778
Alw44I	GTGCAC	1 cut(s)	68
AlwI	GGATC	2 cut(s)	13, 652
Ama87I	CYCGRG	2 cut(s)	115, 593
AoxI	GGCC	2 cut(s)	503, 706
ApaLI	GTGCAC	1 cut(s)	68
ApeKI	GCWGC	2 cut(s)	257, 530
ApoI	RAATTY	2 cut(s)	136, 609
AsiGI	ACCGGT	1 cut(s)	268
Asp700I	GAANNNNTTC	1 cut(s)	715
AspLEI	GCGC	1 cut(s)	662
AsuC2I	CCSGG	3 cut(s)	322, 594, 595
AsuHPI	GGTGA	1 cut(s)	154
AvaI	CYCGRG	2 cut(s)	115, 593
BaeGI	GKGCMC	1 cut(s)	72
BanI	GGYRCC	1 cut(s)	623
BbsI	GAAGAC	1 cut(s)	503
Bbv12I	GWGCWC	1 cut(s)	72
BbvI	GCAGC	2 cut(s)	244, 542
BccI	CCATC	1 cut(s)	683
BciT130I	CCWGG	1 cut(s)	698
BcnI	CCSGG	3 cut(s)	322, 594, 595
BcoDI	GTCTC	1 cut(s)	778
BfaI	CTAG	1 cut(s)	780
BfmI	CTRYAG	1 cut(s)	258
BfoI	RGCGCY	1 cut(s)	663
BfuAI	ACCTGC	1 cut(s)	532
BisI	GCNGC	3 cut(s)	258, 333, 531
BlsI	GCNGC	3 cut(s)	259, 334, 532
Bme1390I	CCNGG	4 cut(s)	322, 594, 595, 698
BmeT110I	CYCGRG	2 cut(s)	115, 593
BmgBI	CACGTC	1 cut(s)	67
BmiI	GGNNCC	3 cut(s)	7, 267, 625
BmrFI	CCNGG	4 cut(s)	322, 594, 595, 698
BmsI	GCATC	3 cut(s)	368, 380, 445
BpiI	GAAGAC	1 cut(s)	503
BpuMI	CCSGG	3 cut(s)	322, 594, 595
BsaJI	CCNNGG	4 cut(s)	593, 594, 663, 697
BsaWI	WCCGGW	1 cut(s)	268
Bsc4I	CCNNNNNNNGG	2 cut(s)	287, 641
Bse118I	RCCGGY	1 cut(s)	268
Bse3DI	GCAATG	1 cut(s)	195
BseBI	CCWGG	1 cut(s)	698
BseDI	CCNNGG	4 cut(s)	593, 594, 663, 697
BseGI	GGATG	2 cut(s)	317, 837
BseLI	CCNNNNNNNGG	2 cut(s)	287, 641
BseMI	GCAATG	1 cut(s)	195
BseRI	GAGGAG	2 cut(s)	670, 766
BseSI	GKGCMC	1 cut(s)	72
BseXI	GCAGC	2 cut(s)	244, 542
BshFI	GGCC	2 cut(s)	505, 708
BshNI	GGYRCC	1 cut(s)	623
BshTI	ACCGGT	1 cut(s)	268
BsiHKAI	GWGCWC	1 cut(s)	72
BsiHKCI	CYCGRG	2 cut(s)	115, 593
BsiSI	CCGG	4 cut(s)	269, 321, 506, 594
BslFI	GGGAC	1 cut(s)	173
BslI	CCNNNNNNNGG	2 cut(s)	287, 641
BsmAI	GTCTC	1 cut(s)	778
BsmBI	CGTCTC	1 cut(s)	778
BsmFI	GGGAC	1 cut(s)	173
BsmI	GAATGC	1 cut(s)	275
BsnI	GGCC	2 cut(s)	505, 708
BsoBI	CYCGRG	2 cut(s)	115, 593
Bsp1286I	GDGCHC	1 cut(s)	72
Bsp143I	GATC	3 cut(s)	18, 644, 848
BspACI	CCGC	2 cut(s)	332, 515
BspANI	GGCC	2 cut(s)	505, 708
BspLI	GGNNCC	3 cut(s)	7, 267, 625
BspMAI	CTGCAG	1 cut(s)	262
BspMI	ACCTGC	1 cut(s)	532
BspPI	GGATC	2 cut(s)	13, 652
BspT107I	GGYRCC	1 cut(s)	623
BsrDI	GCAATG	1 cut(s)	195
BsrFI	RCCGGY	1 cut(s)	268
BssAI	RCCGGY	1 cut(s)	268
BssECI	CCNNGG	4 cut(s)	593, 594, 663, 697
BssMI	GATC	3 cut(s)	18, 644, 848
BssT1I	CCWWGG	1 cut(s)	663
Bst2UI	CCWGG	1 cut(s)	698
Bst4CI	ACNGT	2 cut(s)	313, 769
BstC8I	GCNNGC	2 cut(s)	168, 307
BstDEI	CTNAG	1 cut(s)	476
