Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr17

Orthogroup ID

OG0009613

Physical Location & Seq

Genomic Coordinates Reverse (-)

347809 .. 352099

Gene Structure 4291 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD17G1004100.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1344 bp

ATGGGGGAGTGGGTCGTTGGAGCTTTCATTAACCTTTTTGGCAGCATTGCCATCAACTTTGGAACTAACCTTCTCAAATTGGGGCATAACGAGAGAGAGAGACATTCAATACTAGAAAGTGATGGAGGAAATGGAAAGCTTCCTTTGAAGCCTATTATACACTATCAGACATGGAGAGTTGGCTTTTTATTTTTTGCTCTTGGTAATTGCCTAAATTTTGTATCCTTTGGATATGCTGCTCAGTCACTTCTTGCGGCACTGGGTTCTGTTCAGTTTGTATCCAACATTGCCTTTGCTTACTTTGTGTTAAACAAAATGGTGACTGTAAAGGTAATGGTTGCCACAGCCTTTATCGTTATTGGGAATATTTTTCTTGTTGCTTTTGGCAACCACCAGTCACCTGTATACACACCTGAACAGCTGGCCGAGAAATACAGCAATATTGCATTCCTATTTTACTGTATGATCTTGGTTTTAGTTGTTGCCTTGCATCACTCCATTTACAGGAGAGGAGAGCTTCTGCATGCTGTTTCTGGCCAGGATCTGAGACCCTATTGGCATATGCTGCTTCCTTTTTCCTATGCTATAGTTTCAGGTGCTGTTGGATCATTCTCAGTGTTGTTTGCAAAATCTCTATCTAACCTGCTACGTTTGGCCATGTCTAGCAGTTATCAGTTACATAGCTGGTTCACATACTCCATGCTCCTTTTATTTCTAAGTACAGCTGGATTTTGGGTATCAGTTATGGCTCGTTTGAATGAAGGATTGTCATTTTTCGATGCAATTCTTATTGTTCCTATGTTTCAGATTGCTTGGACATTCTTTTCCATTTGTACAGGATTTGTATATTTTCAAGAATACCAGGTATTAGATGCACTAAGGACAACAATGTTCATACTGGGAATGATGTCTGTGTTCGTAGGCATTACTTTGCTGGCACCTGATGATTCCAGAGGTGCTGAAGTCAAAGAAAATCCATCTTTAGTTTCTGTGGTGTCTTCAAGCATTCCAAAAGACATGGGCAGGTTTGCTGTTTCATCTGAAGATGTACAAATTAGAGACACACGATCATTTCTGCAAGGAATCCTGGTGAAGATTTCAGATGCGATAGTGAAGGCAAAGACTGCTTGTGCATTGTCACTGGGATTTGGAGATGATTCAATCAATGCATCTGCTGTCCTCGTGATGCCTATGGTGTCATCAAAGATAACGGGCTTTAGAGGAAATGGGTTTGACCGCGCCAAGATTTTCTCCATGAGAAACTCTGGTTGGACCAAGATGTCCATGGATGAAGATGCTACAAAAATGCTGGAGACAAACCCCGTGCTCTCTGAGAGCCCGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0005769 GO:0005886 GO:0006810 GO:0006811 GO:0006812 GO:0008150 GO:0012505 GO:0015693 GO:0016020 GO:0030001 GO:0031410 GO:0031982 GO:0043226 GO:0043227 GO:0043229 GO:0044424 GO:0044444 GO:0044464 GO:0051179 GO:0051234 GO:0070838 GO:0071944 GO:0072511 GO:0097708

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Mg_trans_NIPA

Protein Analysis

448

Amino Acids

49.41

Weight (kDa)

8.25

Isoelectric Point (pI)

37.18

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Mg_trans_NIPA	PF05653	6 - 313	9e-21	Magnesium transporter NIPA

