Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp01

Orthogroup ID

OG0010085

Physical Location & Seq

Genomic Coordinates Forward (+)

25325878 .. 25329226

Gene Structure 3349 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.1G238700.4

Sequence Viewer

CDS Protein Promoter (2k)

Length: 924 bp

ATGGGTTTGCTCGCTGTGAACTTTTGGCGGTCTACAGTAAACAATGCCGCCTTTACAACCCCATTGAGTTGGGGAAGCTCTATCTTCATCAGTGGGAATTTGATTGGCCTTTATGATGCGCAGAAGGTTTTACCTGCCAAATTATGCAGTGGAGTTTCAATTAGCCCAAGAGCTTTTGCAAGTCGGAATTCGGTGAAGAAATTGAGGAGGGACGGAGAAGCACGGAAAAGAGTAGCAGATAAGAGCACTGCTTCTGAAGATGATTATGTTCAAATTGACAAGAAGGTGGACCCTTCTGATAATTTAGCTGCAGAGGAATTGGTTGTATTCCCTCCCAGAGGTGCTGTGCTTCAGGCTTGCACTGTTACTTCTGGGTTGATAGCGGCATTGGGTATAATAATTCGACAGGCATCTCATGTTGCATCAATTGAAGGATTGCCAGTCTTTGACTGCTCGTTGGACATATCATTTGATTTTGAGGTGTGGTATCTTGAGTTGATTACAGGATTAGTTATTGTGATATCATTATGCCGATATCTCTTGTTGAAGACATGGCCAGATTTTGCAGAATCTAGCGAAGCTGCCAATCAGCAGGTCCTTAGTTCACTTCAACCTTTAGATTACATAATCGTCGCGTTTTTGCCTGGGATTAGCGAGGAACTTCTTTTCCGGGGTGCACTGCTACCACTTTTTGGATCTAATTGGAGGAGTGCATTGGCCGTCGCCATCATTTTTGGTGTTCTACACCTGGGGAGTGGCCGAAAGTATTCCTTTGCCATTTGGGCAACTTTTGTTGGGCTTGTGTATGGTTATGCAACCATTGTCTCCTCCAGCCTTATCGTGCCAATGGCTGCTCATGCAGTGAACAATTTGGTGGGAGGGATATCATGGCGCTACCGATCAGGTTCACCGCGGCGGCTATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Abi

Protein Analysis

308

Amino Acids

33.32

Weight (kDa)

8.64

Isoelectric Point (pI)

35.79

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010085)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G26085 AT3G26085 AT3G26085 AT3G26085
fragaria_vesca	FvH4_4g24960 FvH4_4g24960
malus_domestica	MD13G1107700.v1.1 MD16G1107600.v1.1
prunus_persica	Prupe.1G238700_v2.0.a1 Prupe.1G238700_v2.0.a1 Prupe.1G238700_v2.0.a1 Prupe.1G238700_v2.0.a1 Prupe.1G238700_v2.0.a1
pyrus_communis	pycom16g09180
rosa_chinensis	RchiOBHm_Chr4g0432001
rosa_multiflora	Rmu_sc0040810.1_g000001
rosa_roxburghii	Rroxscaffold_5G00373550
rosa_samantha	Rh4BG318600 Rh4CG333900 Rh4DG313500
rosa_wichuraiana	Rw4G027080

