Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb6

Orthogroup ID

OG0009613

Physical Location & Seq

Genomic Coordinates Forward (+)

39745103 .. 39749907

Gene Structure 4805 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_6g54450.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1332 bp

ATGGGGGAGTGGGTAGTTGGGGCCTTCATCAACCTTTTCGGCAGCATTGCCATCAACTTTGGTACTAACCTTCTCAAATTGGGCCATAATGAGAGGGAGAGGCATTCAATGCTAGAAGGTGATGGAACAAATGGAAAGTTGCCTCTGAAACCTATTATATACTTCCATACATGGAGAGTTGGCTTTGTATTTTTCGTTCTTGGAAATTGCCTGAATTTTATATCCTTTGGATATGCTGCTCAGTCACTTCTAGCGGCACTCGGATCTATTCAGTTTGTATCCAACATTGCATTTGCTTACTTTGTGTTAAACAAAATGGTGACTGTCAAGGTAATGGTTGCCACAGCATTTATCGTACTTGGAAACATTTTCCTTGTTGCTTTCGGCAACCACCAGTCTCCTGTGTTCACACCGGAGCAGCTAGCTGAGAAATTTAGCAATATTACGTTCCTTCTGTACTGTCTGATTTTGATTTTGATTGTTGCCTTGCATCACTCCATTTACAGGAGAGGAGTACTTCTTCATGCAGTTAGCGGACATGATCTGAGATCCTATTGGCATATGCTGCTTCCTTTTTCTTATGCCATAGTTTCAGGTGCTGTAGGGTCATTCTCAGTGTTGTTTGCAAAATCTCTCTCTAATCTGTTACGGTTGGTGATGTCTAGCAGTTATCAGTTACATAGCTGGTTCACATATTCCATGCTCCTTCTATTTCTAAGTACAGCTGGATTTTGGATGACTAGGTTGAATGAAGGATTGTCGCTGTTCGATGCAATTCTTATTGTTCCTATGTTCCAAATTGCTTGGACATTCTTTTCCATTTGTACAGGATTTGTATATTTTCAAGAATACCAGGTATTAAATACACTAAGGACGACAATGTTCATACTCGGAATGATGTCTGTGTTTACAGGCATATCTTTGTTGGCACCTGATGATTCCAAAGGTGGAGATATCAAAGATAATTCATCATTAGTTTCGGTAAACATTCCAAAAGAAGTGGACAGGATTGTTGTGCCATCTGAGGATATACAAATCAGAGACACAAGATCATTTGTGCAAGGAATCCTGATGAAGATTTCGGAGGCACTAGTGAAAGCAAAGACTGCTTGTGCCTTATCTTTAGGATTTGGAGAGGATTCAATCAATGCATCTGCAGTGCTTGTGATGCCTATGGTGTCATCAAAGATAACAGGCTTTAGAGGAAATGGATTTGACCGTGCCAAGATTTTCTCCATGAGAAATTCAAATTCTGGTTGGGGTAAAATCTCTATGGATGAAGATGCTACAAAAATGCTAGAGACAAGCCCGATGCTCCCTGAAAGCCCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0005769 GO:0005886 GO:0006810 GO:0006811 GO:0006812 GO:0008150 GO:0012505 GO:0015693 GO:0016020 GO:0030001 GO:0031410 GO:0031982 GO:0043226 GO:0043227 GO:0043229 GO:0044424 GO:0044444 GO:0044464 GO:0051179 GO:0051234 GO:0070838 GO:0071944 GO:0072511 GO:0097708

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Mg_trans_NIPA

Protein Analysis

444

Amino Acids

49.15

Weight (kDa)

8.56

Isoelectric Point (pI)

34.06

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Mg_trans_NIPA	PF05653	7 - 310	3.4e-21	Magnesium transporter NIPA