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009613)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G26670 AT3G26670 AT3G26670 AT3G26670
fragaria_vesca	FvH4_6g54450
malus_domestica	MD09G1001000.v1.1 MD17G1004100.v1.1
prunus_persica	Prupe.3G315100_v2.0.a1 Prupe.3G315100_v2.0.a1 Prupe.3G315100_v2.0.a1 Prupe.3G315100_v2.0.a1
pyrus_communis	pycom17g00080
rosa_chinensis	RchiOBHm_Chr2g0176711
rosa_laevigata	RLG00000022438
rosa_multiflora	Rmu_ssc0000468.1_g000006
rosa_roxburghii	Rroxscaffold_2G00076230
rosa_rugosa	Rorug02G0597800 Rorug02G0598000
rosa_samantha	Rh2AG675200 Rh2BG686400 Rh2DG700500
rosa_wichuraiana	Rw2G055420

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	1279
Acc36I	ACCTGC	2 cut(s)	651, 1014
AccB1I	GGYRCC	1 cut(s)	937
AccI	GTMKAC	1 cut(s)	405
AccII	CGCG	1 cut(s)	1239
AciI	CCGC	2 cut(s)	254, 1237
AclWI	GGATC	2 cut(s)	549, 613
AcoI	YGGCCR	3 cut(s)	423, 535, 654
AcsI	RAATTY	1 cut(s)	214
AcuI	CTGAAG	2 cut(s)	981, 1062
AfaI	GTAC	3 cut(s)	721, 835, 1050
AfiI	CCNNNNNNNGG	1 cut(s)	504
AgsI	TTSAA	6 cut(s)	108, 148, 757, 854, 1002, 1161
AjnI	CCWGG	3 cut(s)	537, 861, 1086
AjuI	GAANNNNNNNTTGG	2 cut(s)	1252, 1284
AluBI	AGCT	6 cut(s)	23, 139, 421, 517, 684, 725
AluI	AGCT	6 cut(s)	23, 139, 421, 517, 684, 725
Alw21I	GWGCWC	1 cut(s)	1329
Alw26I	GTCTC	4 cut(s)	94, 541, 1053, 1307
AlwI	GGATC	2 cut(s)	549, 613
AlwNI	CAGNNNCTG	2 cut(s)	544, 599
AoxI	GGCC	3 cut(s)	423, 535, 654
ApeKI	GCWGC	3 cut(s)	42, 236, 565
ApoI	RAATTY	1 cut(s)	214
AspLEI	GCGC	1 cut(s)	1241
AspS9I	GGNCC	1 cut(s)	1272
AsuHPI	GGTGA	3 cut(s)	331, 390, 1102
AvaII	GGWCC	1 cut(s)	1272
BalI	TGGCCA	2 cut(s)	537, 656
BanI	GGYRCC	1 cut(s)	937
BanII	GRGCYC	1 cut(s)	1340
BauI	CACGAG	1 cut(s)	1181
BbsI	GAAGAC	1 cut(s)	990
Bbv12I	GWGCWC	1 cut(s)	1329
BbvI	GCAGC	3 cut(s)	54, 223, 552
BccI	CCATC	3 cut(s)	59, 116, 985
BciT130I	CCWGG	3 cut(s)	539, 863, 1088
BciVI	GTATCC	2 cut(s)	232, 289
BcoDI	GTCTC	4 cut(s)	94, 541, 1053, 1307
BfaI	CTAG	2 cut(s)	113, 663
BfmI	CTRYAG	1 cut(s)	585