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	120
Acc36I	ACCTGC	2 cut(s)	142, 583
AccB7I	CCANNNNNTGG	1 cut(s)	692
AccI	GTMKAC	1 cut(s)	32
AccII	CGCG	2 cut(s)	635, 913
AciI	CCGC	6 cut(s)	28, 48, 383, 911, 913, 916
AclWI	GGATC	1 cut(s)	703
AcoI	YGGCCR	3 cut(s)	554, 717, 757
AcsI	RAATTY	2 cut(s)	97, 187
AcuI	CTGAAG	2 cut(s)	276, 335
AfiI	CCNNNNNNNGG	2 cut(s)	338, 692
AgsI	TTSAA	5 cut(s)	159, 272, 431, 547, 611
AjnI	CCWGG	2 cut(s)	643, 747
AloI	GAACNNNNNNTCC	2 cut(s)	651, 683
AluBI	AGCT	4 cut(s)	78, 173, 308, 581
AluI	AGCT	4 cut(s)	78, 173, 308, 581
Alw21I	GWGCWC	2 cut(s)	248, 679
Alw26I	GTCTC	1 cut(s)	829
Alw44I	GTGCAC	1 cut(s)	675
AlwI	GGATC	1 cut(s)	703
AoxI	GGCC	4 cut(s)	106, 554, 717, 757
ApaLI	GTGCAC	1 cut(s)	675
ApeKI	GCWGC	3 cut(s)	308, 581, 851
ApoI	RAATTY	2 cut(s)	97, 187
ArsI	GACNNNNNNTTYG	2 cut(s)	452, 484
Asp700I	GAANNNNTTC	1 cut(s)	766
AspLEI	GCGC	2 cut(s)	121, 894
AspS9I	GGNCC	2 cut(s)	289, 595
AsuC2I	CCSGG	1 cut(s)	671
AsuHPI	GGTGA	2 cut(s)	205, 900
AvaII	GGWCC	2 cut(s)	289, 595
BaeGI	GKGCMC	1 cut(s)	679
BalI	TGGCCA	1 cut(s)	556
BbsI	GAAGAC	1 cut(s)	554
Bbv12I	GWGCWC	2 cut(s)	248, 679
BbvI	GCAGC	3 cut(s)	295, 568, 838
BccI	CCATC	1 cut(s)	734
BceAI	ACGGC	1 cut(s)	704
BciT130I	CCWGG	2 cut(s)	645, 749
BcnI	CCSGG	1 cut(s)	671
BcoDI	GTCTC	1 cut(s)	829
BfaI	CTAG	1 cut(s)	573
BfmI	CTRYAG	2 cut(s)	33, 309
BfoI	RGCGCY	1 cut(s)	895
BfuAI	ACCTGC	2 cut(s)	142, 583
BglI	GCCNNNNNGGC	1 cut(s)	782
BisI	GCNGC	7 cut(s)	48, 309, 384, 582, 852, 914, 917
BlsI	GCNGC	7 cut(s)	49, 310, 385, 583, 853, 915, 918
Bme1390I	CCNGG	3 cut(s)	645, 671, 749
Bme18I	GGWCC	2 cut(s)	289, 595
BmgT120I	GGNCC	2 cut(s)	289, 595
BmiI	GGNNCC	1 cut(s)	291
BmrFI	CCNGG	3 cut(s)	645, 671, 749
BmsI	GCATC	3 cut(s)	106, 419, 431
BpiI	GAAGAC	1 cut(s)	554
BpmI	CTGGAG	1 cut(s)	814
BpuEI	CTTGAG	1 cut(s)	512
BpuMI	CCSGG	1 cut(s)	671
BsaJI	CCNNGG	4 cut(s)	644, 670, 748, 911
Bsc4I	CCNNNNNNNGG	2 cut(s)	338, 692
Bse1I	ACTGG	1 cut(s)	440
BseBI	CCWGG	2 cut(s)	645, 749
BseDI	CCNNGG	4 cut(s)	644, 670, 748, 911
BseLI	CCNNNNNNNGG	2 cut(s)	338, 692
BseNI	ACTGG	1 cut(s)	440
BseRI	GAGGAG	3 cut(s)	220, 721, 817
BseSI	GKGCMC	1 cut(s)	679
BseXI	GCAGC	3 cut(s)	295, 568, 838
Bsh1236I	CGCG	2 cut(s)	635, 913
BshFI	GGCC	4 cut(s)	108, 556, 719, 759
BsiHKAI	GWGCWC	2 cut(s)	248, 679
BsiSI	CCGG	1 cut(s)	670
BslFI	GGGAC	1 cut(s)	224
BslI	CCNNNNNNNGG	2 cut(s)	338, 692
BsmAI	GTCTC	1 cut(s)	829
BsmFI	GGGAC	1 cut(s)	224
BsnI	GGCC	4 cut(s)	108, 556, 719, 759
Bsp1286I	GDGCHC	2 cut(s)	248, 679
Bsp143I	GATC	2 cut(s)	695, 899
BspACI	CCGC	6 cut(s)	28, 48, 383, 911, 913, 916
BspANI	GGCC	4 cut(s)	108, 556, 719, 759
