Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000002

Orthogroup ID

OG0009613

Physical Location & Seq

Genomic Coordinates Reverse (-)

141504 .. 145844

Gene Structure 4341 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_2G00076230.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1326 bp

ATGGGGGAGTGGGTTGTTGGGGCTTTCATCAACCTTTTTGGCAGCATTGCCATCAACTTTGGAACTAACCTTCTTAAATTGGGGCATAATGAGAGAGAGAGGCATTCAATGCTAGAAGGTGATGGAACAAATGGAAAGCTTCCTTTGAAACCTATTATATACTTCCAGACATGGAGAGTTGGCTTTTTATTTTTTGTTCTTGGAAATTGCCTAAATTTTATATCCTTCGGATATGCTGCTCAGTCACTTCTGGCGGCACTGGGATCTATTCAATTTGTATCCAACATTGCATTTGCTTACTTTGTGTTAAACAAAATGGTGACTGTCAAGGTAATGGTTGCCACGACCTTTATTGTTCTTGGGAACATTTTTCTTGTTGCTTTTGGCAACCACCAGTCTCCTGTGTTCACACCAGAGCAGCTAGCTGAGAAATTTAGCAACATTACATTCCTTCTTTACTGTCTGATTTTGATTTTGATTGTTGCAGTACATCACTCCATTTACAGGAGAGGAGTAATTCTCCATGCAGTTTGTGGACATGATCTGAGATCCTATTGGCACATGCTGCTTCCTTTTTCCTATGCCATAGTTTCAGGTGCTGTAGGATCATTCTCAGTGTTGTTTGCAAAATCTCTCTCTAATCTGCTACGGTTGGTGATGTCTAGCAGTTATCAGTTACATAGCTGGTTCACATATTCCATGCTCCTTCTATTTCTAAGTACAGCTGGATTTTGGATGGCTAGGTTGAATGAAGGATTGTCACTGTTCGATGCAATTCTTATTGTTCCTATGTTCCAGATTGCTTGGACATTCTTTTCCATTTGTACAGGATTTGTATATTTTCAAGAATACCAGGTATTAAATGCACTAAGGACGACGATGTTCATACTCGGAATGATGTCTGTGTTCGCAGGCATATCTTTGCTGGCACCTGATGAATCCAAAGGTGGTGACGTCAAAGATAATTCATCTTTAGTTTCTGTAAGCATTCCAAAAGAAGTGGACAGGATTGTTGTGCCATCTGAGGATATACAAATCAGGGACACAAGATCATTTGTGCAAGGAATCCTGATGAAGATTTCAGATGCACTAGTGAAGGCAAAGACTGCTTGTGCATTATCTTTAGGATTTGGAGAGGATTCAATCAATGCATCTGCAGTGCTTGTGATGCCTATGGTGTCATCAAAGATAACAGGCTTTAGAGGAAATGGATTTGACCGTGCCAAGATTTTCTCCATGAGAAATTCCGGTTGGACCAAGATCTCTATGGATGAAGATGCTACAAAAATGCTAGAGACAAGCCCTATGCTCTCTGAAAGCCCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0005769 GO:0005886 GO:0006810 GO:0006811 GO:0006812 GO:0008150 GO:0012505 GO:0015693 GO:0016020 GO:0030001 GO:0031410 GO:0031982 GO:0043226 GO:0043227 GO:0043229 GO:0044424 GO:0044444 GO:0044464 GO:0051179 GO:0051234 GO:0070838 GO:0071944 GO:0072511 GO:0097708

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Mg_trans_NIPA

Protein Analysis

441

Amino Acids

48.89

Weight (kDa)

8.5

Isoelectric Point (pI)

34.17

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Mg_trans_NIPA	PF05653	7 - 310	1.1e-21	Magnesium transporter NIPA