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009613)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G26670 AT3G26670 AT3G26670 AT3G26670
fragaria_vesca	FvH4_6g54450
malus_domestica	MD09G1001000.v1.1 MD17G1004100.v1.1
prunus_persica	Prupe.3G315100_v2.0.a1 Prupe.3G315100_v2.0.a1 Prupe.3G315100_v2.0.a1 Prupe.3G315100_v2.0.a1
pyrus_communis	pycom17g00080
rosa_chinensis	RchiOBHm_Chr2g0176711
rosa_laevigata	RLG00000022438
rosa_multiflora	Rmu_ssc0000468.1_g000006
rosa_roxburghii	Rroxscaffold_2G00076230
rosa_rugosa	Rorug02G0597800 Rorug02G0598000
rosa_samantha	Rh2AG675200 Rh2BG686400 Rh2DG700500
rosa_wichuraiana	Rw2G055420

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	928
AciI	CCGC	2 cut(s)	254, 534
AclWI	GGATC	2 cut(s)	271, 543
AcsI	RAATTY	4 cut(s)	214, 431, 1243, 1249
AfaI	GTAC	6 cut(s)	64, 357, 458, 516, 721, 826
AfiI	CCNNNNNNNGG	1 cut(s)	504
AgsI	TTSAA	5 cut(s)	108, 748, 845, 1143, 1248
AhlI	ACTAGT	1 cut(s)	1090
AjnI	CCWGG	1 cut(s)	852
AluBI	AGCT	4 cut(s)	421, 425, 684, 725
AluI	AGCT	4 cut(s)	421, 425, 684, 725
Alw26I	GTCTC	3 cut(s)	402, 1035, 1295
AlwI	GGATC	2 cut(s)	271, 543
AlwNI	CAGNNNCTG	1 cut(s)	599
AoxI	GGCC	2 cut(s)	21, 82
ApeKI	GCWGC	4 cut(s)	42, 236, 418, 565
ApoI	RAATTY	4 cut(s)	214, 431, 1243, 1249
AspS9I	GGNCC	2 cut(s)	21, 82
AsuHPI	GGTGA	3 cut(s)	131, 331, 667
AsuNHI	GCTAGC	1 cut(s)	421
BanI	GGYRCC	1 cut(s)	928
BbvI	GCAGC	4 cut(s)	54, 223, 430, 552
BccI	CCATC	3 cut(s)	59, 116, 1027
BciT130I	CCWGG	1 cut(s)	854
BciVI	GTATCC	1 cut(s)	289
BcoDI	GTCTC	3 cut(s)	402, 1035, 1295
BcuI	ACTAGT	1 cut(s)	1090
BfaI	CTAG	7 cut(s)	113, 251, 422, 663, 741, 1091, 1298
BfmI	CTRYAG	2 cut(s)	600, 1155
BfuI	GTATCC	1 cut(s)	289
BisI	GCNGC	5 cut(s)	43, 237, 255, 419, 566
BlsI	GCNGC	5 cut(s)	44, 238, 256, 420, 567
BmcAI	AGTACT	1 cut(s)	516
Bme1390I	CCNGG	1 cut(s)	854
BmgT120I	GGNCC	2 cut(s)	21, 82
BmiI	GGNNCC	2 cut(s)	22, 930
BmrFI	CCNGG	1 cut(s)	854
BmsI	GCATC	6 cut(s)	499, 760, 1158, 1160, 1273, 1302
BmtI	GCTAGC	1 cut(s)	425
BsaWI	WCCGGW	1 cut(s)	412
Bsc4I	CCNNNNNNNGG	1 cut(s)	504
Bse1I	ACTGG	1 cut(s)	394
