Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp03

Orthogroup ID

OG0012823

Physical Location & Seq

Genomic Coordinates Forward (+)

26789051 .. 26791112

Gene Structure 2062 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.3G306200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 639 bp

ATGGATATGCAGCAAAACGACTTCGATCGGATCCTCTTCTTCGAACACTCCCGTAAGACCTCCGAAGCCACCTACACTAAGAATCCTCTCGATGCCGGTAACTTGACGAGATGGGCTGGAGCTCTACTAGAGTTGTCTCAGTTTCAGAATGTCGTAGAGTCAAACAAGATGATTCAAGATGCAATTTCAAAGCTGGAGGAGGCATTGTCGATTAATCCTAAGAAACATGAGGCTCTTTGGTGCCTGGGAAATGCTCATACTACTCGTGCATTTTTTAATCCGGACCAGAACGAGGCAAATCGTGGTTTTGATAAAGCGTCTCAGTATTTTCAGCAAGCTCTTGACGAGGATCCAGGAAATGAAGTCTATCGAAAGTCTTTGGAAGTGGCTGCCAAGGCCCCGCAATTGCACTTGGAATTCCAAAAGCATGGTTTTGGTCAACAGGTGATGGAGGCCGCTGCTGCTGCTGGACCTTCTACTTCATCAGGTGCAAAGGCAACAAAGAAAAGCAAGAGCAGCGATCTCAAGTATGACATATTTGGTTGGATAATCCTTGCTGTCGGAATTGTTGCTTGGTTAGGATTTGCAAAATCCCATCCTCCTCCTCCTCCTCCTCCCCCGCCTCCACGCTTTAGTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005740 GO:0005741 GO:0005742 GO:0005743 GO:0005744 GO:0006605 GO:0006626 GO:0006810 GO:0006839 GO:0006886 GO:0006996 GO:0007005 GO:0008104 GO:0008150 GO:0008320 GO:0008565 GO:0009987 GO:0015031 GO:0015399 GO:0015405 GO:0015450 GO:0015833 GO:0016020 GO:0016043 GO:0019866 GO:0019867 GO:0022804 GO:0022857 GO:0022884 GO:0031090 GO:0031966 GO:0031967 GO:0031968 GO:0031975 GO:0032991 GO:0033036 GO:0033365 GO:0034613 GO:0042886 GO:0042887 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044429 GO:0044444 GO:0044446 GO:0044455 GO:0044464 GO:0045184 GO:0046907 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0055085 GO:0070585 GO:0070727 GO:0071702 GO:0071705 GO:0071806 GO:0071840 GO:0072594 GO:0072655 GO:0098588 GO:0098796 GO:0098798 GO:0098799 GO:0098800 GO:0098805 GO:1904680

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

TOM20_plant

Protein Analysis

213

Amino Acids

23.53

Weight (kDa)

6.6

Isoelectric Point (pI)

33.88

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0012823)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G27080 AT5G40930 AT5G40930
fragaria_vesca	FvH4_6g17110 FvH4_6g53520
malus_domestica	MD09G1010900.v1.1
prunus_persica	Prupe.3G306200_v2.0.a1
pyrus_communis	pycom111g00910
rosa_chinensis	RchiOBHm_Chr2g0175551
rosa_laevigata	RLG00000022338
rosa_multiflora	Rmu_sc0008219.1_g000004 Rmu_sc0013970.1_g000005
rosa_rugosa	Rorug02G0586500
rosa_samantha	Rh2AG665300 Rh2BG676100 Rh2CG639300 Rh2DG690100
rosa_wichuraiana	Rw2G054540