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009613)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G26670 AT3G26670 AT3G26670 AT3G26670
fragaria_vesca	FvH4_6g54450
malus_domestica	MD09G1001000.v1.1 MD17G1004100.v1.1
prunus_persica	Prupe.3G315100_v2.0.a1 Prupe.3G315100_v2.0.a1 Prupe.3G315100_v2.0.a1 Prupe.3G315100_v2.0.a1
pyrus_communis	pycom17g00080
rosa_chinensis	RchiOBHm_Chr2g0176711
rosa_laevigata	RLG00000022438
rosa_multiflora	Rmu_ssc0000468.1_g000006
rosa_roxburghii	Rroxscaffold_2G00076230
rosa_rugosa	Rorug02G0597800 Rorug02G0598000
rosa_samantha	Rh2AG675200 Rh2BG686400 Rh2DG700500
rosa_wichuraiana	Rw2G055420

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	957
AccB1I	GGYRCC	1 cut(s)	928
AciI	CCGC	1 cut(s)	254
AclWI	GGATC	3 cut(s)	271, 543, 613
AcsI	RAATTY	3 cut(s)	214, 431, 1243
AcyI	GRCGYC	1 cut(s)	954
AfaI	GTAC	3 cut(s)	489, 721, 826
AfiI	CCNNNNNNNGG	1 cut(s)	504
AgsI	TTSAA	6 cut(s)	108, 148, 272, 748, 845, 1143
AhlI	ACTAGT	1 cut(s)	1090
AjnI	CCWGG	1 cut(s)	852
AjuI	GAANNNNNNNTTGG	2 cut(s)	1234, 1266
AluBI	AGCT	5 cut(s)	139, 421, 425, 684, 725
AluI	AGCT	5 cut(s)	139, 421, 425, 684, 725
Alw26I	GTCTC	2 cut(s)	402, 1289
AlwI	GGATC	3 cut(s)	271, 543, 613
AlwNI	CAGNNNCTG	1 cut(s)	599
ApeKI	GCWGC	4 cut(s)	42, 236, 418, 565
ApoI	RAATTY	3 cut(s)	214, 431, 1243
AspS9I	GGNCC	1 cut(s)	1254
AsuHPI	GGTGA	4 cut(s)	131, 331, 667, 962
AsuNHI	GCTAGC	1 cut(s)	421
AvaII	GGWCC	1 cut(s)	1254
BanI	GGYRCC	1 cut(s)	928
BbvI	GCAGC	4 cut(s)	54, 223, 430, 552
BccI	CCATC	4 cut(s)	59, 116, 730, 1027
BciT130I	CCWGG	1 cut(s)	854
BciVI	GTATCC	1 cut(s)	289
BcoDI	GTCTC	2 cut(s)	402, 1289
BcuI	ACTAGT	1 cut(s)	1090
BfaI	CTAG	6 cut(s)	113, 422, 663, 741, 1091, 1292
BfmI	CTRYAG	2 cut(s)	600, 1155
BfuI	GTATCC	1 cut(s)	289
BglII	AGATCT	1 cut(s)	1260
BisI	GCNGC	5 cut(s)	43, 237, 255, 419, 566
BlsI	GCNGC	5 cut(s)	44, 238, 256, 420, 567
Bme1390I	CCNGG	1 cut(s)	854
Bme18I	GGWCC	1 cut(s)	1254
BmgT120I	GGNCC	1 cut(s)	1254
BmiI	GGNNCC	1 cut(s)	930
BmrFI	CCNGG	1 cut(s)	854
BmrI	ACTGGG	1 cut(s)	269
BmsI	GCATC	5 cut(s)	760, 1075, 1158, 1160, 1267
BmtI	GCTAGC	1 cut(s)	425
BmuI	ACTGGG	1 cut(s)	269
BplI	GAGNNNNNCTC	2 cut(s)	504, 536