BspFNI	CGCG	2 cut(s)	635, 913
BspLI	GGNNCC	1 cut(s)	291
BspMAI	CTGCAG	1 cut(s)	313
BspMI	ACCTGC	2 cut(s)	142, 583
BspPI	GGATC	1 cut(s)	703
BsrI	ACTGG	1 cut(s)	440
BssECI	CCNNGG	4 cut(s)	644, 670, 748, 911
BssMI	GATC	2 cut(s)	695, 899
Bst2UI	CCWGG	2 cut(s)	645, 749
Bst4CI	ACNGT	2 cut(s)	37, 364
BstC8I	GCNNGC	2 cut(s)	12, 358
BstDEI	CTNAG	1 cut(s)	599
BstDSI	CCRYGG	1 cut(s)	911
BstENI	CCTNNNNNAGG	1 cut(s)	336
BstFNI	CGCG	2 cut(s)	635, 913
BstH2I	RGCGCY	1 cut(s)	895
BstHHI	GCGC	2 cut(s)	121, 894
BstKTI	GATC	2 cut(s)	698, 902
BstMAI	GTCTC	1 cut(s)	829
BstMBI	GATC	2 cut(s)	695, 899
BstMWI	GCNNNNNNNGC	2 cut(s)	782, 857
BstNI	CCWGG	2 cut(s)	645, 749
BstSCI	CCNGG	3 cut(s)	643, 669, 747
BstSFI	CTRYAG	2 cut(s)	33, 309
BstSLI	GKGCMC	1 cut(s)	679
BstUI	CGCG	2 cut(s)	635, 913
BstV1I	GCAGC	3 cut(s)	295, 568, 838
BstV2I	GAAGAC	1 cut(s)	554
BstX2I	RGATCY	1 cut(s)	695
BstXI	CCANNNNNNTGG	1 cut(s)	69
BstYI	RGATCY	1 cut(s)	695
BsuRI	GGCC	4 cut(s)	108, 556, 719, 759
BtgI	CCRYGG	1 cut(s)	911
BtsI	GCAGTG	4 cut(s)	154, 246, 677, 867
BtsIMutI	CAGTG	6 cut(s)	97, 154, 246, 360, 677, 867
BveI	ACCTGC	2 cut(s)	142, 583
Cac8I	GCNNGC	2 cut(s)	12, 358
CfoI	GCGC	2 cut(s)	121, 894
Cfr13I	GGNCC	2 cut(s)	289, 595
Cfr42I	CCGCGG	1 cut(s)	914
CviAII	CATG	4 cut(s)	416, 552, 857, 888
DdeI	CTNAG	1 cut(s)	599
DpnI	GATC	2 cut(s)	697, 901
DpnII	GATC	2 cut(s)	695, 899
EaeI	YGGCCR	3 cut(s)	554, 717, 757
Eco32I	GATATC	3 cut(s)	522, 536, 885
Eco47I	GGWCC	2 cut(s)	289, 595
Eco57I	CTGAAG	2 cut(s)	276, 335
EcoNI	CCTNNNNNAGG	1 cut(s)	336
EcoO109I	RGGNCCY	1 cut(s)	595
EcoRI	GAATTC	1 cut(s)	187
EcoRII	CCWGG	2 cut(s)	643, 747
EcoRV	GATATC	3 cut(s)	522, 536, 885
FaeI	CATG	4 cut(s)	419, 555, 860, 891
FalI	AAGNNNNNCTT	2 cut(s)	755, 787
FaqI	GGGAC	1 cut(s)	224
FatI	CATG	4 cut(s)	415, 551, 856, 887
FblI	GTMKAC	1 cut(s)	32
Fnu4HI	GCNGC	7 cut(s)	48, 309, 384, 582, 852, 914, 917
Fsp4HI	GCNGC	7 cut(s)	48, 309, 384, 582, 852, 914, 917
FspBI	CTAG	1 cut(s)	573
FspI	TGCGCA	1 cut(s)	120
GlaI	GCGC	2 cut(s)	120, 893
GluI	GCNGC	7 cut(s)	48, 309, 384, 582, 852, 914, 917
GsuI	CTGGAG	1 cut(s)	814
HaeII	RGCGCY	1 cut(s)	895
HaeIII	GGCC	4 cut(s)	108, 556, 719, 759
HapII	CCGG	1 cut(s)	670
HhaI	GCGC	2 cut(s)	121, 894
Hin1II	CATG	4 cut(s)	419, 555, 860, 891
Hin6I	GCGC	2 cut(s)	119, 892
HinP1I	GCGC	2 cut(s)	119, 892
HinfI	GANTC	1 cut(s)	569
HpaII	CCGG	1 cut(s)	670
HphI	GGTGA	2 cut(s)	205, 900
Hpy166II	GTNNAC	8 cut(s)	19, 33, 40, 289, 605, 677, 865, 908
Hpy188I	TCNGA	3 cut(s)	186, 256, 298
Hpy188III	TCNNGA	1 cut(s)	491
Hpy8I	GTNNAC	8 cut(s)	19, 33, 40, 289, 605, 677, 865, 908
Hpy99I	CGWCG	2 cut(s)	635, 725
