Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0009613

Physical Location & Seq

Genomic Coordinates Reverse (-)

9797984 .. 9801209

Gene Structure 3226 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT3G26670.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1326 bp

ATGGGAGAGTGGGTCATCGGAGCTTTCATCAACATTTTTGGAAGTGTTGCTATTAATTTTGGCACAAACCTTCTCAAATTGGGACATAATGAGAGAGAAAGGTTAGCCCTACAAGATGGCGGAGGAAAGATGCCATTGAAGCCAATTATACATAATCAGACTTGGAGAGTTGGGATCCTTGTCTTTCTTCTTGGGAATTGCCTCAATTTCATTTCGTTTGGTTATGCTGCTCAGTCCCTTCTAGCAGCTCTTGGATCCATTCAATTTGTATCCAACATAGCATTTGCTTATGTTGTATTGAACAAAATGGTTACTGTCAAAGTACTCGTTGCTACAGCCTTTATAGTTCTTGGAAACGTTTTCCTTGTAGCTTTTGGTAATCACCAGTCACCAGTTTTCACACCCGAACAGTTGGCAGAGAAATATAGCAATGTAACATTCTTGGTCTACTGTGGTATTTTGATTTTAATAGTAGCCGTGCACCATTTCCTCTATAGGAAGGGAGAAGTTTTGATATCTACACCTGGACAAGAAATTAGCTCTTATTGGAAAATGCTGCTTCCTTTCTCATATGCAGTGGTCTCGGGTGCTATAGGATCATGTTCAGTTTTATTTGCCAAGTCACTCTCGAACTTGCTGAGATTGGCCATGTCTAGTAGCTATCAACTGCACAGCTGGTTCACATACTCTATGCTTCTTTTATTTCTTAGTACAGCCGGATTCTGGATGACAAGATTGAATGAAGGATTGTCTCTATATGATGCAATTCTCATAGTTCCAATGTTTCAGATTGCTTGGACTTTCTTCTCCATCTGTACAGGATGCATTTACTTTCAAGAGTTTCAGGTTTTCGATGCGCTAAGAACAACAATGTTCATATTAGGAATGATGTGTGTATTCATAGGCATTTCTTTACTAGCACCTGATGATACAAGAGGCAATGAGACAAAAGATAATTCATCATCTCTTGACTCCATCGTGTCCTCGAGTGTGCCAACTGAGGAGGACAGGTTGATACCACAATCATCTGAAGATGGACACAGCAAAGACACAAGAGTAGTTGTACAAGGAATGTATATGAAAGCAGCTGATTTAATTGCCAAGACAAAGACTGCTTGTTTAGCAGCACTAGGATTTGGTGAAGACTCTATAAATGCATCTGCGATTCTAGTGATGCCAATGGTATCTTCGAAGATTACAGGGTTTAGAGGAAACGGACTCGAACGGGCAAAGATTTTGTCCATGAGAGGGTCAGGATGGAGCAAACTAGCCATGGAAGAAGAAGGAACAAGAATGCTTGAAAAGACCATCTCTTCAAAGGCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0005769 GO:0005886 GO:0006810 GO:0006811 GO:0006812 GO:0008150 GO:0012505 GO:0015693 GO:0016020 GO:0030001 GO:0031410 GO:0031982 GO:0043226 GO:0043227 GO:0043229 GO:0044424 GO:0044444 GO:0044464 GO:0051179 GO:0051234 GO:0070838 GO:0071944 GO:0072511 GO:0097708

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Mg_trans_NIPA

Protein Analysis

441

Amino Acids

48.41

Weight (kDa)

8.09

Isoelectric Point (pI)

38.14

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Mg_trans_NIPA	PF05653	5 - 307	4.2e-22	Magnesium transporter NIPA

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009613)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G26670 AT3G26670 AT3G26670 AT3G26670
fragaria_vesca	FvH4_6g54450
malus_domestica	MD09G1001000.v1.1 MD17G1004100.v1.1
prunus_persica	Prupe.3G315100_v2.0.a1 Prupe.3G315100_v2.0.a1 Prupe.3G315100_v2.0.a1 Prupe.3G315100_v2.0.a1
pyrus_communis	pycom17g00080
rosa_chinensis	RchiOBHm_Chr2g0176711
rosa_laevigata	RLG00000022438
rosa_multiflora	Rmu_ssc0000468.1_g000006
rosa_roxburghii	Rroxscaffold_2G00076230
rosa_rugosa	Rorug02G0597800 Rorug02G0598000
rosa_samantha	Rh2AG675200 Rh2BG686400 Rh2DG700500
rosa_wichuraiana	Rw2G055420