BfuAI	ACCTGC	2 cut(s)	651, 1014
BfuI	GTATCC	2 cut(s)	232, 289
BisI	GCNGC	4 cut(s)	43, 237, 255, 566
BlsI	GCNGC	4 cut(s)	44, 238, 256, 567
Bme1390I	CCNGG	3 cut(s)	539, 863, 1088
Bme18I	GGWCC	1 cut(s)	1272
BmgT120I	GGNCC	1 cut(s)	1272
BmiI	GGNNCC	1 cut(s)	939
BmrFI	CCNGG	3 cut(s)	539, 863, 1088
BmrI	ACTGGG	3 cut(s)	269, 908, 1151
BmsI	GCATC	7 cut(s)	499, 769, 862, 1093, 1176, 1178, 1285
BmuI	ACTGGG	3 cut(s)	269, 908, 1151
BpiI	GAAGAC	1 cut(s)	990
BpmI	CTGGAG	1 cut(s)	1331
BsaI	GGTCTC	1 cut(s)	541
BsaJI	CCNNGG	1 cut(s)	1284
Bsc4I	CCNNNNNNNGG	1 cut(s)	504
Bse1I	ACTGG	4 cut(s)	264, 394, 903, 1146
Bse3DI	GCAATG	2 cut(s)	45, 285
BseBI	CCWGG	3 cut(s)	539, 863, 1088
BseDI	CCNNGG	1 cut(s)	1284
BseGI	GGATG	1 cut(s)	1294
BseLI	CCNNNNNNNGG	1 cut(s)	504
BseMI	GCAATG	2 cut(s)	45, 285
BseMII	CTCAG	4 cut(s)	254, 536, 627, 1323
BseNI	ACTGG	4 cut(s)	264, 394, 903, 1146
BseRI	GAGGAG	1 cut(s)	525
BseXI	GCAGC	3 cut(s)	54, 223, 552
Bsh1236I	CGCG	1 cut(s)	1239
BshFI	GGCC	3 cut(s)	425, 537, 656
BshNI	GGYRCC	1 cut(s)	937
BsiHKAI	GWGCWC	1 cut(s)	1329
BslI	CCNNNNNNNGG	1 cut(s)	504
BsmAI	GTCTC	4 cut(s)	94, 541, 1053, 1307
BsmI	GAATGC	2 cut(s)	446, 1005
BsnI	GGCC	3 cut(s)	425, 537, 656
Bso31I	GGTCTC	1 cut(s)	541
Bsp1286I	GDGCHC	2 cut(s)	1329, 1340
Bsp1407I	TGTACA	2 cut(s)	833, 1048
Bsp143I	GATC	4 cut(s)	465, 541, 605, 1067
Bsp19I	CCATGG	1 cut(s)	1284
BspACI	CCGC	2 cut(s)	254, 1237
BspANI	GGCC	3 cut(s)	425, 537, 656
BspCNI	CTCAG	4 cut(s)	253, 537, 626, 1324
BspFNI	CGCG	1 cut(s)	1239
BspLI	GGNNCC	1 cut(s)	939
BspMI	ACCTGC	2 cut(s)	651, 1014
BspPI	GGATC	2 cut(s)	549, 613
BspT107I	GGYRCC	1 cut(s)	937
BspTNI	GGTCTC	1 cut(s)	541
BsrDI	GCAATG	2 cut(s)	45, 285
BsrGI	TGTACA	2 cut(s)	833, 1048
BsrI	ACTGG	4 cut(s)	264, 394, 903, 1146
BssECI	CCNNGG	1 cut(s)	1284
BssMI	GATC	4 cut(s)	465, 541, 605, 1067
BssNAI	GTATAC	1 cut(s)	406
BssSI	CACGAG	1 cut(s)	1181
BssT1I	CCWWGG	1 cut(s)	1284
Bst1107I	GTATAC	1 cut(s)	406
Bst2BI	CACGAG	1 cut(s)	1181
Bst2UI	CCWGG	3 cut(s)	539, 863, 1088
Bst4CI	ACNGT	2 cut(s)	325, 461
