Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr09

Orthogroup ID

OG0009613

Physical Location & Seq

Genomic Coordinates Reverse (-)

159264 .. 163713

Gene Structure 4450 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD09G1001000.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1329 bp

ATGGGGGAGTGGGTCGTTGGAGCTTTCATTAACCTTTTTGGCAGCATTGCCATCAACTTTGGAACTAACCTTCTCAAATTGGGGCATAACGAGAGACATTCAATACTAGAAAGTGATGGAGGAAATGGAAAGCTTCCTTTGAAGCCTATTATACAATATCAGACATGGAGAATTGGCTTTTTATTTTTCGCTCTTGGTAATTGCCTAAATTTCGTATCCTTCGGATATGCTGCTCAGTCACTTCTTGCGGCACTGGGTTCTGTTCAGTTTGTATCCAACATTGCCTTTGCTTACTTTGTGTTAAACAAAATGGTGACTGTTAAGGTAATGGTTGCCACAGCCTTTATCGTTCTTGGGAATATTTTTCTCGTTGCTTTTGGCAACCACCAGTCACCTGTATACACACCTGAGCAGCTGGCCGAGAAATACAGCAATATTGCATTCCTTTTTTACTGTATGATTTTGGTTTTAGTTGTTGCCTTGCATCACTCCATTTACAGGAGAGGAGAACTTCTGCATGCTGTTTCTGGCCAGGAACTGAGACCCTACTGGCATATGCTGCTTCCTTTTTCCTATGCTATAGTTTCAGGTGCTGTTGGATCATTCTCAGTGCTGTTTGCAAAATCTCTATCTAACCTGCTACGTTTGGCCTTGTCTAGTAGTTATCAGTTACATAGCTGGTTCACATACTCCATGCTCCTTTTATTTCTAAGTACAGCTGGATTTTGGATGGCTCGGTTGAATGAAGGATTATCCTTTTTCGATGCAATTCTTATTGTTCCTATGTTTCAAATTGCTTGGACATTCTTTTCCATTTGTACAGGATTTGTATATTTTCAAGAATACCAGGTATTGGATACACTAAGGACAACAATGTTCATACTGGGAATGATGTCCGTGTTCGTAGGCATTACTTTGCTGGCACCTGATGATTCCAAAGGTGCTGAAGTCAAAGATAATCCATCTTTAGTTTCTGTGGTGTCTTCAAGCATTTCAAAAGACGTGGGCAGGTTAGCTGTTTCATCTGAAGACGTACAAACTAGAGATGCGAAATCATTTGTGCAAGGAATCCTGGTGAAGATTTCAGATGCAATAGTGAAGGCAAAGACTGCTTGTGCATTGGCACTGGGATTTGGAGAGGATTCTATTAATGCATCTGCGGTCCTTGTGATGCCTATGGTGTCATCAAAGATAACGGGCTTTAGAGGAAATGGGTTTGACCGTGCCAAGATTTTCTCCATGAGAAATATTGGTTGGACTAAGATCTCTATGGATGAAGATGCTACAAAAATGCTGGAGACAAGCCCGGTGCTTCCCGAGAGCCCGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0005769 GO:0005886 GO:0006810 GO:0006811 GO:0006812 GO:0008150 GO:0012505 GO:0015693 GO:0016020 GO:0030001 GO:0031410 GO:0031982 GO:0043226 GO:0043227 GO:0043229 GO:0044424 GO:0044444 GO:0044464 GO:0051179 GO:0051234 GO:0070838 GO:0071944 GO:0072511 GO:0097708

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Mg_trans_NIPA

Protein Analysis

443

Amino Acids

48.66

Weight (kDa)

8.23

Isoelectric Point (pI)

34.81

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Mg_trans_NIPA	PF05653	6 - 308	1.5e-21	Magnesium transporter NIPA

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009613)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G26670 AT3G26670 AT3G26670 AT3G26670
fragaria_vesca	FvH4_6g54450
malus_domestica	MD09G1001000.v1.1 MD17G1004100.v1.1
prunus_persica	Prupe.3G315100_v2.0.a1 Prupe.3G315100_v2.0.a1 Prupe.3G315100_v2.0.a1 Prupe.3G315100_v2.0.a1
pyrus_communis	pycom17g00080
rosa_chinensis	RchiOBHm_Chr2g0176711
rosa_laevigata	RLG00000022438
rosa_multiflora	Rmu_ssc0000468.1_g000006
rosa_roxburghii	Rroxscaffold_2G00076230
rosa_rugosa	Rorug02G0597800 Rorug02G0598000
rosa_samantha	Rh2AG675200 Rh2BG686400 Rh2DG700500
rosa_wichuraiana	Rw2G055420