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	447
AciI	CCGC	1 cut(s)	120
AclI	AACGTT	1 cut(s)	357
AclWI	GGATC	5 cut(s)	169, 182, 249, 262, 604
AcoI	YGGCCR	1 cut(s)	645
AcuI	CTGAAG	1 cut(s)	1050
AfaI	GTAC	4 cut(s)	324, 712, 817, 1065
AfiI	CCNNNNNNNGG	2 cut(s)	723, 1248
AgsI	TTSAA	7 cut(s)	139, 263, 301, 739, 836, 1301, 1317
AjnI	CCWGG	1 cut(s)	523
AjuI	GAANNNNNNNTTGG	2 cut(s)	1171, 1203
AluBI	AGCT	7 cut(s)	23, 248, 371, 540, 660, 675, 1088
AluI	AGCT	7 cut(s)	23, 248, 371, 540, 660, 675, 1088
Alw21I	GWGCWC	1 cut(s)	483
Alw26I	GTCTC	3 cut(s)	586, 756, 938
Alw44I	GTGCAC	1 cut(s)	479
AlwI	GGATC	5 cut(s)	169, 182, 249, 262, 604
Ama87I	CYCGRG	2 cut(s)	583, 985
AoxI	GGCC	1 cut(s)	645
ApaLI	GTGCAC	1 cut(s)	479
ApeKI	GCWGC	5 cut(s)	227, 245, 556, 1085, 1124
ArsI	GACNNNNNNTTYG	2 cut(s)	1223, 1255
AseI	ATTAAT	1 cut(s)	54
AspLEI	GCGC	1 cut(s)	859
AsuHPI	GGTGA	3 cut(s)	374, 381, 1151
AsuII	TTCGAA	1 cut(s)	1190
AvaI	CYCGRG	2 cut(s)	583, 985
BaeGI	GKGCMC	1 cut(s)	483
BalI	TGGCCA	1 cut(s)	647
BamHI	GGATCC	2 cut(s)	174, 254
BbsI	GAAGAC	1 cut(s)	1149
Bbv12I	GWGCWC	1 cut(s)	483
BbvI	GCAGC	5 cut(s)	214, 257, 543, 1097, 1136
BccI	CCATC	6 cut(s)	110, 818, 983, 1028, 1251, 1316
BceAI	ACGGC	1 cut(s)	461
BcgI	CGANNNNNNTGC	2 cut(s)	564, 598
BciT130I	CCWGG	1 cut(s)	525
BciVI	GTATCC	1 cut(s)	280
BcoDI	GTCTC	3 cut(s)	586, 756, 938
BfaI	CTAG	6 cut(s)	242, 654, 917, 1130, 1169, 1268
BfmI	CTRYAG	3 cut(s)	333, 493, 591
BfuI	GTATCC	1 cut(s)	280
BisI	GCNGC	5 cut(s)	228, 246, 557, 1086, 1125
BlsI	GCNGC	5 cut(s)	229, 247, 558, 1087, 1126
BmcAI	AGTACT	1 cut(s)	324
Bme1390I	CCNGG	1 cut(s)	525
BmeT110I	CYCGRG	2 cut(s)	583, 985
BmiI	GGNNCC	2 cut(s)	176, 256
BmrFI	CCNGG	1 cut(s)	525
BmsI	GCATC	6 cut(s)	120, 751, 812, 844, 1164, 1166
BpiI	GAAGAC	1 cut(s)	1149
Bpu14I	TTCGAA	1 cut(s)	1190
BsaI	GGTCTC	1 cut(s)	586
BsaJI	CCNNGG	1 cut(s)	1272
BsaXI	ACNNNNNCTCC	3 cut(s)	27, 995, 1025
Bsc4I	CCNNNNNNNGG	2 cut(s)	723, 1248
Bse1I	ACTGG	2 cut(s)	385, 392
Bse3DI	GCAATG	2 cut(s)	436, 946
BseBI	CCWGG	1 cut(s)	525
BseDI	CCNNGG	1 cut(s)	1272
BseGI	GGATG	3 cut(s)	732, 827, 1262
BseLI	CCNNNNNNNGG	2 cut(s)	723, 1248
BseMI	GCAATG	2 cut(s)	436, 946
BseMII	CTCAG	3 cut(s)	245, 629, 990
BseNI	ACTGG	2 cut(s)	385, 392
BseRI	GAGGAG	1 cut(s)	1016
BseSI	GKGCMC	1 cut(s)	483