BstENI	CCTNNNNNAGG	1 cut(s)	285
BstF5I	GGATG	2 cut(s)	317, 837
BstH2I	RGCGCY	1 cut(s)	663
BstHHI	GCGC	1 cut(s)	662
BstKTI	GATC	3 cut(s)	21, 647, 851
BstMAI	GTCTC	1 cut(s)	778
BstMBI	GATC	3 cut(s)	18, 644, 848
BstMWI	GCNNNNNNNGC	2 cut(s)	731, 806
BstNI	CCWGG	1 cut(s)	698
BstSCI	CCNGG	4 cut(s)	320, 592, 593, 696
BstSFI	CTRYAG	1 cut(s)	258
BstSLI	GKGCMC	1 cut(s)	72
BstV1I	GCAGC	2 cut(s)	244, 542
BstV2I	GAAGAC	1 cut(s)	503
BstX2I	RGATCY	1 cut(s)	644
BstXI	CCANNNNNNTGG	1 cut(s)	30
BstYI	RGATCY	1 cut(s)	644
BsuRI	GGCC	2 cut(s)	505, 708
BtrI	CACGTC	1 cut(s)	67
BtsCI	GGATG	2 cut(s)	317, 837
BtsI	GCAGTG	1 cut(s)	709
BtsIMutI	CAGTG	3 cut(s)	309, 607, 709
BveI	ACCTGC	1 cut(s)	532
Cac8I	GCNNGC	2 cut(s)	168, 307
CfoI	GCGC	1 cut(s)	662
Cfr10I	RCCGGY	1 cut(s)	268
Cfr9I	CCCGGG	1 cut(s)	593
Csp6I	GTAC	1 cut(s)	413
CspAI	ACCGGT	1 cut(s)	268
CspCI	CAANNNNNGTGG	2 cut(s)	723, 758
CviAII	CATG	3 cut(s)	365, 501, 806
CviQI	GTAC	1 cut(s)	413
DdeI	CTNAG	1 cut(s)	476
DpnI	GATC	3 cut(s)	20, 646, 850
DpnII	GATC	3 cut(s)	18, 644, 848
EaeI	YGGCCR	2 cut(s)	503, 706
Eco130I	CCWWGG	1 cut(s)	663
Eco32I	GATATC	2 cut(s)	471, 485
Eco57I	CTGAAG	2 cut(s)	284, 425
Eco88I	CYCGRG	2 cut(s)	115, 593
EcoNI	CCTNNNNNAGG	1 cut(s)	285
EcoRI	GAATTC	1 cut(s)	136
EcoRII	CCWGG	1 cut(s)	696
EcoRV	GATATC	2 cut(s)	471, 485
EcoT14I	CCWWGG	1 cut(s)	663
ErhI	CCWWGG	1 cut(s)	663
Esp3I	CGTCTC	1 cut(s)	778
FaeI	CATG	3 cut(s)	368, 504, 809
FalI	AAGNNNNNCTT	2 cut(s)	704, 736
FaqI	GGGAC	1 cut(s)	173
FatI	CATG	3 cut(s)	364, 500, 805
Fnu4HI	GCNGC	3 cut(s)	258, 333, 531
FokI	GGATG	2 cut(s)	304, 844
Fsp4HI	GCNGC	3 cut(s)	258, 333, 531
FspBI	CTAG	1 cut(s)	780
GlaI	GCGC	1 cut(s)	661
GluI	GCNGC	3 cut(s)	258, 333, 531
HaeII	RGCGCY	1 cut(s)	663
HaeIII	GGCC	2 cut(s)	505, 708
HapII	CCGG	4 cut(s)	269, 321, 506, 594
HhaI	GCGC	1 cut(s)	662
Hin1II	CATG	3 cut(s)	368, 504, 809
Hin6I	GCGC	1 cut(s)	660
HinP1I	GCGC	1 cut(s)	660
HincII	GTYRAC	1 cut(s)	814
HindII	GTYRAC	1 cut(s)	814
HinfI	GANTC	3 cut(s)	239, 518, 854
HpaII	CCGG	4 cut(s)	269, 321, 506, 594
HphI	GGTGA	1 cut(s)	154
Hpy166II	GTNNAC	2 cut(s)	70, 814
Hpy188I	TCNGA	4 cut(s)	135, 205, 468, 853
Hpy188III	TCNNGA	2 cut(s)	285, 453
Hpy8I	GTNNAC	2 cut(s)	70, 814
Hpy99I	CGWCG	1 cut(s)	773
HpyAV	CCTTC	4 cut(s)	150, 291, 374, 730
HpyCH4III	ACNGT	2 cut(s)	313, 769
HpyCH4IV	ACGT	1 cut(s)	66
HpyF10VI	GCNNNNNNNGC	2 cut(s)	731, 806
HpyF3I	CTNAG	1 cut(s)	476
HpySE526I	ACGT	1 cut(s)	66
Hsp92II	CATG	3 cut(s)	368, 504, 809