Bse3DI	GCAATG	2 cut(s)	45, 285
BseBI	CCWGG	1 cut(s)	854
BseGI	GGATG	2 cut(s)	741, 1282
BseLI	CCNNNNNNNGG	1 cut(s)	504
BseMI	GCAATG	2 cut(s)	45, 285
BseMII	CTCAG	5 cut(s)	254, 417, 536, 627, 1014
BseNI	ACTGG	1 cut(s)	394
BseRI	GAGGAG	1 cut(s)	525
BseXI	GCAGC	4 cut(s)	54, 223, 430, 552
BshFI	GGCC	2 cut(s)	23, 84
BshNI	GGYRCC	1 cut(s)	928
BsiSI	CCGG	1 cut(s)	413
BslI	CCNNNNNNNGG	1 cut(s)	504
BsmAI	GTCTC	3 cut(s)	402, 1035, 1295
BsmI	GAATGC	1 cut(s)	103
BsnI	GGCC	2 cut(s)	23, 84
Bsp1407I	TGTACA	1 cut(s)	824
Bsp143I	GATC	4 cut(s)	263, 541, 548, 1049
BspACI	CCGC	2 cut(s)	254, 534
BspANI	GGCC	2 cut(s)	23, 84
BspCNI	CTCAG	5 cut(s)	253, 418, 537, 626, 1015
BspLI	GGNNCC	2 cut(s)	22, 930
BspMAI	CTGCAG	1 cut(s)	1159
BspOI	GCTAGC	1 cut(s)	425
BspPI	GGATC	2 cut(s)	271, 543
BspT107I	GGYRCC	1 cut(s)	928
BsrDI	GCAATG	2 cut(s)	45, 285
BsrGI	TGTACA	1 cut(s)	824
BsrI	ACTGG	1 cut(s)	394
BssMI	GATC	4 cut(s)	263, 541, 548, 1049
Bst2UI	CCWGG	1 cut(s)	854
Bst4CI	ACNGT	4 cut(s)	325, 461, 651, 1220
BstAPI	GCANNNNNTGC	3 cut(s)	109, 565, 1106
BstAUI	TGTACA	1 cut(s)	824
BstC8I	GCNNGC	1 cut(s)	423
BstDEI	CTNAG	7 cut(s)	240, 426, 545, 613, 716, 869, 1023
BstF5I	GGATG	2 cut(s)	741, 1282
BstKTI	GATC	4 cut(s)	266, 544, 551, 1052
BstMAI	GTCTC	3 cut(s)	402, 1035, 1295
BstMBI	GATC	4 cut(s)	263, 541, 548, 1049
BstMWI	GCNNNNNNNGC	4 cut(s)	109, 565, 1106, 1168
BstNI	CCWGG	1 cut(s)	854
BstSCI	CCNGG	1 cut(s)	852
BstSFI	CTRYAG	2 cut(s)	600, 1155
BstV1I	GCAGC	4 cut(s)	54, 223, 430, 552
BstX2I	RGATCY	2 cut(s)	263, 548
BstYI	RGATCY	2 cut(s)	263, 548
BsuI	GTATCC	1 cut(s)	289
BsuRI	GGCC	2 cut(s)	23, 84
BtsCI	GGATG	2 cut(s)	741, 1282
BtsI	GCAGTG	1 cut(s)	1164
BtsIMutI	CAGTG	2 cut(s)	621, 1164
Cac8I	GCNNGC	1 cut(s)	423
CaiI	CAGNNNCTG	1 cut(s)	599
Cfr13I	GGNCC	2 cut(s)	21, 82
CsiI	ACCWGGT	1 cut(s)	852
Csp6I	GTAC	6 cut(s)	63, 356, 457, 515, 720, 825
CspCI	CAANNNNNGTGG	2 cut(s)	981, 1016
CviAII	CATG	5 cut(s)	171, 524, 539, 700, 1237
CviQI	GTAC	6 cut(s)	63, 356, 457, 515, 720, 825
DdeI	CTNAG	7 cut(s)	240, 426, 545, 613, 716, 869, 1023