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	2 cut(s)	645, 999
AccB1I	GGYRCC	1 cut(s)	922
AccB7I	CCANNNNNTGG	1 cut(s)	853
AccI	GTMKAC	1 cut(s)	399
AciI	CCGC	2 cut(s)	248, 1160
AclWI	GGATC	1 cut(s)	607
AcoI	YGGCCR	2 cut(s)	417, 529
AcsI	RAATTY	1 cut(s)	208
AcuI	CTGAAG	2 cut(s)	966, 1047
AfaI	GTAC	3 cut(s)	715, 820, 1035
AfiI	CCNNNNNNNGG	2 cut(s)	498, 853
AgsI	TTSAA	7 cut(s)	102, 142, 742, 791, 839, 987, 996
AjiI	CACGTC	1 cut(s)	1003
AjnI	CCWGG	3 cut(s)	531, 846, 1071
AjuI	GAANNNNNNNTTGG	2 cut(s)	1237, 1269
AluBI	AGCT	6 cut(s)	23, 133, 415, 678, 719, 1016
AluI	AGCT	6 cut(s)	23, 133, 415, 678, 719, 1016
Alw26I	GTCTC	3 cut(s)	88, 535, 1292
AlwI	GGATC	1 cut(s)	607
AlwNI	CAGNNNCTG	2 cut(s)	538, 593
Ama87I	CYCGRG	1 cut(s)	1316
AoxI	GGCC	3 cut(s)	417, 529, 648
ApeKI	GCWGC	4 cut(s)	42, 230, 412, 559
ApoI	RAATTY	1 cut(s)	208
AseI	ATTAAT	1 cut(s)	1149
AspS9I	GGNCC	1 cut(s)	1162
AsuC2I	CCSGG	1 cut(s)	1307
AsuHPI	GGTGA	3 cut(s)	325, 384, 1087
AvaI	CYCGRG	1 cut(s)	1316
AvaII	GGWCC	1 cut(s)	1162
BalI	TGGCCA	1 cut(s)	531
BanI	GGYRCC	1 cut(s)	922
BanII	GRGCYC	1 cut(s)	1325
BbsI	GAAGAC	2 cut(s)	975, 1035
BbvI	GCAGC	4 cut(s)	54, 217, 424, 546
BccI	CCATC	4 cut(s)	59, 110, 724, 970
BciT130I	CCWGG	3 cut(s)	533, 848, 1073
BciVI	GTATCC	3 cut(s)	226, 283, 850
BcnI	CCSGG	1 cut(s)	1307
BcoDI	GTCTC	3 cut(s)	88, 535, 1292
BfaI	CTAG	3 cut(s)	107, 657, 1041
BfmI	CTRYAG	1 cut(s)	579
BfuAI	ACCTGC	2 cut(s)	645, 999
BfuI	GTATCC	3 cut(s)	226, 283, 850
BglII	AGATCT	1 cut(s)	1263
BisI	GCNGC	5 cut(s)	43, 231, 249, 413, 560
BlsI	GCNGC	5 cut(s)	44, 232, 250, 414, 561
Bme1390I	CCNGG	4 cut(s)	533, 848, 1073, 1307
Bme18I	GGWCC	1 cut(s)	1162
BmeT110I	CYCGRG	1 cut(s)	1316
BmgBI	CACGTC	1 cut(s)	1003
BmgT120I	GGNCC	1 cut(s)	1162
BmiI	GGNNCC	1 cut(s)	924
BmrFI	CCNGG	4 cut(s)	533, 848, 1073, 1307
BmrI	ACTGGG	3 cut(s)	263, 893, 1136
BmsI	GCATC	7 cut(s)	493, 754, 1036, 1078, 1161, 1163, 1270
BmuI	ACTGGG	3 cut(s)	263, 893, 1136
BpiI	GAAGAC	2 cut(s)	975, 1035
BpmI	CTGGAG	1 cut(s)	1316
Bpu10I	CCTNAGC	1 cut(s)	408
BpuMI	CCSGG	1 cut(s)	1307
BsaI	GGTCTC	1 cut(s)	535
Bsc4I	CCNNNNNNNGG	2 cut(s)	498, 853
Bse1I	ACTGG	5 cut(s)	258, 388, 554, 888, 1131
Bse3DI	GCAATG	2 cut(s)	45, 279
BseBI	CCWGG	3 cut(s)	533, 848, 1073
BseGI	GGATG	2 cut(s)	735, 1279
BseLI	CCNNNNNNNGG	2 cut(s)	498, 853