BstAPI	GCANNNNNTGC	2 cut(s)	565, 1124
BstAUI	TGTACA	2 cut(s)	833, 1048
BstC8I	GCNNGC	3 cut(s)	423, 525, 936
BstDEI	CTNAG	6 cut(s)	240, 545, 613, 716, 878, 1332
BstDSI	CCRYGG	1 cut(s)	1284
BstF5I	GGATG	1 cut(s)	1294
BstFNI	CGCG	1 cut(s)	1239
BstHHI	GCGC	1 cut(s)	1241
BstKTI	GATC	4 cut(s)	468, 544, 608, 1070
BstMAI	GTCTC	4 cut(s)	94, 541, 1053, 1307
BstMBI	GATC	4 cut(s)	465, 541, 605, 1067
BstMWI	GCNNNNNNNGC	2 cut(s)	565, 1124
BstNI	CCWGG	3 cut(s)	539, 863, 1088
BstNSI	RCATGY	1 cut(s)	527
BstSCI	CCNGG	3 cut(s)	537, 861, 1086
BstSFI	CTRYAG	1 cut(s)	585
BstUI	CGCG	1 cut(s)	1239
BstV1I	GCAGC	3 cut(s)	54, 223, 552
BstV2I	GAAGAC	1 cut(s)	990
BstX2I	RGATCY	1 cut(s)	541
BstYI	RGATCY	1 cut(s)	541
BstZ17I	GTATAC	1 cut(s)	406
BsuI	GTATCC	2 cut(s)	232, 289
BsuRI	GGCC	3 cut(s)	425, 537, 656
BtgI	CCRYGG	1 cut(s)	1284
BtsCI	GGATG	1 cut(s)	1294
BtsIMutI	CAGTG	3 cut(s)	257, 621, 1139
BveI	ACCTGC	2 cut(s)	651, 1014
Cac8I	GCNNGC	3 cut(s)	423, 525, 936
CaiI	CAGNNNCTG	2 cut(s)	544, 599
CfoI	GCGC	1 cut(s)	1241
Cfr13I	GGNCC	1 cut(s)	1272
CsiI	ACCWGGT	1 cut(s)	861
Csp6I	GTAC	3 cut(s)	720, 834, 1049
CviAII	CATG	7 cut(s)	171, 524, 658, 700, 1018, 1255, 1285
CviQI	GTAC	3 cut(s)	720, 834, 1049
DdeI	CTNAG	6 cut(s)	240, 545, 613, 716, 878, 1332
DpnI	GATC	4 cut(s)	467, 543, 607, 1069
DpnII	GATC	4 cut(s)	465, 541, 605, 1067
DrdI	GACNNNNNNGTC	1 cut(s)	1279
DseDI	GACNNNNNNGTC	1 cut(s)	1279
EaeI	YGGCCR	3 cut(s)	423, 535, 654
Eco130I	CCWWGG	1 cut(s)	1284
Eco24I	GRGCYC	1 cut(s)	1340
Eco31I	GGTCTC	1 cut(s)	541
Eco47I	GGWCC	1 cut(s)	1272
Eco57I	CTGAAG	2 cut(s)	981, 1062
EcoRII	CCWGG	3 cut(s)	537, 861, 1086
EcoT14I	CCWWGG	1 cut(s)	1284
EcoT22I	ATGCAT	1 cut(s)	1171
EcoT38I	GRGCYC	1 cut(s)	1340
ErhI	CCWWGG	1 cut(s)	1284
FaeI	CATG	7 cut(s)	174, 527, 661, 703, 1021, 1258, 1288
FatI	CATG	7 cut(s)	170, 523, 657, 699, 1017, 1254, 1284
FauNDI	CATATG	1 cut(s)	561
FblI	GTMKAC	1 cut(s)	405
Fnu4HI	GCNGC	4 cut(s)	43, 237, 255, 566
FokI	GGATG	1 cut(s)	1301
FriOI	GRGCYC	1 cut(s)	1340