BseXI	GCAGC	5 cut(s)	214, 257, 543, 1097, 1136
BsgI	GTGCAG	1 cut(s)	653
BshFI	GGCC	1 cut(s)	647
BsiHKAI	GWGCWC	1 cut(s)	483
BsiHKCI	CYCGRG	2 cut(s)	583, 985
BsiSI	CCGG	1 cut(s)	717
BslFI	GGGAC	2 cut(s)	96, 220
BslI	CCNNNNNNNGG	2 cut(s)	723, 1248
BsmAI	GTCTC	3 cut(s)	586, 756, 938
BsmFI	GGGAC	2 cut(s)	96, 220
BsmI	GAATGC	1 cut(s)	1299
BsnI	GGCC	1 cut(s)	647
Bso31I	GGTCTC	1 cut(s)	586
BsoBI	CYCGRG	2 cut(s)	583, 985
Bsp119I	TTCGAA	1 cut(s)	1190
Bsp1286I	GDGCHC	1 cut(s)	483
Bsp1407I	TGTACA	2 cut(s)	815, 1063
Bsp143I	GATC	3 cut(s)	174, 254, 596
Bsp19I	CCATGG	1 cut(s)	1272
BspACI	CCGC	1 cut(s)	120
BspANI	GGCC	1 cut(s)	647
BspCNI	CTCAG	3 cut(s)	244, 630, 991
BspLI	GGNNCC	2 cut(s)	176, 256
BspPI	GGATC	5 cut(s)	169, 182, 249, 262, 604
BspT104I	TTCGAA	1 cut(s)	1190
BspTNI	GGTCTC	1 cut(s)	586
BsrDI	GCAATG	2 cut(s)	436, 946
BsrGI	TGTACA	2 cut(s)	815, 1063
BsrI	ACTGG	2 cut(s)	385, 392
BssECI	CCNNGG	1 cut(s)	1272
BssMI	GATC	3 cut(s)	174, 254, 596
BssT1I	CCWWGG	1 cut(s)	1272
Bst2UI	CCWGG	1 cut(s)	525
Bst4CI	ACNGT	3 cut(s)	316, 411, 452
Bst6I	CTCTTC	1 cut(s)	1318
BstAUI	TGTACA	2 cut(s)	815, 1063
BstBI	TTCGAA	1 cut(s)	1190
BstDEI	CTNAG	5 cut(s)	231, 638, 707, 860, 999
BstDSI	CCRYGG	1 cut(s)	1272
BstF5I	GGATG	3 cut(s)	732, 827, 1262
BstHHI	GCGC	1 cut(s)	859
BstKTI	GATC	3 cut(s)	177, 257, 599
BstMAI	GTCTC	3 cut(s)	586, 756, 938
BstMBI	GATC	3 cut(s)	174, 254, 596
BstMWI	GCNNNNNNNGC	2 cut(s)	139, 1121
BstNI	CCWGG	1 cut(s)	525
BstSCI	CCNGG	1 cut(s)	523
BstSFI	CTRYAG	3 cut(s)	333, 493, 591
BstSLI	GKGCMC	1 cut(s)	483
BstV1I	GCAGC	5 cut(s)	214, 257, 543, 1097, 1136
BstV2I	GAAGAC	1 cut(s)	1149
BstX2I	RGATCY	2 cut(s)	174, 254
BstYI	RGATCY	2 cut(s)	174, 254
BsuI	GTATCC	1 cut(s)	280
BsuRI	GGCC	1 cut(s)	647
BtgI	CCRYGG	1 cut(s)	1272
BtsCI	GGATG	3 cut(s)	732, 827, 1262
BtsI	GCAGTG	1 cut(s)	582
BtsIMutI	CAGTG	1 cut(s)	582
CfoI	GCGC	1 cut(s)	859
Csp6I	GTAC	4 cut(s)	323, 711, 816, 1064
CviAII	CATG	4 cut(s)	600, 649, 1243, 1273
CviQI	GTAC	4 cut(s)	323, 711, 816, 1064
DdeI	CTNAG	5 cut(s)	231, 638, 707, 860, 999
DpnI	GATC	3 cut(s)	176, 256, 598
DpnII	GATC	3 cut(s)	174, 254, 596
EaeI	YGGCCR	1 cut(s)	645
Eam1104I	CTCTTC	1 cut(s)	1318
EarI	CTCTTC	1 cut(s)	1318
EciI	GGCGGA	1 cut(s)	135
Eco130I	CCWWGG	1 cut(s)	1272
Eco31I	GGTCTC	1 cut(s)	586