HpyAV	CCTTC	4 cut(s)	118, 277, 303, 425
HpyCH4III	ACNGT	2 cut(s)	37, 364
HpyF10VI	GCNNNNNNNGC	2 cut(s)	782, 857
HpyF3I	CTNAG	1 cut(s)	599
Hsp92II	CATG	4 cut(s)	419, 555, 860, 891
HspAI	GCGC	2 cut(s)	119, 892
KspI	CCGCGG	1 cut(s)	914
Kzo9I	GATC	2 cut(s)	695, 899
Lsp1109I	GCAGC	3 cut(s)	295, 568, 838
LweI	GCATC	3 cut(s)	106, 419, 431
MaeI	CTAG	1 cut(s)	573
MaeIII	GTNAC	1 cut(s)	364
MalI	GATC	2 cut(s)	697, 901
MboI	GATC	2 cut(s)	695, 899
MboII	GAAGA	4 cut(s)	76, 208, 269, 559
MfeI	CAATTG	1 cut(s)	426
MflI	RGATCY	1 cut(s)	695
MhlI	GDGCHC	2 cut(s)	248, 679
MlsI	TGGCCA	1 cut(s)	556
MluNI	TGGCCA	1 cut(s)	556
MmeI	TCCRAC	2 cut(s)	164, 438
Mox20I	TGGCCA	1 cut(s)	556
MroXI	GAANNNNTTC	1 cut(s)	766
MscI	TGGCCA	1 cut(s)	556
Msp20I	TGGCCA	1 cut(s)	556
MspA1I	CMGCKG	1 cut(s)	913
MspI	CCGG	1 cut(s)	670
MspR9I	CCNGG	3 cut(s)	645, 671, 749
MunI	CAATTG	1 cut(s)	426
MvaI	CCWGG	2 cut(s)	645, 749
MvnI	CGCG	2 cut(s)	635, 913
MwoI	GCNNNNNNNGC	2 cut(s)	782, 857
NciI	CCSGG	1 cut(s)	671
NdeII	GATC	2 cut(s)	695, 899
NlaIII	CATG	4 cut(s)	419, 555, 860, 891
NlaIV	GGNNCC	1 cut(s)	291
NsbI	TGCGCA	1 cut(s)	120
PdmI	GAANNNNTTC	1 cut(s)	766
PfeI	GAWTC	1 cut(s)	569
PflMI	CCANNNNNTGG	1 cut(s)	692
PkrI	GCNGC	7 cut(s)	49, 310, 385, 583, 853, 915, 918
PpuMI	RGGWCCY	1 cut(s)	595
Psp5II	RGGWCCY	1 cut(s)	595
Psp6I	CCWGG	2 cut(s)	643, 747
PspGI	CCWGG	2 cut(s)	643, 747
PspN4I	GGNNCC	1 cut(s)	291
PspPI	GGNCC	2 cut(s)	289, 595
PspPPI	RGGWCCY	1 cut(s)	595
PstI	CTGCAG	1 cut(s)	313
PsuI	RGATCY	1 cut(s)	695
SacII	CCGCGG	1 cut(s)	914
SatI	GCNGC	7 cut(s)	48, 309, 384, 582, 852, 914, 917
Sau3AI	GATC	2 cut(s)	695, 899
Sau96I	GGNCC	2 cut(s)	289, 595
ScrFI	CCNGG	3 cut(s)	645, 671, 749
SduI	GDGCHC	2 cut(s)	248, 679
SfaNI	GCATC	3 cut(s)	106, 419, 431
SfcI	CTRYAG	2 cut(s)	33, 309
Sfr303I	CCGCGG	1 cut(s)	914
SgrBI	CCGCGG	1 cut(s)	914
SinI	GGWCC	2 cut(s)	289, 595
SmlI	CTYRAG	1 cut(s)	491
SmoI	CTYRAG	1 cut(s)	491
SsiI	CCGC	6 cut(s)	28, 48, 383, 911, 913, 916
SspMI	CTAG	1 cut(s)	573
StyD4I	CCNGG	3 cut(s)	643, 669, 747
TaaI	ACNGT	2 cut(s)	37, 364
TaqI	TCGA	1 cut(s)	403
TauI	GCSGC	4 cut(s)	50, 386, 916, 919
TfiI	GAWTC	1 cut(s)	569
TscAI	CASTG	6 cut(s)	97, 154, 253, 367, 684, 867
TseI	GCWGC	3 cut(s)	308, 581, 851
TspDTI	ATGAA	1 cut(s)	76
TspGWI	ACGGA	2 cut(s)	228, 238
TspRI	CASTG	6 cut(s)	97, 154, 253, 367, 684, 867
Van91I	CCANNNNNTGG	1 cut(s)	692
VneI	GTGCAC	1 cut(s)	675
VpaK11BI	GGWCC	2 cut(s)	289, 595
XagI	CCTNNNNNAGG	1 cut(s)	336
XapI	RAATTY	2 cut(s)	97, 187
XmiI	GTMKAC	1 cut(s)	32
XmnI	GAANNNNTTC	1 cut(s)	766
XspI	CTAG	1 cut(s)	573

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.