Rorug02G0597800

Acts as a Mg(2 ) transporter. Can also transport other divalent cations such as Fe(2 ), Sr(2 ), Ba(2 ), Mn(2 ) and Co(2 ) but to a much less extent than Mg(2 )

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000002
Physical Location & Seq
Forward (+)
71823729 .. 71824595
867 bp
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UTR
Exon/CDS
Intron
Rorug02G0597800.1

Sequence Viewer

Length: 627 bp
ATGGAAGGAACTGAGTTGATTAAAGATGTAGCTGGCAGGAAAAGAGTGCTTGTCGTTCTTGATGATGTGAACAAACTAGACCAATTAAATGCACTTGCTAGGAGCCGGGAGTGGTTTGGCTCAGGAAGCAGAATAGTGATAACTACTAGAGATCCACAGCTGCTAAGTGTACTTGAAGTTGATAATGTATATGGGACGCAAGGCATAGATGTTATCAAGACACAGTTTCAGCAGAACCTTCAGATGATTAAAGACCTAGAGGAGCCTATTAGAAGGTCATATGTTCAGGCTCGTGATAAAGAAAGGTCTCTTATTGCTGAAATAGAAGCAATACGGAGAAAGAACAATGCTCAGGCGCAAATTATAGCAGAGCTGCAGCAAAATTCGAATTCCAGTTTCCCCTTGTATGCATTAGACTCGGCAACAGATGTTCTACTGGATGGAAGAGGGCCTGAAAATTTTGATGGATATGATGATTACAAAATCCTGCTCAGTTTTGTTCCTGAGAATGAGATGATAATTTGGGGTGCTAATGTCAATCATGAGTTGAAGGGAACGATGCAATTTCTTAATGTTAGATTCGGGGATTTCAATGATGCAGTGAGCAGTGAATCGTCCAGGCATTAA

Protein Analysis

208

Amino Acids

23.6

Weight (kDa)

4.89

Isoelectric Point (pI)