BseMI	GCAATG	2 cut(s)	45, 279
BseMII	CTCAG	4 cut(s)	248, 399, 530, 621
BseNI	ACTGG	5 cut(s)	258, 388, 554, 888, 1131
BseRI	GAGGAG	1 cut(s)	519
BseXI	GCAGC	4 cut(s)	54, 217, 424, 546
BshFI	GGCC	3 cut(s)	419, 531, 650
BshNI	GGYRCC	1 cut(s)	922
BsiHKCI	CYCGRG	1 cut(s)	1316
BsiSI	CCGG	1 cut(s)	1307
BslI	CCNNNNNNNGG	2 cut(s)	498, 853
BsmAI	GTCTC	3 cut(s)	88, 535, 1292
BsmI	GAATGC	1 cut(s)	440
BsnI	GGCC	3 cut(s)	419, 531, 650
Bso31I	GGTCTC	1 cut(s)	535
BsoBI	CYCGRG	1 cut(s)	1316
Bsp1286I	GDGCHC	1 cut(s)	1325
Bsp1407I	TGTACA	1 cut(s)	818
Bsp143I	GATC	2 cut(s)	599, 1263
BspACI	CCGC	2 cut(s)	248, 1160
BspANI	GGCC	3 cut(s)	419, 531, 650
BspCNI	CTCAG	4 cut(s)	247, 400, 531, 620
BspLI	GGNNCC	1 cut(s)	924
BspMI	ACCTGC	2 cut(s)	645, 999
BspPI	GGATC	1 cut(s)	607
BspT107I	GGYRCC	1 cut(s)	922
BspTNI	GGTCTC	1 cut(s)	535
BsrDI	GCAATG	2 cut(s)	45, 279
BsrGI	TGTACA	1 cut(s)	818
BsrI	ACTGG	5 cut(s)	258, 388, 554, 888, 1131
BssMI	GATC	2 cut(s)	599, 1263
BssNAI	GTATAC	1 cut(s)	400
Bst1107I	GTATAC	1 cut(s)	400
Bst2UI	CCWGG	3 cut(s)	533, 848, 1073
Bst4CI	ACNGT	3 cut(s)	319, 455, 1223
BstAPI	GCANNNNNTGC	2 cut(s)	559, 1109
BstAUI	TGTACA	1 cut(s)	818
BstC8I	GCNNGC	3 cut(s)	417, 519, 921
BstDEI	CTNAG	7 cut(s)	234, 408, 539, 607, 710, 863, 1260
BstF5I	GGATG	2 cut(s)	735, 1279
BstKTI	GATC	2 cut(s)	602, 1266
BstMAI	GTCTC	3 cut(s)	88, 535, 1292
BstMBI	GATC	2 cut(s)	599, 1263
BstMWI	GCNNNNNNNGC	2 cut(s)	559, 1109
BstNI	CCWGG	3 cut(s)	533, 848, 1073
BstNSI	RCATGY	1 cut(s)	521
BstSCI	CCNGG	4 cut(s)	531, 846, 1071, 1305
BstSFI	CTRYAG	1 cut(s)	579
BstV1I	GCAGC	4 cut(s)	54, 217, 424, 546
BstV2I	GAAGAC	2 cut(s)	975, 1035
BstX2I	RGATCY	1 cut(s)	1263
BstYI	RGATCY	1 cut(s)	1263
BstZ17I	GTATAC	1 cut(s)	400
BsuI	GTATCC	3 cut(s)	226, 283, 850
BsuRI	GGCC	3 cut(s)	419, 531, 650
BtrI	CACGTC	1 cut(s)	1003
BtsCI	GGATG	2 cut(s)	735, 1279
BtsIMutI	CAGTG	3 cut(s)	251, 615, 1124
BveI	ACCTGC	2 cut(s)	645, 999
Cac8I	GCNNGC	3 cut(s)	417, 519, 921
CaiI	CAGNNNCTG	2 cut(s)	538, 593
Cfr13I	GGNCC	1 cut(s)	1162
CsiI	ACCWGGT	1 cut(s)	846
Csp6I	GTAC	3 cut(s)	714, 819, 1034
CspCI	CAANNNNNGTGG	2 cut(s)	984, 1019
CviAII	CATG	4 cut(s)	165, 518, 694, 1240
CviQI	GTAC	3 cut(s)	714, 819, 1034
DdeI	CTNAG	7 cut(s)	234, 408, 539, 607, 710, 863, 1260
DpnI	GATC	2 cut(s)	601, 1265