Fsp4HI	GCNGC	4 cut(s)	43, 237, 255, 566
FspBI	CTAG	2 cut(s)	113, 663
GlaI	GCGC	1 cut(s)	1240
GluI	GCNGC	4 cut(s)	43, 237, 255, 566
GsuI	CTGGAG	1 cut(s)	1331
HaeIII	GGCC	3 cut(s)	425, 537, 656
HhaI	GCGC	1 cut(s)	1241
Hin1II	CATG	7 cut(s)	174, 527, 661, 703, 1021, 1258, 1288
Hin6I	GCGC	1 cut(s)	1239
HinP1I	GCGC	1 cut(s)	1239
HindIII	AAGCTT	1 cut(s)	137
HinfI	GANTC	3 cut(s)	947, 1083, 1157
HphI	GGTGA	3 cut(s)	331, 390, 1102
Hpy166II	GTNNAC	2 cut(s)	406, 690
Hpy188I	TCNGA	6 cut(s)	168, 546, 807, 1042, 1102, 1333
Hpy188III	TCNNGA	3 cut(s)	854, 951, 1183
Hpy8I	GTNNAC	2 cut(s)	406, 690
HpyAV	CCTTC	3 cut(s)	80, 755, 1108
HpyCH4III	ACNGT	2 cut(s)	325, 461
HpyCH4IV	ACGT	1 cut(s)	649
HpyCH4V	TGCA	9 cut(s)	446, 490, 523, 626, 782, 875, 1078, 1133, 1169
HpyF10VI	GCNNNNNNNGC	2 cut(s)	565, 1124
HpyF3I	CTNAG	6 cut(s)	240, 545, 613, 716, 878, 1332
HpySE526I	ACGT	1 cut(s)	649
Hsp92II	CATG	7 cut(s)	174, 527, 661, 703, 1021, 1258, 1288
HspAI	GCGC	1 cut(s)	1239
Kzo9I	GATC	4 cut(s)	465, 541, 605, 1067
LmnI	GCTCC	2 cut(s)	20, 708
Lsp1109I	GCAGC	3 cut(s)	54, 223, 552
LweI	GCATC	7 cut(s)	499, 769, 862, 1093, 1176, 1178, 1285
MabI	ACCWGGT	1 cut(s)	861
MaeI	CTAG	2 cut(s)	113, 663
MaeII	ACGT	1 cut(s)	649
MaeIII	GTNAC	5 cut(s)	243, 319, 396, 675, 1137
MalI	GATC	4 cut(s)	467, 543, 607, 1069
MboI	GATC	4 cut(s)	465, 541, 605, 1067
MboII	GAAGA	4 cut(s)	990, 1055, 1105, 1304
MflI	RGATCY	1 cut(s)	541
MhlI	GDGCHC	2 cut(s)	1329, 1340
MlsI	TGGCCA	2 cut(s)	537, 656
MluCI	AATT	5 cut(s)	77, 205, 214, 783, 1053
MluNI	TGGCCA	2 cut(s)	537, 656
MmeI	TCCRAC	3 cut(s)	306, 583, 1250
MnlI	CCTC	5 cut(s)	119, 503, 947, 1190, 1214
Mox20I	TGGCCA	2 cut(s)	537, 656
Mph1103I	ATGCAT	1 cut(s)	1171
MscI	TGGCCA	2 cut(s)	537, 656
MseI	TTAA	2 cut(s)	30, 308
Msp20I	TGGCCA	2 cut(s)	537, 656
MspA1I	CMGCKG	2 cut(s)	421, 725
MspR9I	CCNGG	3 cut(s)	539, 863, 1088
Mva1269I	GAATGC	2 cut(s)	446, 1005
MvaI	CCWGG	3 cut(s)	539, 863, 1088
MvnI	CGCG	1 cut(s)	1239
MwoI	GCNNNNNNNGC	2 cut(s)	565, 1124
NcoI	CCATGG	1 cut(s)	1284
NdeI	CATATG	1 cut(s)	561