41.31

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 1 cut(s) 146
AcsI RAATTY 3 cut(s) 382, 388, 457
AcuI CTGAAG 1 cut(s) 224
AfaI GTAC 1 cut(s) 171
AgsI TTSAA 3 cut(s) 176, 550, 592
AjnI CCWGG 1 cut(s) 617
AluBI AGCT 3 cut(s) 32, 160, 373
AluI AGCT 3 cut(s) 32, 160, 373
Alw26I GTCTC 1 cut(s) 312
AlwI GGATC 1 cut(s) 146
AoxI GGCC 1 cut(s) 449
ApeKI GCWGC 3 cut(s) 160, 373, 376
ApoI RAATTY 3 cut(s) 382, 388, 457
AspLEI GCGC 1 cut(s) 358
AspS9I GGNCC 1 cut(s) 449
AsuC2I CCSGG 1 cut(s) 107
AsuII TTCGAA 1 cut(s) 386
BauI CACGAG 1 cut(s) 291
BbvI GCAGC 3 cut(s) 147, 360, 388
BccI CCATC 2 cut(s) 434, 458
BcgI CGANNNNNNTGC 2 cut(s) 399, 433
BciT130I CCWGG 1 cut(s) 619
BcnI CCSGG 1 cut(s) 107
BcoDI GTCTC 1 cut(s) 312
BfaI CTAG 4 cut(s) 77, 99, 147, 257
BfmI CTRYAG 1 cut(s) 374
BisI GCNGC 3 cut(s) 161, 374, 377
BlsI GCNGC 3 cut(s) 162, 375, 378
Bme1390I CCNGG 2 cut(s) 107, 619
BmgT120I GGNCC 1 cut(s) 449
BmiI GGNNCC 2 cut(s) 104, 264
BmrFI CCNGG 2 cut(s) 107, 619
BmsI GCATC 2 cut(s) 549, 586
Bpu10I CCTNAGC 2 cut(s) 121, 351
Bpu14I TTCGAA 1 cut(s) 386
BpuMI CCSGG 1 cut(s) 107
BsaI GGTCTC 1 cut(s) 312
Bse1I ACTGG 2 cut(s) 393, 441
BseBI CCWGG 1 cut(s) 619
BseGI GGATG 1 cut(s) 445
BseMII CTCAG 4 cut(s) 135, 365, 495, 505
BseNI ACTGG 2 cut(s) 393, 441
BseRI GAGGAG 1 cut(s) 275
BseXI GCAGC 3 cut(s) 147, 360, 388
BshFI GGCC 1 cut(s) 451
BsiSI CCGG 1 cut(s) 106
BslFI GGGAC 1 cut(s) 208
BsmAI GTCTC 1 cut(s) 312
BsmFI GGGAC 1 cut(s) 208
BsnI GGCC 1 cut(s) 451
Bso31I GGTCTC 1 cut(s) 312
Bsp119I TTCGAA 1 cut(s) 386
Bsp143I GATC 1 cut(s) 151
BspANI GGCC 1 cut(s) 451
BspCNI CTCAG 5 cut(s) 4, 134, 364, 496, 504
BspHI TCATGA 1 cut(s) 541
BspLI GGNNCC 2 cut(s) 104, 264
BspMAI CTGCAG 1 cut(s) 378
BspPI GGATC 1 cut(s) 146
BspT104I TTCGAA 1 cut(s) 386
BspTNI GGTCTC 1 cut(s) 312
BsrI ACTGG 2 cut(s) 393, 441
BssMI GATC 1 cut(s) 151
BssSI CACGAG 1 cut(s) 291
Bst2BI CACGAG 1 cut(s) 291
Bst2UI CCWGG 1 cut(s) 619
Bst4CI ACNGT 1 cut(s) 225
Bst6I CTCTTC 1 cut(s) 439
BstBI TTCGAA 1 cut(s) 386
BstC8I GCNNGC 1 cut(s) 34
BstDEI CTNAG 6 cut(s) 12, 121, 164, 351, 491, 504
BstF5I GGATG 1 cut(s) 445
BstHHI GCGC 1 cut(s) 358
BstKTI GATC 1 cut(s) 154
BstMAI GTCTC 1 cut(s) 312
BstMBI GATC 1 cut(s) 151
BstMWI GCNNNNNNNGC 1 cut(s) 126
BstNI CCWGG 1 cut(s) 619
BstSCI CCNGG 2 cut(s) 105, 617
BstSFI CTRYAG 1 cut(s) 374
BstV1I GCAGC 3 cut(s) 147, 360, 388
BstX2I RGATCY 1 cut(s) 151
BstYI RGATCY 1 cut(s) 151
BsuRI GGCC 1 cut(s) 451
BtsCI GGATG 1 cut(s) 445
BtsI GCAGTG 2 cut(s) 606, 613
BtsIMutI CAGTG 2 cut(s) 606, 613
Cac8I GCNNGC 1 cut(s) 34
CciI TCATGA 1 cut(s) 541
CfoI GCGC 1 cut(s) 358
Cfr13I GGNCC 1 cut(s) 449
CseI GACGC 1 cut(s) 205
Csp6I GTAC 1 cut(s) 170
CviAII CATG 1 cut(s) 542
CviJI RGCY 8 cut(s) 32, 105, 120, 160, 265, 290, 373, 451
CviKI_1 RGCY 8 cut(s) 32, 105, 120, 160, 265, 290, 373, 451
CviQI GTAC 1 cut(s) 170
DdeI CTNAG 6 cut(s) 12, 121, 164, 351, 491, 504
DpnI GATC 1 cut(s) 153
DpnII GATC 1 cut(s) 151
Eam1104I CTCTTC 1 cut(s) 439
EarI CTCTTC 1 cut(s) 439
Eco31I GGTCTC 1 cut(s) 312
Eco57I CTGAAG 1 cut(s) 224
EcoO109I RGGNCCY 1 cut(s) 449
EcoRI GAATTC 1 cut(s) 388