DpnI	GATC	4 cut(s)	265, 543, 550, 1051
DpnII	GATC	4 cut(s)	263, 541, 548, 1049
Eco32I	GATATC	1 cut(s)	955
EcoO109I	RGGNCCY	1 cut(s)	21
EcoRII	CCWGG	1 cut(s)	852
EcoRV	GATATC	1 cut(s)	955
EcoT22I	ATGCAT	1 cut(s)	1153
FaeI	CATG	5 cut(s)	174, 527, 542, 703, 1240
FatI	CATG	5 cut(s)	170, 523, 538, 699, 1236
FauNDI	CATATG	1 cut(s)	561
Fnu4HI	GCNGC	5 cut(s)	43, 237, 255, 419, 566
FokI	GGATG	2 cut(s)	748, 1289
Fsp4HI	GCNGC	5 cut(s)	43, 237, 255, 419, 566
FspBI	CTAG	7 cut(s)	113, 251, 422, 663, 741, 1091, 1298
GluI	GCNGC	5 cut(s)	43, 237, 255, 419, 566
HaeIII	GGCC	2 cut(s)	23, 84
HapII	CCGG	1 cut(s)	413
Hin1II	CATG	5 cut(s)	174, 527, 542, 703, 1240
HinfI	GANTC	3 cut(s)	938, 1065, 1139
HpaII	CCGG	1 cut(s)	413
HphI	GGTGA	3 cut(s)	131, 331, 667
Hpy166II	GTNNAC	5 cut(s)	408, 690, 909, 985, 1003
Hpy188I	TCNGA	8 cut(s)	147, 263, 465, 546, 893, 1024, 1040, 1084
Hpy188III	TCNNGA	2 cut(s)	845, 1069
Hpy8I	GTNNAC	5 cut(s)	408, 690, 909, 985, 1003
HpyAV	CCTTC	6 cut(s)	34, 80, 110, 461, 716, 746
HpyCH4III	ACNGT	4 cut(s)	325, 461, 651, 1220
HpyCH4IV	ACGT	1 cut(s)	446
HpyCH4V	TGCA	8 cut(s)	290, 490, 527, 626, 773, 1060, 1151, 1157
HpyF10VI	GCNNNNNNNGC	4 cut(s)	109, 565, 1106, 1168
HpyF3I	CTNAG	7 cut(s)	240, 426, 545, 613, 716, 869, 1023
HpySE526I	ACGT	1 cut(s)	446
Hsp92II	CATG	5 cut(s)	174, 527, 542, 703, 1240
Kzo9I	GATC	4 cut(s)	263, 541, 548, 1049
LmnI	GCTCC	3 cut(s)	415, 708, 1320
Lsp1109I	GCAGC	4 cut(s)	54, 223, 430, 552
LweI	GCATC	6 cut(s)	499, 760, 1158, 1160, 1273, 1302
MabI	ACCWGGT	1 cut(s)	852
MaeI	CTAG	7 cut(s)	113, 251, 422, 663, 741, 1091, 1298
MaeII	ACGT	1 cut(s)	446
MaeIII	GTNAC	4 cut(s)	243, 319, 645, 675
MalI	GATC	4 cut(s)	265, 543, 550, 1051
MboI	GATC	4 cut(s)	263, 541, 548, 1049
MboII	GAAGA	3 cut(s)	512, 1087, 1292
MflI	RGATCY	2 cut(s)	263, 548
MluCI	AATT	9 cut(s)	77, 205, 214, 431, 774, 798, 964, 1243, 1249
MmeI	TCCRAC	1 cut(s)	306
MnlI	CCTC	8 cut(s)	87, 93, 153, 503, 1018, 1078, 1129, 1196
Mph1103I	ATGCAT	1 cut(s)	1153
MseI	TTAA	2 cut(s)	308, 860
MspA1I	CMGCKG	1 cut(s)	725
MspI	CCGG	1 cut(s)	413
MspR9I	CCNGG	1 cut(s)	854
