Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0012823

Physical Location & Seq

Genomic Coordinates Reverse (-)

9984947 .. 9986738

Gene Structure 1792 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT3G27080.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 609 bp

ATGGATACGGAAACTGAGTTCGATAGGATACTATTGTTCGAACAAATTCGTCAAGACGCCGAAAATACCTACAAGTCAAATCCTTTAGATGCCGATAATCTGACTAGATGGGGAGGAGTTTTACTCGAGTTATCTCAGTTTCATAGCATCTCAGATGCAAAGCAAATGATTCAAGAGGCCATCACAAAGTTTGAAGAGGCATTGTTGATTGACCCAAAGAAAGATGAAGCGGTTTGGTGTATTGGGAATGCATACACTTCATTTGCGTTTCTGACTCCTGACGAGACTGAAGCTAAACATAACTTTGACTTAGCTACTCAGTTCTTTCAACAAGCTGTGGATGAGCAACCAGATAATACACACTACCTGAAATCACTCGAAATGACGGCCAAGGCTCCACAGCTGCACGCAGAAGCTTACAAACAAGGCTTAGGCTCACAACCAATGGGTCGCGTTGAAGCTCCAGCACCGCCGAGCTCAAAGGCAGTGAAGAATAAGAAAAGTAGTGATGCCAAGTATGATGCTATGGGTTGGGTGATTCTAGCCATTGGTGTTGTTGCTTGGATCAGTTTCGCGAAAGCTAATGTGCCTGTCTCTCCTCCTCGTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005740 GO:0005741 GO:0005742 GO:0005743 GO:0005744 GO:0006605 GO:0006626 GO:0006810 GO:0006839 GO:0006886 GO:0006996 GO:0007005 GO:0008104 GO:0008150 GO:0008320 GO:0008565 GO:0009987 GO:0015031 GO:0015399 GO:0015405 GO:0015450 GO:0015833 GO:0016020 GO:0016043 GO:0019866 GO:0019867 GO:0022804 GO:0022857 GO:0022884 GO:0031090 GO:0031966 GO:0031967 GO:0031968 GO:0031975 GO:0032991 GO:0033036 GO:0033365 GO:0034613 GO:0042886 GO:0042887 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044429 GO:0044444 GO:0044446 GO:0044455 GO:0044464 GO:0045184 GO:0046907 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0055085 GO:0070585 GO:0070727 GO:0071702 GO:0071705 GO:0071806 GO:0071840 GO:0072594 GO:0072655 GO:0098588 GO:0098796 GO:0098798 GO:0098799 GO:0098800 GO:0098805 GO:1904680

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

TOM20_plant

Protein Analysis

202

Amino Acids

22.57

Weight (kDa)

4.94

Isoelectric Point (pI)

43.69

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
TOM20_plant	PF06552	7 - 193	1.2e-104	Plant specific mitochondrial import receptor subunit TOM20

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Image

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Publication-ready

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Orthologous Genes (Group: OG0012823)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G27080 AT5G40930 AT5G40930
fragaria_vesca	FvH4_6g17110 FvH4_6g53520
malus_domestica	MD09G1010900.v1.1
prunus_persica	Prupe.3G306200_v2.0.a1
pyrus_communis	pycom111g00910
rosa_chinensis	RchiOBHm_Chr2g0175551
rosa_laevigata	RLG00000022338
rosa_multiflora	Rmu_sc0008219.1_g000004 Rmu_sc0013970.1_g000005
rosa_rugosa	Rorug02G0586500
rosa_samantha	Rh2AG665300 Rh2BG676100 Rh2CG639300 Rh2DG690100
rosa_wichuraiana	Rw2G054540