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	240
AccIII	TCCGGA	1 cut(s)	280
AciI	CCGC	3 cut(s)	401, 456, 620
AclWI	GGATC	4 cut(s)	25, 38, 344, 357
AcsI	RAATTY	1 cut(s)	416
AfiI	CCNNNNNNNGG	1 cut(s)	292
AgsI	TTSAA	2 cut(s)	176, 189
AjnI	CCWGG	2 cut(s)	243, 352
AjuI	GAANNNNNNNTTGG	2 cut(s)	556, 588
AluBI	AGCT	3 cut(s)	122, 193, 338
AluI	AGCT	3 cut(s)	122, 193, 338
Alw21I	GWGCWC	1 cut(s)	124
Alw26I	GTCTC	2 cut(s)	141, 324
AlwI	GGATC	4 cut(s)	25, 38, 344, 357
Aor13HI	TCCGGA	1 cut(s)	280
AoxI	GGCC	2 cut(s)	396, 453
ApeKI	GCWGC	6 cut(s)	10, 389, 458, 461, 464, 516
ApoI	RAATTY	1 cut(s)	416
AseI	ATTAAT	1 cut(s)	213
AspS9I	GGNCC	3 cut(s)	283, 397, 470
AsuHPI	GGTGA	1 cut(s)	457
AsuII	TTCGAA	1 cut(s)	42
AvaII	GGWCC	2 cut(s)	283, 470
BamHI	GGATCC	2 cut(s)	30, 349
BanI	GGYRCC	1 cut(s)	240
BanII	GRGCYC	1 cut(s)	124
BauI	CACGAG	1 cut(s)	264
Bbv12I	GWGCWC	1 cut(s)	124
BbvI	GCAGC	6 cut(s)	22, 376, 445, 448, 451, 528
BccI	CCATC	3 cut(s)	105, 442, 603
BciT130I	CCWGG	2 cut(s)	245, 354
BcoDI	GTCTC	2 cut(s)	141, 324
BfaI	CTAG	1 cut(s)	128
BisI	GCNGC	7 cut(s)	11, 390, 456, 459, 462, 465, 517
BlsI	GCNGC	7 cut(s)	12, 391, 457, 460, 463, 466, 518
Bme1390I	CCNGG	2 cut(s)	245, 354
Bme18I	GGWCC	2 cut(s)	283, 470
BmgT120I	GGNCC	3 cut(s)	283, 397, 470
BmiI	GGNNCC	4 cut(s)	32, 242, 351, 399
BmrFI	CCNGG	2 cut(s)	245, 354
BmsI	GCATC	2 cut(s)	82, 169
BpmI	CTGGAG	2 cut(s)	138, 215
Bpu14I	TTCGAA	1 cut(s)	42
BpuEI	CTTGAG	1 cut(s)	509
BsaJI	CCNNGG	2 cut(s)	244, 393
BsaWI	WCCGGW	1 cut(s)	280
BsaXI	ACNNNNNCTCC	2 cut(s)	191, 221
Bsc4I	CCNNNNNNNGG	1 cut(s)	292
Bse118I	RCCGGY	1 cut(s)	95
BseAI	TCCGGA	1 cut(s)	280
BseBI	CCWGG	2 cut(s)	245, 354
BseDI	CCNNGG	2 cut(s)	244, 393
BseGI	GGATG	1 cut(s)	595
BseLI	CCNNNNNNNGG	1 cut(s)	292
BseMII	CTCAG	2 cut(s)	152, 335
BseRI	GAGGAG	6 cut(s)	212, 591, 594, 597, 600, 603
BseXI	GCAGC	6 cut(s)	22, 376, 445, 448, 451, 528
Bsh1285I	CGRYCG	1 cut(s)	28
BshFI	GGCC	2 cut(s)	398, 455
BshNI	GGYRCC	1 cut(s)	240
BsiEI	CGRYCG	1 cut(s)	28
BsiHKAI	GWGCWC	1 cut(s)	124
BsiSI	CCGG	2 cut(s)	96, 281
BslI	CCNNNNNNNGG	1 cut(s)	292
BsmAI	GTCTC	2 cut(s)	141, 324