NdeII	GATC	4 cut(s)	465, 541, 605, 1067
NlaIII	CATG	7 cut(s)	174, 527, 661, 703, 1021, 1258, 1288
NlaIV	GGNNCC	1 cut(s)	939
NmeAIII	GCCGAG	1 cut(s)	451
NmuCI	GTSAC	4 cut(s)	243, 319, 396, 1137
NsiI	ATGCAT	1 cut(s)	1171
NspI	RCATGY	1 cut(s)	527
PaeI	GCATGC	1 cut(s)	527
PctI	GAATGC	2 cut(s)	446, 1005
PfeI	GAWTC	3 cut(s)	947, 1083, 1157
PkrI	GCNGC	4 cut(s)	44, 238, 256, 567
Psp6I	CCWGG	3 cut(s)	537, 861, 1086
PspGI	CCWGG	3 cut(s)	537, 861, 1086
PspN4I	GGNNCC	1 cut(s)	939
PspPI	GGNCC	1 cut(s)	1272
PstNI	CAGNNNCTG	2 cut(s)	544, 599
PsuI	RGATCY	1 cut(s)	541
PvuII	CAGCTG	2 cut(s)	421, 725
RsaI	GTAC	3 cut(s)	721, 835, 1050
RsaNI	GTAC	3 cut(s)	720, 834, 1049
SaqAI	TTAA	2 cut(s)	30, 308
SatI	GCNGC	4 cut(s)	43, 237, 255, 566
Sau3AI	GATC	4 cut(s)	465, 541, 605, 1067
Sau96I	GGNCC	1 cut(s)	1272
ScrFI	CCNGG	3 cut(s)	539, 863, 1088
SduI	GDGCHC	2 cut(s)	1329, 1340
SexAI	ACCWGGT	1 cut(s)	861
SfaNI	GCATC	7 cut(s)	499, 769, 862, 1093, 1176, 1178, 1285
SfcI	CTRYAG	1 cut(s)	585
SinI	GGWCC	1 cut(s)	1272
SphI	GCATGC	1 cut(s)	527
Sse9I	AATT	5 cut(s)	77, 205, 214, 783, 1053
SsiI	CCGC	2 cut(s)	254, 1237
SspI	AATATT	2 cut(s)	367, 442
SspMI	CTAG	2 cut(s)	113, 663
StyD4I	CCNGG	3 cut(s)	537, 861, 1086
StyI	CCWWGG	1 cut(s)	1284
TaaI	ACNGT	2 cut(s)	325, 461
TaiI	ACGT	1 cut(s)	652
TaqI	TCGA	1 cut(s)	777
TasI	AATT	5 cut(s)	77, 205, 214, 783, 1053
TatI	WGTACW	3 cut(s)	719, 833, 1048
TauI	GCSGC	1 cut(s)	257
TfiI	GAWTC	3 cut(s)	947, 1083, 1157
Tru1I	TTAA	2 cut(s)	30, 308
Tru9I	TTAA	2 cut(s)	30, 308
TscAI	CASTG	3 cut(s)	264, 621, 1146
TseFI	GTSAC	4 cut(s)	243, 319, 396, 1137
TseI	GCWGC	3 cut(s)	42, 236, 565
Tsp45I	GTSAC	4 cut(s)	243, 319, 396, 1137
TspDTI	ATGAA	5 cut(s)	16, 774, 883, 1026, 1305
TspRI	CASTG	3 cut(s)	264, 621, 1146
VpaK11BI	GGWCC	1 cut(s)	1272
XapI	RAATTY	1 cut(s)	214
XceI	RCATGY	1 cut(s)	527
XcmI	CCANNNNNNNNNTGG	1 cut(s)	1282
XmiI	GTMKAC	1 cut(s)	405
XspI	CTAG	2 cut(s)	113, 663
Zsp2I	ATGCAT	1 cut(s)	1171

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.