Eco32I	GATATC	1 cut(s)	516
Eco57I	CTGAAG	1 cut(s)	1050
Eco88I	CYCGRG	2 cut(s)	583, 985
EcoRII	CCWGG	1 cut(s)	523
EcoRV	GATATC	1 cut(s)	516
EcoT14I	CCWWGG	1 cut(s)	1272
EcoT22I	ATGCAT	2 cut(s)	827, 1159
ErhI	CCWWGG	1 cut(s)	1272
FaeI	CATG	4 cut(s)	603, 652, 1246, 1276
FaqI	GGGAC	2 cut(s)	96, 220
FatI	CATG	4 cut(s)	599, 648, 1242, 1272
FauNDI	CATATG	1 cut(s)	571
FblI	GTMKAC	1 cut(s)	447
Fnu4HI	GCNGC	5 cut(s)	228, 246, 557, 1086, 1125
FokI	GGATG	3 cut(s)	739, 834, 1269
Fsp4HI	GCNGC	5 cut(s)	228, 246, 557, 1086, 1125
FspBI	CTAG	6 cut(s)	242, 654, 917, 1130, 1169, 1268
GlaI	GCGC	1 cut(s)	858
GluI	GCNGC	5 cut(s)	228, 246, 557, 1086, 1125
HaeIII	GGCC	1 cut(s)	647
HapII	CCGG	1 cut(s)	717
HhaI	GCGC	1 cut(s)	859
Hin1II	CATG	4 cut(s)	603, 652, 1246, 1276
Hin6I	GCGC	1 cut(s)	857
HinP1I	GCGC	1 cut(s)	857
HinfI	GANTC	5 cut(s)	720, 971, 1145, 1165, 1218
HpaII	CCGG	1 cut(s)	717
HphI	GGTGA	3 cut(s)	374, 381, 1151
Hpy166II	GTNNAC	3 cut(s)	448, 481, 681
Hpy188I	TCNGA	4 cut(s)	20, 159, 789, 1030
Hpy188III	TCNNGA	5 cut(s)	628, 724, 836, 968, 1254
Hpy8I	GTNNAC	3 cut(s)	448, 481, 681
HpyAV	CCTTC	5 cut(s)	80, 248, 493, 737, 1277
HpyCH4III	ACNGT	3 cut(s)	316, 411, 452
HpyCH4IV	ACGT	1 cut(s)	357
HpyCH4V	TGCA	6 cut(s)	481, 575, 670, 764, 825, 1157
HpyF10VI	GCNNNNNNNGC	2 cut(s)	139, 1121
HpyF3I	CTNAG	5 cut(s)	231, 638, 707, 860, 999
HpySE526I	ACGT	1 cut(s)	357
Hsp92II	CATG	4 cut(s)	603, 652, 1246, 1276
HspAI	GCGC	1 cut(s)	857
Kzo9I	GATC	3 cut(s)	174, 254, 596
LmnI	GCTCC	2 cut(s)	20, 1260
Lsp1109I	GCAGC	5 cut(s)	214, 257, 543, 1097, 1136
LweI	GCATC	6 cut(s)	120, 751, 812, 844, 1164, 1166
MaeI	CTAG	6 cut(s)	242, 654, 917, 1130, 1169, 1268
MaeII	ACGT	1 cut(s)	357
MaeIII	GTNAC	4 cut(s)	310, 387, 433, 621
MalI	GATC	3 cut(s)	176, 256, 598
MboI	GATC	3 cut(s)	174, 254, 596
MboII	GAAGA	9 cut(s)	179, 796, 1043, 1154, 1179, 1204, 1289, 1292, 1305
MflI	RGATCY	2 cut(s)	174, 254
MhlI	GDGCHC	1 cut(s)	483
MlsI	TGGCCA	1 cut(s)	647
MluNI	TGGCCA	1 cut(s)	647
MlyI	GAGTC	3 cut(s)	965, 1139, 1212
MmeI	TCCRAC	1 cut(s)	297
MnlI	CCTC	9 cut(s)	116, 212, 500, 929, 994, 994, 997, 1202, 1241
Mox20I	TGGCCA	1 cut(s)	647
Mph1103I	ATGCAT	2 cut(s)	827, 1159
MscI	TGGCCA	1 cut(s)	647
MseI	TTAA	4 cut(s)	54, 467, 1094, 1324
Msp20I	TGGCCA	1 cut(s)	647