DpnII	GATC	2 cut(s)	599, 1263
EaeI	YGGCCR	2 cut(s)	417, 529
Eco24I	GRGCYC	1 cut(s)	1325
Eco31I	GGTCTC	1 cut(s)	535
Eco47I	GGWCC	1 cut(s)	1162
Eco57I	CTGAAG	2 cut(s)	966, 1047
Eco88I	CYCGRG	1 cut(s)	1316
EcoRII	CCWGG	3 cut(s)	531, 846, 1071
EcoT22I	ATGCAT	1 cut(s)	1156
EcoT38I	GRGCYC	1 cut(s)	1325
FaeI	CATG	4 cut(s)	168, 521, 697, 1243
FatI	CATG	4 cut(s)	164, 517, 693, 1239
FauNDI	CATATG	1 cut(s)	555
FblI	GTMKAC	1 cut(s)	399
Fnu4HI	GCNGC	5 cut(s)	43, 231, 249, 413, 560
FokI	GGATG	2 cut(s)	742, 1286
FriOI	GRGCYC	1 cut(s)	1325
Fsp4HI	GCNGC	5 cut(s)	43, 231, 249, 413, 560
FspBI	CTAG	3 cut(s)	107, 657, 1041
GluI	GCNGC	5 cut(s)	43, 231, 249, 413, 560
GsuI	CTGGAG	1 cut(s)	1316
HaeIII	GGCC	3 cut(s)	419, 531, 650
HapII	CCGG	1 cut(s)	1307
Hin1II	CATG	4 cut(s)	168, 521, 697, 1243
HindIII	AAGCTT	1 cut(s)	131
HinfI	GANTC	3 cut(s)	932, 1068, 1142
HpaII	CCGG	1 cut(s)	1307
HphI	GGTGA	3 cut(s)	325, 384, 1087
Hpy166II	GTNNAC	2 cut(s)	400, 684
Hpy188I	TCNGA	4 cut(s)	162, 224, 1027, 1087
Hpy188III	TCNNGA	2 cut(s)	839, 1316
Hpy8I	GTNNAC	2 cut(s)	400, 684
HpyAV	CCTTC	4 cut(s)	80, 229, 740, 1093
HpyCH4III	ACNGT	3 cut(s)	319, 455, 1223
HpyCH4IV	ACGT	3 cut(s)	643, 1002, 1032
HpyCH4V	TGCA	9 cut(s)	440, 484, 517, 620, 767, 1063, 1091, 1118, 1154
HpyF10VI	GCNNNNNNNGC	2 cut(s)	559, 1109
HpyF3I	CTNAG	7 cut(s)	234, 408, 539, 607, 710, 863, 1260
HpySE526I	ACGT	3 cut(s)	643, 1002, 1032
Hsp92II	CATG	4 cut(s)	168, 521, 697, 1243
Kzo9I	GATC	2 cut(s)	599, 1263
LmnI	GCTCC	2 cut(s)	20, 702
Lsp1109I	GCAGC	4 cut(s)	54, 217, 424, 546
LweI	GCATC	7 cut(s)	493, 754, 1036, 1078, 1161, 1163, 1270
MabI	ACCWGGT	1 cut(s)	846
MaeI	CTAG	3 cut(s)	107, 657, 1041
MaeII	ACGT	3 cut(s)	643, 1002, 1032
MaeIII	GTNAC	4 cut(s)	237, 313, 390, 669
MalI	GATC	2 cut(s)	601, 1265
MboI	GATC	2 cut(s)	599, 1263
MboII	GAAGA	4 cut(s)	975, 1040, 1090, 1289
MflI	RGATCY	1 cut(s)	1263
MhlI	GDGCHC	1 cut(s)	1325
MlsI	TGGCCA	1 cut(s)	531
MluCI	AATT	6 cut(s)	77, 171, 199, 208, 768, 792
MluNI	TGGCCA	1 cut(s)	531
MmeI	TCCRAC	3 cut(s)	300, 577, 1235
MnlI	CCTC	4 cut(s)	113, 497, 1132, 1199
Mox20I	TGGCCA	1 cut(s)	531
Mph1103I	ATGCAT	1 cut(s)	1156
MscI	TGGCCA	1 cut(s)	531
MseI	TTAA	4 cut(s)	30, 302, 321, 1149
Msp20I	TGGCCA	1 cut(s)	531
MspA1I	CMGCKG	2 cut(s)	415, 719
MspI	CCGG	1 cut(s)	1307