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	2 cut(s)	453, 575
AciI	CCGC	2 cut(s)	230, 470
AclWI	GGATC	1 cut(s)	572
AcoI	YGGCCR	1 cut(s)	387
AcsI	RAATTY	1 cut(s)	45
AcuI	CTGAAG	1 cut(s)	309
AcyI	GRCGYC	1 cut(s)	57
AgsI	TTSAA	4 cut(s)	173, 194, 329, 458
AloI	GAACNNNNNNTCC	1 cut(s)	34
AluBI	AGCT	8 cut(s)	293, 314, 335, 403, 416, 461, 477, 581
AluI	AGCT	8 cut(s)	293, 314, 335, 403, 416, 461, 477, 581
Alw21I	GWGCWC	1 cut(s)	479
Alw26I	GTCTC	2 cut(s)	278, 598
AlwI	GGATC	1 cut(s)	572
Ama87I	CYCGRG	1 cut(s)	125
AoxI	GGCC	2 cut(s)	177, 387
ApeKI	GCWGC	1 cut(s)	403
ApoI	RAATTY	1 cut(s)	45
Asp700I	GAANNNNTTC	1 cut(s)	45
AsuHPI	GGTGA	1 cut(s)	547
AsuII	TTCGAA	1 cut(s)	39
AvaI	CYCGRG	1 cut(s)	125
BaeI	ACNNNNGTAYC	2 cut(s)	20, 53
BanII	GRGCYC	1 cut(s)	479
Bbv12I	GWGCWC	1 cut(s)	479
BbvI	GCAGC	1 cut(s)	390
BccI	CCATC	2 cut(s)	102, 188
BceAI	ACGGC	1 cut(s)	402
BciVI	GTATCC	1 cut(s)	21
BcoDI	GTCTC	2 cut(s)	278, 598
BfaI	CTAG	2 cut(s)	105, 542
BfuI	GTATCC	1 cut(s)	21
BisI	GCNGC	1 cut(s)	404
BlsI	GCNGC	1 cut(s)	405
BmeT110I	CYCGRG	1 cut(s)	125
BmiI	GGNNCC	1 cut(s)	396
BmsI	GCATC	5 cut(s)	79, 145, 156, 499, 511
BplI	GAGNNNNNCTC	2 cut(s)	108, 140
BpmI	CTGGAG	1 cut(s)	447
Bpu10I	CCTNAGC	1 cut(s)	430
Bpu14I	TTCGAA	1 cut(s)	39
BsaHI	GRCGYC	1 cut(s)	57
BsaJI	CCNNGG	1 cut(s)	390
BseDI	CCNNGG	1 cut(s)	390
BseGI	GGATG	1 cut(s)	346
BseMII	CTCAG	4 cut(s)	6, 149, 165, 332
BseRI	GAGGAG	3 cut(s)	129, 588, 591
BseXI	GCAGC	1 cut(s)	390
BsgI	GTGCAG	1 cut(s)	389
Bsh1236I	CGCG	2 cut(s)	453, 575
BshFI	GGCC	2 cut(s)	179, 389
BsiHKAI	GWGCWC	1 cut(s)	479
BsiHKCI	CYCGRG	1 cut(s)	125
BsmAI	GTCTC	2 cut(s)	278, 598
BsmI	GAATGC	1 cut(s)	253
BsnI	GGCC	2 cut(s)	179, 389
BsoBI	CYCGRG	1 cut(s)	125
Bsp119I	TTCGAA	1 cut(s)	39
Bsp1286I	GDGCHC	1 cut(s)	479
Bsp143I	GATC	1 cut(s)	564
Bsp68I	TCGCGA	1 cut(s)	575
BspACI	CCGC	2 cut(s)	230, 470
BspANI	GGCC	2 cut(s)	179, 389
BspCNI	CTCAG	4 cut(s)	7, 148, 164, 331
BspFNI	CGCG	2 cut(s)	453, 575
BspLI	GGNNCC	1 cut(s)	396
BspPI	GGATC	1 cut(s)	572
BspT104I	TTCGAA	1 cut(s)	39
BssECI	CCNNGG	1 cut(s)	390
BssMI	GATC	1 cut(s)	564
BssNI	GRCGYC	1 cut(s)	57
BssT1I	CCWWGG	1 cut(s)	390
Bst6I	CTCTTC	1 cut(s)	189
BstACI	GRCGYC	1 cut(s)	57
BstBI	TTCGAA	1 cut(s)	39
BstC8I	GCNNGC	1 cut(s)	408
BstDEI	CTNAG	6 cut(s)	15, 135, 151, 310, 318, 430
BstF5I	GGATG	1 cut(s)	346
BstFNI	CGCG	2 cut(s)	453, 575
BstKTI	GATC	1 cut(s)	567
BstMAI	GTCTC	2 cut(s)	278, 598
BstMBI	GATC	1 cut(s)	564
BstUI	CGCG	2 cut(s)	453, 575
BstV1I	GCAGC	1 cut(s)	390
BsuI	GTATCC	1 cut(s)	21
BsuRI	GGCC	2 cut(s)	179, 389
BtsCI	GGATG	1 cut(s)	346
BtsI	GCAGTG	1 cut(s)	492
BtsIMutI	CAGTG	1 cut(s)	492
BtuMI	TCGCGA	1 cut(s)	575
Cac8I	GCNNGC	1 cut(s)	408
CseI	GACGC	1 cut(s)	65
DdeI	CTNAG	6 cut(s)	15, 135, 151, 310, 318, 430
DpnI	GATC	1 cut(s)	566
DpnII	GATC	1 cut(s)	564
EaeI	YGGCCR	1 cut(s)	387
Eam1104I	CTCTTC	1 cut(s)	189