HspAI	GCGC	1 cut(s)	660
Kzo9I	GATC	3 cut(s)	18, 644, 848
LmnI	GCTCC	1 cut(s)	657
Lsp1109I	GCAGC	2 cut(s)	244, 542
LweI	GCATC	3 cut(s)	368, 380, 445
MaeI	CTAG	1 cut(s)	780
MaeII	ACGT	1 cut(s)	66
MaeIII	GTNAC	2 cut(s)	313, 842
MalI	GATC	3 cut(s)	20, 646, 850
MboI	GATC	3 cut(s)	18, 644, 848
MboII	GAAGA	5 cut(s)	37, 157, 218, 431, 508
MflI	RGATCY	1 cut(s)	644
MhlI	GDGCHC	1 cut(s)	72
MluCI	AATT	9 cut(s)	89, 108, 136, 149, 250, 345, 609, 649, 817
MlyI	GAGTC	1 cut(s)	527
MmeI	TCCRAC	1 cut(s)	805
MnlI	CCTC	8 cut(s)	93, 256, 281, 421, 598, 648, 787, 821
MroXI	GAANNNNTTC	1 cut(s)	715
MseI	TTAA	2 cut(s)	219, 249
MspI	CCGG	4 cut(s)	269, 321, 506, 594
MspR9I	CCNGG	4 cut(s)	322, 594, 595, 698
Mva1269I	GAATGC	1 cut(s)	275
MvaI	CCWGG	1 cut(s)	698
MwoI	GCNNNNNNNGC	2 cut(s)	731, 806
NciI	CCSGG	3 cut(s)	322, 594, 595
NdeII	GATC	3 cut(s)	18, 644, 848
NlaIII	CATG	3 cut(s)	368, 504, 809
NlaIV	GGNNCC	3 cut(s)	7, 267, 625
PctI	GAATGC	1 cut(s)	275
PdmI	GAANNNNTTC	1 cut(s)	715
PfeI	GAWTC	2 cut(s)	239, 854
PflMI	CCANNNNNTGG	1 cut(s)	641
PinAI	ACCGGT	1 cut(s)	268
PkrI	GCNGC	3 cut(s)	259, 334, 532
PleI	GAGTC	1 cut(s)	526
PpsI	GAGTC	1 cut(s)	526
Psp6I	CCWGG	1 cut(s)	696
PspGI	CCWGG	1 cut(s)	696
PspN4I	GGNNCC	3 cut(s)	7, 267, 625
PstI	CTGCAG	1 cut(s)	262
PsuI	RGATCY	1 cut(s)	644
RsaI	GTAC	1 cut(s)	414
RsaNI	GTAC	1 cut(s)	413
SaqAI	TTAA	2 cut(s)	219, 249
SatI	GCNGC	3 cut(s)	258, 333, 531
Sau3AI	GATC	3 cut(s)	18, 644, 848
SchI	GAGTC	1 cut(s)	527
ScrFI	CCNGG	4 cut(s)	322, 594, 595, 698
SduI	GDGCHC	1 cut(s)	72
SfaNI	GCATC	3 cut(s)	368, 380, 445
SfcI	CTRYAG	1 cut(s)	258
SmaI	CCCGGG	1 cut(s)	595
Sse9I	AATT	9 cut(s)	89, 108, 136, 149, 250, 345, 609, 649, 817
SsiI	CCGC	2 cut(s)	332, 515
SspMI	CTAG	1 cut(s)	780
StyD4I	CCNGG	4 cut(s)	320, 592, 593, 696
StyI	CCWWGG	1 cut(s)	663
TaaI	ACNGT	2 cut(s)	313, 769
TaiI	ACGT	1 cut(s)	69
TaqI	TCGA	2 cut(s)	352, 567
TasI	AATT	9 cut(s)	89, 108, 136, 149, 250, 345, 609, 649, 817
TauI	GCSGC	1 cut(s)	335
TfiI	GAWTC	2 cut(s)	239, 854
Tru1I	TTAA	2 cut(s)	219, 249
Tru9I	TTAA	2 cut(s)	219, 249
TscAI	CASTG	3 cut(s)	316, 607, 709
TseI	GCWGC	2 cut(s)	257, 530
TspDTI	ATGAA	1 cut(s)	846
TspMI	CCCGGG	1 cut(s)	593
TspRI	CASTG	3 cut(s)	316, 607, 709
Van91I	CCANNNNNTGG	1 cut(s)	641
VneI	GTGCAC	1 cut(s)	68
XagI	CCTNNNNNAGG	1 cut(s)	285
XapI	RAATTY	2 cut(s)	136, 609
XmaI	CCCGGG	1 cut(s)	593
XmnI	GAANNNNTTC	1 cut(s)	715
XspI	CTAG	1 cut(s)	780

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.