MspR9I	CCNGG	4 cut(s)	533, 848, 1073, 1307
Mva1269I	GAATGC	1 cut(s)	440
MvaI	CCWGG	3 cut(s)	533, 848, 1073
MwoI	GCNNNNNNNGC	2 cut(s)	559, 1109
NciI	CCSGG	1 cut(s)	1307
NdeI	CATATG	1 cut(s)	555
NdeII	GATC	2 cut(s)	599, 1263
NlaIII	CATG	4 cut(s)	168, 521, 697, 1243
NlaIV	GGNNCC	1 cut(s)	924
NmeAIII	GCCGAG	1 cut(s)	445
NmuCI	GTSAC	3 cut(s)	237, 313, 390
NsiI	ATGCAT	1 cut(s)	1156
NspI	RCATGY	1 cut(s)	521
PaeI	GCATGC	1 cut(s)	521
PctI	GAATGC	1 cut(s)	440
PfeI	GAWTC	3 cut(s)	932, 1068, 1142
PflMI	CCANNNNNTGG	1 cut(s)	853
PkrI	GCNGC	5 cut(s)	44, 232, 250, 414, 561
PshBI	ATTAAT	1 cut(s)	1149
Psp6I	CCWGG	3 cut(s)	531, 846, 1071
PspGI	CCWGG	3 cut(s)	531, 846, 1071
PspN4I	GGNNCC	1 cut(s)	924
PspPI	GGNCC	1 cut(s)	1162
PstNI	CAGNNNCTG	2 cut(s)	538, 593
PsuI	RGATCY	1 cut(s)	1263
PvuII	CAGCTG	2 cut(s)	415, 719
RsaI	GTAC	3 cut(s)	715, 820, 1035
RsaNI	GTAC	3 cut(s)	714, 819, 1034
SaqAI	TTAA	4 cut(s)	30, 302, 321, 1149
SatI	GCNGC	5 cut(s)	43, 231, 249, 413, 560
Sau3AI	GATC	2 cut(s)	599, 1263
Sau96I	GGNCC	1 cut(s)	1162
ScrFI	CCNGG	4 cut(s)	533, 848, 1073, 1307
SduI	GDGCHC	1 cut(s)	1325
SexAI	ACCWGGT	1 cut(s)	846
SfaNI	GCATC	7 cut(s)	493, 754, 1036, 1078, 1161, 1163, 1270
SfcI	CTRYAG	1 cut(s)	579
SinI	GGWCC	1 cut(s)	1162
SphI	GCATGC	1 cut(s)	521
Sse9I	AATT	6 cut(s)	77, 171, 199, 208, 768, 792
SsiI	CCGC	2 cut(s)	248, 1160
SspI	AATATT	3 cut(s)	361, 436, 1249
SspMI	CTAG	3 cut(s)	107, 657, 1041
StyD4I	CCNGG	4 cut(s)	531, 846, 1071, 1305
TaaI	ACNGT	3 cut(s)	319, 455, 1223
TaiI	ACGT	3 cut(s)	646, 1005, 1035
TaqI	TCGA	1 cut(s)	762
TasI	AATT	6 cut(s)	77, 171, 199, 208, 768, 792
TatI	WGTACW	2 cut(s)	713, 818
TauI	GCSGC	1 cut(s)	251
TfiI	GAWTC	3 cut(s)	932, 1068, 1142
Tru1I	TTAA	4 cut(s)	30, 302, 321, 1149
Tru9I	TTAA	4 cut(s)	30, 302, 321, 1149
TscAI	CASTG	3 cut(s)	258, 615, 1131
TseFI	GTSAC	3 cut(s)	237, 313, 390
TseI	GCWGC	4 cut(s)	42, 230, 412, 559
Tsp45I	GTSAC	3 cut(s)	237, 313, 390
TspDTI	ATGAA	5 cut(s)	16, 759, 868, 1011, 1290
TspGWI	ACGGA	1 cut(s)	886
TspRI	CASTG	3 cut(s)	258, 615, 1131
Van91I	CCANNNNNTGG	1 cut(s)	853
VpaK11BI	GGWCC	1 cut(s)	1162
VspI	ATTAAT	1 cut(s)	1149
XapI	RAATTY	1 cut(s)	208
XceI	RCATGY	1 cut(s)	521
XmiI	GTMKAC	1 cut(s)	399
XspI	CTAG	3 cut(s)	107, 657, 1041
Zsp2I	ATGCAT	1 cut(s)	1156

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.