EarI	CTCTTC	1 cut(s)	189
Ecl136II	GAGCTC	1 cut(s)	477
Eco130I	CCWWGG	1 cut(s)	390
Eco24I	GRGCYC	1 cut(s)	479
Eco53kI	GAGCTC	1 cut(s)	477
Eco57I	CTGAAG	1 cut(s)	309
Eco88I	CYCGRG	1 cut(s)	125
EcoICRI	GAGCTC	1 cut(s)	477
EcoT14I	CCWWGG	1 cut(s)	390
EcoT22I	ATGCAT	1 cut(s)	253
EcoT38I	GRGCYC	1 cut(s)	479
ErhI	CCWWGG	1 cut(s)	390
FaiI	YATR	5 cut(s)	144, 253, 300, 519, 527
Fnu4HI	GCNGC	1 cut(s)	404
FokI	GGATG	1 cut(s)	353
FriOI	GRGCYC	1 cut(s)	479
Fsp4HI	GCNGC	1 cut(s)	404
FspBI	CTAG	2 cut(s)	105, 542
GluI	GCNGC	1 cut(s)	404
GsuI	CTGGAG	1 cut(s)	447
HaeIII	GGCC	2 cut(s)	179, 389
HgaI	GACGC	1 cut(s)	65
Hin1I	GRCGYC	1 cut(s)	57
HindIII	AAGCTT	1 cut(s)	414
HinfI	GANTC	3 cut(s)	169, 274, 538
HphI	GGTGA	1 cut(s)	547
Hpy188I	TCNGA	3 cut(s)	102, 154, 273
Hpy188III	TCNNGA	4 cut(s)	53, 173, 278, 574
HpyCH4V	TGCA	3 cut(s)	158, 251, 406
HpyF3I	CTNAG	6 cut(s)	15, 135, 151, 310, 318, 430
Hsp92I	GRCGYC	1 cut(s)	57
Kzo9I	GATC	1 cut(s)	564
LmnI	GCTCC	2 cut(s)	400, 466
LpnPI	CCDG	5 cut(s)	291, 363, 380, 477, 603
Lsp1109I	GCAGC	1 cut(s)	390
LweI	GCATC	5 cut(s)	79, 145, 156, 499, 511
MaeI	CTAG	2 cut(s)	105, 542
MalI	GATC	1 cut(s)	566
MboI	GATC	1 cut(s)	564
MboII	GAAGA	2 cut(s)	206, 502
MhlI	GDGCHC	1 cut(s)	479
MluCI	AATT	1 cut(s)	45
MlyI	GAGTC	1 cut(s)	268
MnlI	CCTC	4 cut(s)	107, 169, 190, 609
Mph1103I	ATGCAT	1 cut(s)	253
MroXI	GAANNNNTTC	1 cut(s)	45
MseI	TTAA	1 cut(s)	607
MspA1I	CMGCKG	1 cut(s)	403
Mva1269I	GAATGC	1 cut(s)	253
MvnI	CGCG	2 cut(s)	453, 575
NdeII	GATC	1 cut(s)	564
NlaIV	GGNNCC	1 cut(s)	396
NmeAIII	GCCGAG	1 cut(s)	498
NruI	TCGCGA	1 cut(s)	575
NsiI	ATGCAT	1 cut(s)	253
NspV	TTCGAA	1 cut(s)	39
PaeR7I	CTCGAG	1 cut(s)	125
PctI	GAATGC	1 cut(s)	253
PdmI	GAANNNNTTC	1 cut(s)	45
PfeI	GAWTC	2 cut(s)	169, 538
PkrI	GCNGC	1 cut(s)	405
PleI	GAGTC	1 cut(s)	268
PpsI	GAGTC	1 cut(s)	268
Psp124BI	GAGCTC	1 cut(s)	479
PspN4I	GGNNCC	1 cut(s)	396
PspXI	VCTCGAGB	1 cut(s)	125
PvuII	CAGCTG	1 cut(s)	403
RruI	TCGCGA	1 cut(s)	575
SacI	GAGCTC	1 cut(s)	479
SaqAI	TTAA	1 cut(s)	607
SatI	GCNGC	1 cut(s)	404
Sau3AI	GATC	1 cut(s)	564
SchI	GAGTC	1 cut(s)	268
SduI	GDGCHC	1 cut(s)	479
SfaNI	GCATC	5 cut(s)	79, 145, 156, 499, 511
Sfr274I	CTCGAG	1 cut(s)	125
SfuI	TTCGAA	1 cut(s)	39
SlaI	CTCGAG	1 cut(s)	125
SmlI	CTYRAG	1 cut(s)	125
SmoI	CTYRAG	1 cut(s)	125
Sse9I	AATT	1 cut(s)	45
SsiI	CCGC	2 cut(s)	230, 470
SspMI	CTAG	2 cut(s)	105, 542
SstI	GAGCTC	1 cut(s)	479
StyI	CCWWGG	1 cut(s)	390
TaqI	TCGA	4 cut(s)	21, 39, 126, 378
TasI	AATT	1 cut(s)	45
TfiI	GAWTC	2 cut(s)	169, 538
Tru1I	TTAA	1 cut(s)	607
Tru9I	TTAA	1 cut(s)	607
TscAI	CASTG	1 cut(s)	492
TseI	GCWGC	1 cut(s)	403
TspDTI	ATGAA	3 cut(s)	131, 240, 249
TspGWI	ACGGA	1 cut(s)	23
TspRI	CASTG	1 cut(s)	492
XapI	RAATTY	1 cut(s)	45
XhoI	CTCGAG	1 cut(s)	125
XmnI	GAANNNNTTC	1 cut(s)	45
XspI	CTAG	2 cut(s)	105, 542
Zsp2I	ATGCAT	1 cut(s)	253

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.