BsaHI	GRCGYC	1 cut(s)	954
BsaWI	WCCGGW	1 cut(s)	1247
Bsc4I	CCNNNNNNNGG	1 cut(s)	504
Bse1I	ACTGG	2 cut(s)	264, 394
Bse3DI	GCAATG	2 cut(s)	45, 285
BseBI	CCWGG	1 cut(s)	854
BseGI	GGATG	2 cut(s)	741, 1276
BseLI	CCNNNNNNNGG	1 cut(s)	504
BseMI	GCAATG	2 cut(s)	45, 285
BseMII	CTCAG	5 cut(s)	254, 417, 536, 627, 1014
BseNI	ACTGG	2 cut(s)	264, 394
BseRI	GAGGAG	1 cut(s)	525
BseXI	GCAGC	4 cut(s)	54, 223, 430, 552
BshNI	GGYRCC	1 cut(s)	928
BsiSI	CCGG	1 cut(s)	1248
BslFI	GGGAC	1 cut(s)	1055
BslI	CCNNNNNNNGG	1 cut(s)	504
BsmAI	GTCTC	2 cut(s)	402, 1289
BsmFI	GGGAC	1 cut(s)	1055
BsmI	GAATGC	2 cut(s)	103, 987
Bsp1407I	TGTACA	1 cut(s)	824
Bsp143I	GATC	6 cut(s)	263, 541, 548, 605, 1049, 1260
BspACI	CCGC	1 cut(s)	254
BspCNI	CTCAG	5 cut(s)	253, 418, 537, 626, 1015
BspLI	GGNNCC	1 cut(s)	930
BspMAI	CTGCAG	1 cut(s)	1159
BspOI	GCTAGC	1 cut(s)	425
BspPI	GGATC	3 cut(s)	271, 543, 613
BspT107I	GGYRCC	1 cut(s)	928
BsrDI	GCAATG	2 cut(s)	45, 285
BsrGI	TGTACA	1 cut(s)	824
BsrI	ACTGG	2 cut(s)	264, 394
BssMI	GATC	6 cut(s)	263, 541, 548, 605, 1049, 1260
BssNI	GRCGYC	1 cut(s)	954
Bst2UI	CCWGG	1 cut(s)	854
Bst4CI	ACNGT	5 cut(s)	325, 461, 651, 765, 1220
BstACI	GRCGYC	1 cut(s)	954
BstAPI	GCANNNNNTGC	3 cut(s)	109, 565, 1106
BstAUI	TGTACA	1 cut(s)	824
BstC8I	GCNNGC	3 cut(s)	423, 913, 927
BstDEI	CTNAG	7 cut(s)	240, 426, 545, 613, 716, 869, 1023
BstF5I	GGATG	2 cut(s)	741, 1276
BstKTI	GATC	6 cut(s)	266, 544, 551, 608, 1052, 1263
BstMAI	GTCTC	2 cut(s)	402, 1289
BstMBI	GATC	6 cut(s)	263, 541, 548, 605, 1049, 1260
BstMWI	GCNNNNNNNGC	4 cut(s)	109, 565, 1106, 1168
BstNI	CCWGG	1 cut(s)	854
BstNSI	RCATGY	1 cut(s)	565
BstSCI	CCNGG	1 cut(s)	852
BstSFI	CTRYAG	2 cut(s)	600, 1155
BstV1I	GCAGC	4 cut(s)	54, 223, 430, 552
BstX2I	RGATCY	3 cut(s)	263, 548, 1260
BstYI	RGATCY	3 cut(s)	263, 548, 1260
BsuI	GTATCC	1 cut(s)	289
BtsCI	GGATG	2 cut(s)	741, 1276
BtsI	GCAGTG	1 cut(s)	1164
BtsIMutI	CAGTG	4 cut(s)	257, 621, 761, 1164
Cac8I	GCNNGC	3 cut(s)	423, 913, 927
CaiI	CAGNNNCTG	1 cut(s)	599
Cfr13I	GGNCC	1 cut(s)	1254
CsiI	ACCWGGT	1 cut(s)	852
Csp6I	GTAC	3 cut(s)	488, 720, 825
CspCI	CAANNNNNGTGG	2 cut(s)	981, 1016
CviAII	CATG	6 cut(s)	171, 524, 539, 562, 700, 1237