EcoRII CCWGG 1 cut(s) 617
EcoT22I ATGCAT 1 cut(s) 412
FaeI CATG 1 cut(s) 545
FaiI YATR 9 cut(s) 190, 192, 206, 280, 282, 365, 408, 471, 543
FaqI GGGAC 1 cut(s) 208
FatI CATG 1 cut(s) 541
FauNDI CATATG 1 cut(s) 280
Fnu4HI GCNGC 3 cut(s) 161, 374, 377
FokI GGATG 1 cut(s) 452
Fsp4HI GCNGC 3 cut(s) 161, 374, 377
FspBI CTAG 4 cut(s) 77, 99, 147, 257
GlaI GCGC 1 cut(s) 357
GluI GCNGC 3 cut(s) 161, 374, 377
HaeIII GGCC 1 cut(s) 451
HapII CCGG 1 cut(s) 106
HgaI GACGC 1 cut(s) 205
HhaI GCGC 1 cut(s) 358
Hin1II CATG 1 cut(s) 545
Hin6I GCGC 1 cut(s) 356
HinP1I GCGC 1 cut(s) 356
HinfI GANTC 3 cut(s) 416, 579, 611
HpaII CCGG 1 cut(s) 106
Hpy166II GTNNAC 2 cut(s) 70, 170
Hpy188I TCNGA 1 cut(s) 243
Hpy188III TCNNGA 6 cut(s) 59, 123, 217, 293, 503, 542
Hpy8I GTNNAC 2 cut(s) 70, 170
HpyAV CCTTC 3 cut(s) 248, 267, 544
HpyCH4III ACNGT 1 cut(s) 225
HpyCH4V TGCA 5 cut(s) 92, 376, 410, 562, 599
HpyF10VI GCNNNNNNNGC 1 cut(s) 126
HpyF3I CTNAG 6 cut(s) 12, 121, 164, 351, 491, 504
Hsp92II CATG 1 cut(s) 545
HspAI GCGC 1 cut(s) 356
Kzo9I GATC 1 cut(s) 151
LmnI GCTCC 2 cut(s) 102, 262
Lsp1109I GCAGC 3 cut(s) 147, 360, 388
LweI GCATC 2 cut(s) 549, 586
MaeI CTAG 4 cut(s) 77, 99, 147, 257
MalI GATC 1 cut(s) 153
MboI GATC 1 cut(s) 151
MboII GAAGA 1 cut(s) 456
MflI RGATCY 1 cut(s) 151
MluCI AATT 7 cut(s) 83, 360, 382, 388, 457, 519, 563
MlyI GAGTC 1 cut(s) 410
MnlI CCTC 2 cut(s) 253, 440
Mph1103I ATGCAT 1 cut(s) 412
MseI TTAA 5 cut(s) 21, 86, 249, 570, 625
MspA1I CMGCKG 1 cut(s) 160
MspI CCGG 1 cut(s) 106
MspR9I CCNGG 2 cut(s) 107, 619
MvaI CCWGG 1 cut(s) 619
MwoI GCNNNNNNNGC 1 cut(s) 126
NciI CCSGG 1 cut(s) 107
NdeI CATATG 1 cut(s) 280
NdeII GATC 1 cut(s) 151
NlaIII CATG 1 cut(s) 545
NlaIV GGNNCC 2 cut(s) 104, 264
NmeAIII GCCGAG 1 cut(s) 398
NsiI ATGCAT 1 cut(s) 412
NspV TTCGAA 1 cut(s) 386
PagI TCATGA 1 cut(s) 541
PfeI GAWTC 2 cut(s) 579, 611
PkrI GCNGC 3 cut(s) 162, 375, 378
PleI GAGTC 1 cut(s) 410
PpsI GAGTC 1 cut(s) 410
Psp6I CCWGG 1 cut(s) 617
PspGI CCWGG 1 cut(s) 617
PspN4I GGNNCC 2 cut(s) 104, 264
PspPI GGNCC 1 cut(s) 449
PstI CTGCAG 1 cut(s) 378
PsuI RGATCY 1 cut(s) 151
PvuII CAGCTG 1 cut(s) 160
RsaI GTAC 1 cut(s) 171
RsaNI GTAC 1 cut(s) 170
SaqAI TTAA 5 cut(s) 21, 86, 249, 570, 625
SatI GCNGC 3 cut(s) 161, 374, 377
Sau3AI GATC 1 cut(s) 151
Sau96I GGNCC 1 cut(s) 449
SchI GAGTC 1 cut(s) 410
ScrFI CCNGG 2 cut(s) 107, 619
SetI ASST 7 cut(s) 34, 162, 240, 258, 278, 308, 375
SfaNI GCATC 2 cut(s) 549, 586
SfcI CTRYAG 1 cut(s) 374
SfuI TTCGAA 1 cut(s) 386
Sse9I AATT 7 cut(s) 83, 360, 382, 388, 457, 519, 563
SspMI CTAG 4 cut(s) 77, 99, 147, 257
StyD4I CCNGG 2 cut(s) 105, 617
TaaI ACNGT 1 cut(s) 225
TaqI TCGA 1 cut(s) 386
TasI AATT 7 cut(s) 83, 360, 382, 388, 457, 519, 563
TatI WGTACW 1 cut(s) 169
TfiI GAWTC 2 cut(s) 579, 611
Tru1I TTAA 5 cut(s) 21, 86, 249, 570, 625
Tru9I TTAA 5 cut(s) 21, 86, 249, 570, 625
TscAI CASTG 2 cut(s) 606, 613
TseI GCWGC 3 cut(s) 160, 373, 376
TspGWI ACGGA 1 cut(s) 349
TspRI CASTG 2 cut(s) 606, 613
XapI RAATTY 3 cut(s) 382, 388, 457
XspI CTAG 4 cut(s) 77, 99, 147, 257
Zsp2I ATGCAT 1 cut(s) 412
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.