BsmBI	CGTCTC	1 cut(s)	324
BsnI	GGCC	2 cut(s)	398, 455
Bsp119I	TTCGAA	1 cut(s)	42
Bsp1286I	GDGCHC	1 cut(s)	124
Bsp13I	TCCGGA	1 cut(s)	280
Bsp143I	GATC	4 cut(s)	25, 30, 349, 520
BspACI	CCGC	3 cut(s)	401, 456, 620
BspANI	GGCC	2 cut(s)	398, 455
BspCNI	CTCAG	2 cut(s)	151, 334
BspEI	TCCGGA	1 cut(s)	280
BspLI	GGNNCC	4 cut(s)	32, 242, 351, 399
BspPI	GGATC	4 cut(s)	25, 38, 344, 357
BspT104I	TTCGAA	1 cut(s)	42
BspT107I	GGYRCC	1 cut(s)	240
BsrFI	RCCGGY	1 cut(s)	95
BssAI	RCCGGY	1 cut(s)	95
BssECI	CCNNGG	2 cut(s)	244, 393
BssMI	GATC	4 cut(s)	25, 30, 349, 520
BssSI	CACGAG	1 cut(s)	264
BssT1I	CCWWGG	1 cut(s)	393
Bst2BI	CACGAG	1 cut(s)	264
Bst2UI	CCWGG	2 cut(s)	245, 354
Bst6I	CTCTTC	1 cut(s)	41
BstBI	TTCGAA	1 cut(s)	42
BstC8I	GCNNGC	1 cut(s)	336
BstDEI	CTNAG	4 cut(s)	78, 138, 219, 321
BstF5I	GGATG	1 cut(s)	595
BstKTI	GATC	4 cut(s)	28, 33, 352, 523
BstMAI	GTCTC	2 cut(s)	141, 324
BstMBI	GATC	4 cut(s)	25, 30, 349, 520
BstMCI	CGRYCG	1 cut(s)	28
BstMWI	GCNNNNNNNGC	4 cut(s)	395, 461, 464, 516
BstNI	CCWGG	2 cut(s)	245, 354
BstSCI	CCNGG	2 cut(s)	243, 352
BstV1I	GCAGC	6 cut(s)	22, 376, 445, 448, 451, 528
BstX2I	RGATCY	2 cut(s)	30, 349
BstXI	CCANNNNNNTGG	1 cut(s)	428
BstYI	RGATCY	2 cut(s)	30, 349
BsuRI	GGCC	2 cut(s)	398, 455
BtsCI	GGATG	1 cut(s)	595
Cac8I	GCNNGC	1 cut(s)	336
Cfr10I	RCCGGY	1 cut(s)	95
Cfr13I	GGNCC	3 cut(s)	283, 397, 470
CseI	GACGC	1 cut(s)	306
CviAII	CATG	2 cut(s)	227, 428
CviJI	RGCY	9 cut(s)	68, 116, 122, 193, 233, 338, 389, 398, 455
CviKI_1	RGCY	9 cut(s)	68, 116, 122, 193, 233, 338, 389, 398, 455
DdeI	CTNAG	4 cut(s)	78, 138, 219, 321
DpnI	GATC	4 cut(s)	27, 32, 351, 522
DpnII	GATC	4 cut(s)	25, 30, 349, 520
Eam1104I	CTCTTC	1 cut(s)	41
EarI	CTCTTC	1 cut(s)	41
Ecl136II	GAGCTC	1 cut(s)	122
Eco130I	CCWWGG	1 cut(s)	393
Eco24I	GRGCYC	1 cut(s)	124
Eco47I	GGWCC	2 cut(s)	283, 470
Eco53kI	GAGCTC	1 cut(s)	122
EcoICRI	GAGCTC	1 cut(s)	122
EcoO109I	RGGNCCY	1 cut(s)	397
EcoRI	GAATTC	1 cut(s)	416
EcoRII	CCWGG	2 cut(s)	243, 352
EcoT14I	CCWWGG	1 cut(s)	393
EcoT38I	GRGCYC	1 cut(s)	124
ErhI	CCWWGG	1 cut(s)	393
Esp3I	CGTCTC	1 cut(s)	324
FaeI	CATG	2 cut(s)	230, 431