CviQI	GTAC	3 cut(s)	488, 720, 825
DdeI	CTNAG	7 cut(s)	240, 426, 545, 613, 716, 869, 1023
DpnI	GATC	6 cut(s)	265, 543, 550, 607, 1051, 1262
DpnII	GATC	6 cut(s)	263, 541, 548, 605, 1049, 1260
Eco47I	GGWCC	1 cut(s)	1254
EcoRII	CCWGG	1 cut(s)	852
EcoT22I	ATGCAT	1 cut(s)	1153
FaeI	CATG	6 cut(s)	174, 527, 542, 565, 703, 1240
FaqI	GGGAC	1 cut(s)	1055
FatI	CATG	6 cut(s)	170, 523, 538, 561, 699, 1236
Fnu4HI	GCNGC	5 cut(s)	43, 237, 255, 419, 566
FokI	GGATG	2 cut(s)	748, 1283
Fsp4HI	GCNGC	5 cut(s)	43, 237, 255, 419, 566
FspBI	CTAG	6 cut(s)	113, 422, 663, 741, 1091, 1292
GluI	GCNGC	5 cut(s)	43, 237, 255, 419, 566
HapII	CCGG	1 cut(s)	1248
Hin1I	GRCGYC	1 cut(s)	954
Hin1II	CATG	6 cut(s)	174, 527, 542, 565, 703, 1240
HindIII	AAGCTT	1 cut(s)	137
HinfI	GANTC	3 cut(s)	938, 1065, 1139
HpaII	CCGG	1 cut(s)	1248
HphI	GGTGA	4 cut(s)	131, 331, 667, 962
Hpy166II	GTNNAC	4 cut(s)	408, 536, 690, 1003
Hpy188I	TCNGA	7 cut(s)	230, 465, 546, 893, 1024, 1084, 1315
Hpy188III	TCNNGA	4 cut(s)	166, 796, 845, 1069
Hpy8I	GTNNAC	4 cut(s)	408, 536, 690, 1003
Hpy99I	CGWCG	1 cut(s)	880
HpyAV	CCTTC	7 cut(s)	80, 110, 235, 461, 716, 746, 1090
HpyCH4III	ACNGT	5 cut(s)	325, 461, 651, 765, 1220
HpyCH4IV	ACGT	1 cut(s)	954
HpyF10VI	GCNNNNNNNGC	4 cut(s)	109, 565, 1106, 1168
HpyF3I	CTNAG	7 cut(s)	240, 426, 545, 613, 716, 869, 1023
HpySE526I	ACGT	1 cut(s)	954
Hsp92I	GRCGYC	1 cut(s)	954
Hsp92II	CATG	6 cut(s)	174, 527, 542, 565, 703, 1240
Kzo9I	GATC	6 cut(s)	263, 541, 548, 605, 1049, 1260
LmnI	GCTCC	1 cut(s)	708
Lsp1109I	GCAGC	4 cut(s)	54, 223, 430, 552
LweI	GCATC	5 cut(s)	760, 1075, 1158, 1160, 1267
MabI	ACCWGGT	1 cut(s)	852
MaeI	CTAG	6 cut(s)	113, 422, 663, 741, 1091, 1292
MaeII	ACGT	1 cut(s)	954
MaeIII	GTNAC	5 cut(s)	243, 319, 675, 759, 950
MalI	GATC	6 cut(s)	265, 543, 550, 607, 1051, 1262
MboI	GATC	6 cut(s)	263, 541, 548, 605, 1049, 1260
MboII	GAAGA	2 cut(s)	1087, 1286
MflI	RGATCY	3 cut(s)	263, 548, 1260
MluCI	AATT	9 cut(s)	77, 205, 214, 272, 431, 516, 774, 964, 1243
MmeI	TCCRAC	2 cut(s)	306, 1232
MnlI	CCTC	5 cut(s)	93, 503, 1018, 1129, 1196
Mph1103I	ATGCAT	1 cut(s)	1153
MseI	TTAA	3 cut(s)	75, 308, 860
MspA1I	CMGCKG	1 cut(s)	725
MspI	CCGG	1 cut(s)	1248