MspA1I	CMGCKG	2 cut(s)	675, 1088
MspI	CCGG	1 cut(s)	717
MspR9I	CCNGG	1 cut(s)	525
Mva1269I	GAATGC	1 cut(s)	1299
MvaI	CCWGG	1 cut(s)	525
MwoI	GCNNNNNNNGC	2 cut(s)	139, 1121
NcoI	CCATGG	1 cut(s)	1272
NdeI	CATATG	1 cut(s)	571
NdeII	GATC	3 cut(s)	174, 254, 596
NlaIII	CATG	4 cut(s)	603, 652, 1246, 1276
NlaIV	GGNNCC	2 cut(s)	176, 256
NmuCI	GTSAC	2 cut(s)	387, 621
NsiI	ATGCAT	2 cut(s)	827, 1159
NspV	TTCGAA	1 cut(s)	1190
PaeR7I	CTCGAG	1 cut(s)	985
PctI	GAATGC	1 cut(s)	1299
PfeI	GAWTC	2 cut(s)	720, 1165
PkrI	GCNGC	5 cut(s)	229, 247, 558, 1087, 1126
PleI	GAGTC	3 cut(s)	965, 1139, 1212
PpsI	GAGTC	3 cut(s)	965, 1139, 1212
PshBI	ATTAAT	1 cut(s)	54
Psp1406I	AACGTT	1 cut(s)	357
Psp6I	CCWGG	1 cut(s)	523
PspGI	CCWGG	1 cut(s)	523
PspN4I	GGNNCC	2 cut(s)	176, 256
PspXI	VCTCGAGB	1 cut(s)	985
PsuI	RGATCY	2 cut(s)	174, 254
PvuII	CAGCTG	2 cut(s)	675, 1088
RsaI	GTAC	4 cut(s)	324, 712, 817, 1065
RsaNI	GTAC	4 cut(s)	323, 711, 816, 1064
SaqAI	TTAA	4 cut(s)	54, 467, 1094, 1324
SatI	GCNGC	5 cut(s)	228, 246, 557, 1086, 1125
Sau3AI	GATC	3 cut(s)	174, 254, 596
ScaI	AGTACT	1 cut(s)	324
SchI	GAGTC	3 cut(s)	965, 1139, 1212
ScrFI	CCNGG	1 cut(s)	525
SduI	GDGCHC	1 cut(s)	483
SfaNI	GCATC	6 cut(s)	120, 751, 812, 844, 1164, 1166
SfcI	CTRYAG	3 cut(s)	333, 493, 591
Sfr274I	CTCGAG	1 cut(s)	985
SfuI	TTCGAA	1 cut(s)	1190
SlaI	CTCGAG	1 cut(s)	985
SmlI	CTYRAG	1 cut(s)	985
SmoI	CTYRAG	1 cut(s)	985
SsiI	CCGC	1 cut(s)	120
SspMI	CTAG	6 cut(s)	242, 654, 917, 1130, 1169, 1268
StyD4I	CCNGG	1 cut(s)	523
StyI	CCWWGG	1 cut(s)	1272
TaaI	ACNGT	3 cut(s)	316, 411, 452
TaiI	ACGT	1 cut(s)	360
TaqI	TCGA	5 cut(s)	629, 852, 986, 1190, 1221
TatI	WGTACW	4 cut(s)	322, 710, 815, 1063
TfiI	GAWTC	2 cut(s)	720, 1165
Tru1I	TTAA	4 cut(s)	54, 467, 1094, 1324
Tru9I	TTAA	4 cut(s)	54, 467, 1094, 1324
TscAI	CASTG	1 cut(s)	582
TseFI	GTSAC	2 cut(s)	387, 621
TseI	GCWGC	5 cut(s)	227, 245, 556, 1085, 1124
Tsp45I	GTSAC	2 cut(s)	387, 621
TspDTI	ATGAA	7 cut(s)	16, 199, 756, 865, 889, 948, 1094
TspGWI	ACGGA	1 cut(s)	1230
TspRI	CASTG	1 cut(s)	582
VneI	GTGCAC	1 cut(s)	479
VspI	ATTAAT	1 cut(s)	54
XhoI	CTCGAG	1 cut(s)	985
XmiI	GTMKAC	1 cut(s)	447
XspI	CTAG	6 cut(s)	242, 654, 917, 1130, 1169, 1268
ZrmI	AGTACT	1 cut(s)	324
Zsp2I	ATGCAT	2 cut(s)	827, 1159

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.