Mva1269I	GAATGC	1 cut(s)	103
MvaI	CCWGG	1 cut(s)	854
MwoI	GCNNNNNNNGC	4 cut(s)	109, 565, 1106, 1168
NdeI	CATATG	1 cut(s)	561
NdeII	GATC	4 cut(s)	263, 541, 548, 1049
NheI	GCTAGC	1 cut(s)	421
NlaIII	CATG	5 cut(s)	174, 527, 542, 703, 1240
NlaIV	GGNNCC	2 cut(s)	22, 930
NmuCI	GTSAC	2 cut(s)	243, 319
NsiI	ATGCAT	1 cut(s)	1153
PctI	GAATGC	1 cut(s)	103
PfeI	GAWTC	3 cut(s)	938, 1065, 1139
PkrI	GCNGC	5 cut(s)	44, 238, 256, 420, 567
Psp6I	CCWGG	1 cut(s)	852
PspGI	CCWGG	1 cut(s)	852
PspN4I	GGNNCC	2 cut(s)	22, 930
PspPI	GGNCC	2 cut(s)	21, 82
PsrI	GAACNNNNNNTAC	2 cut(s)	180, 212
PstI	CTGCAG	1 cut(s)	1159
PstNI	CAGNNNCTG	1 cut(s)	599
PsuI	RGATCY	2 cut(s)	263, 548
PvuII	CAGCTG	1 cut(s)	725
RsaI	GTAC	6 cut(s)	64, 357, 458, 516, 721, 826
RsaNI	GTAC	6 cut(s)	63, 356, 457, 515, 720, 825
SaqAI	TTAA	2 cut(s)	308, 860
SatI	GCNGC	5 cut(s)	43, 237, 255, 419, 566
Sau3AI	GATC	4 cut(s)	263, 541, 548, 1049
Sau96I	GGNCC	2 cut(s)	21, 82
ScaI	AGTACT	1 cut(s)	516
ScrFI	CCNGG	1 cut(s)	854
SexAI	ACCWGGT	1 cut(s)	852
SfaNI	GCATC	6 cut(s)	499, 760, 1158, 1160, 1273, 1302
SfcI	CTRYAG	2 cut(s)	600, 1155
SpeI	ACTAGT	1 cut(s)	1090
Sse9I	AATT	9 cut(s)	77, 205, 214, 431, 774, 798, 964, 1243, 1249
SsiI	CCGC	2 cut(s)	254, 534
SspI	AATATT	1 cut(s)	442
SspMI	CTAG	7 cut(s)	113, 251, 422, 663, 741, 1091, 1298
StyD4I	CCNGG	1 cut(s)	852
TaaI	ACNGT	4 cut(s)	325, 461, 651, 1220
TaiI	ACGT	1 cut(s)	449
TaqI	TCGA	1 cut(s)	768
TasI	AATT	9 cut(s)	77, 205, 214, 431, 774, 798, 964, 1243, 1249
TatI	WGTACW	4 cut(s)	456, 514, 719, 824
TauI	GCSGC	1 cut(s)	257
TfiI	GAWTC	3 cut(s)	938, 1065, 1139
Tru1I	TTAA	2 cut(s)	308, 860
Tru9I	TTAA	2 cut(s)	308, 860
TscAI	CASTG	2 cut(s)	621, 1164
TseFI	GTSAC	2 cut(s)	243, 319
TseI	GCWGC	4 cut(s)	42, 236, 418, 565
Tsp45I	GTSAC	2 cut(s)	243, 319
TspDTI	ATGAA	7 cut(s)	16, 512, 765, 874, 957, 1088, 1293
TspRI	CASTG	2 cut(s)	621, 1164
XapI	RAATTY	4 cut(s)	214, 431, 1243, 1249
XspI	CTAG	7 cut(s)	113, 251, 422, 663, 741, 1091, 1298
ZrmI	AGTACT	1 cut(s)	516
Zsp2I	ATGCAT	1 cut(s)	1153

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.