MspR9I	CCNGG	1 cut(s)	854
Mva1269I	GAATGC	2 cut(s)	103, 987
MvaI	CCWGG	1 cut(s)	854
MwoI	GCNNNNNNNGC	4 cut(s)	109, 565, 1106, 1168
NdeII	GATC	6 cut(s)	263, 541, 548, 605, 1049, 1260
NheI	GCTAGC	1 cut(s)	421
NlaIII	CATG	6 cut(s)	174, 527, 542, 565, 703, 1240
NlaIV	GGNNCC	1 cut(s)	930
NmuCI	GTSAC	4 cut(s)	243, 319, 759, 950
NsiI	ATGCAT	1 cut(s)	1153
NspI	RCATGY	1 cut(s)	565
PctI	GAATGC	2 cut(s)	103, 987
PfeI	GAWTC	3 cut(s)	938, 1065, 1139
PkrI	GCNGC	5 cut(s)	44, 238, 256, 420, 567
Psp6I	CCWGG	1 cut(s)	852
PspGI	CCWGG	1 cut(s)	852
PspN4I	GGNNCC	1 cut(s)	930
PspPI	GGNCC	1 cut(s)	1254
PstI	CTGCAG	1 cut(s)	1159
PstNI	CAGNNNCTG	1 cut(s)	599
PsuI	RGATCY	3 cut(s)	263, 548, 1260
PvuII	CAGCTG	1 cut(s)	725
RsaI	GTAC	3 cut(s)	489, 721, 826
RsaNI	GTAC	3 cut(s)	488, 720, 825
SaqAI	TTAA	3 cut(s)	75, 308, 860
SatI	GCNGC	5 cut(s)	43, 237, 255, 419, 566
Sau3AI	GATC	6 cut(s)	263, 541, 548, 605, 1049, 1260
Sau96I	GGNCC	1 cut(s)	1254
ScrFI	CCNGG	1 cut(s)	854
SexAI	ACCWGGT	1 cut(s)	852
SfaNI	GCATC	5 cut(s)	760, 1075, 1158, 1160, 1267
SfcI	CTRYAG	2 cut(s)	600, 1155
SinI	GGWCC	1 cut(s)	1254
SpeI	ACTAGT	1 cut(s)	1090
Sse9I	AATT	9 cut(s)	77, 205, 214, 272, 431, 516, 774, 964, 1243
SsiI	CCGC	1 cut(s)	254
SspMI	CTAG	6 cut(s)	113, 422, 663, 741, 1091, 1292
StyD4I	CCNGG	1 cut(s)	852
TaaI	ACNGT	5 cut(s)	325, 461, 651, 765, 1220
TaiI	ACGT	1 cut(s)	957
TaqI	TCGA	1 cut(s)	768
TasI	AATT	9 cut(s)	77, 205, 214, 272, 431, 516, 774, 964, 1243
TatI	WGTACW	3 cut(s)	487, 719, 824
TauI	GCSGC	1 cut(s)	257
TfiI	GAWTC	3 cut(s)	938, 1065, 1139
Tru1I	TTAA	3 cut(s)	75, 308, 860
Tru9I	TTAA	3 cut(s)	75, 308, 860
TscAI	CASTG	4 cut(s)	264, 621, 768, 1164
TseFI	GTSAC	4 cut(s)	243, 319, 759, 950
TseI	GCWGC	4 cut(s)	42, 236, 418, 565
Tsp45I	GTSAC	4 cut(s)	243, 319, 759, 950
TspDTI	ATGAA	7 cut(s)	16, 765, 874, 951, 957, 1088, 1287
TspRI	CASTG	4 cut(s)	264, 621, 768, 1164
VpaK11BI	GGWCC	1 cut(s)	1254
XapI	RAATTY	3 cut(s)	214, 431, 1243
XceI	RCATGY	1 cut(s)	565
XcmI	CCANNNNNNNNNTGG	2 cut(s)	530, 1264
XspI	CTAG	6 cut(s)	113, 422, 663, 741, 1091, 1292
ZraI	GACGTC	1 cut(s)	955
Zsp2I	ATGCAT	1 cut(s)	1153

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.