FaiI	YATR	6 cut(s)	8, 228, 258, 429, 531, 536
FatI	CATG	2 cut(s)	226, 427
FauI	CCCGC	2 cut(s)	408, 627
Fnu4HI	GCNGC	7 cut(s)	11, 390, 456, 459, 462, 465, 517
FokI	GGATG	1 cut(s)	582
FriOI	GRGCYC	1 cut(s)	124
Fsp4HI	GCNGC	7 cut(s)	11, 390, 456, 459, 462, 465, 517
FspBI	CTAG	1 cut(s)	128
GluI	GCNGC	7 cut(s)	11, 390, 456, 459, 462, 465, 517
GsuI	CTGGAG	2 cut(s)	138, 215
HaeIII	GGCC	2 cut(s)	398, 455
HapII	CCGG	2 cut(s)	96, 281
HgaI	GACGC	1 cut(s)	306
Hin1II	CATG	2 cut(s)	230, 431
HincII	GTYRAC	1 cut(s)	440
HindII	GTYRAC	1 cut(s)	440
HinfI	GANTC	3 cut(s)	82, 158, 172
HpaII	CCGG	2 cut(s)	96, 281
HphI	GGTGA	1 cut(s)	457
Hpy166II	GTNNAC	1 cut(s)	440
Hpy188I	TCNGA	4 cut(s)	30, 64, 147, 563
Hpy188III	TCNNGA	4 cut(s)	89, 176, 281, 341
Hpy8I	GTNNAC	1 cut(s)	440
HpyAV	CCTTC	1 cut(s)	483
HpyCH4V	TGCA	6 cut(s)	10, 182, 269, 409, 491, 587
HpyF10VI	GCNNNNNNNGC	4 cut(s)	395, 461, 464, 516
HpyF3I	CTNAG	4 cut(s)	78, 138, 219, 321
Hsp92II	CATG	2 cut(s)	230, 431
Kpn2I	TCCGGA	1 cut(s)	280
Kzo9I	GATC	4 cut(s)	25, 30, 349, 520
LmnI	GCTCC	1 cut(s)	119
Lsp1109I	GCAGC	6 cut(s)	22, 376, 445, 448, 451, 528
LweI	GCATC	2 cut(s)	82, 169
MaeI	CTAG	1 cut(s)	128
MaeIII	GTNAC	1 cut(s)	98
MalI	GATC	4 cut(s)	27, 32, 351, 522
MboI	GATC	4 cut(s)	25, 30, 349, 520
MboII	GAAGA	2 cut(s)	28, 31
MfeI	CAATTG	1 cut(s)	404
MflI	RGATCY	2 cut(s)	30, 349
MhlI	GDGCHC	1 cut(s)	124
MluCI	AATT	4 cut(s)	183, 404, 416, 564
MlyI	GAGTC	1 cut(s)	167
MmeI	TCCRAC	2 cut(s)	524, 541
MroI	TCCGGA	1 cut(s)	280
MseI	TTAA	2 cut(s)	213, 276
MspA1I	CMGCKG	1 cut(s)	458
MspI	CCGG	2 cut(s)	96, 281
MspR9I	CCNGG	2 cut(s)	245, 354
MunI	CAATTG	1 cut(s)	404
MvaI	CCWGG	2 cut(s)	245, 354
MwoI	GCNNNNNNNGC	4 cut(s)	395, 461, 464, 516
NdeII	GATC	4 cut(s)	25, 30, 349, 520
NlaIII	CATG	2 cut(s)	230, 431
NlaIV	GGNNCC	4 cut(s)	32, 242, 351, 399
NspV	TTCGAA	1 cut(s)	42
PfeI	GAWTC	2 cut(s)	82, 172
PfoI	TCCNGGA	1 cut(s)	352
PkrI	GCNGC	7 cut(s)	12, 391, 457, 460, 463, 466, 518
Ple19I	CGATCG	1 cut(s)	28
PleI	GAGTC	1 cut(s)	166
PpsI	GAGTC	1 cut(s)	166
PshBI	ATTAAT	1 cut(s)	213
Psp124BI	GAGCTC	1 cut(s)	124
Psp6I	CCWGG	2 cut(s)	243, 352
PspGI	CCWGG	2 cut(s)	243, 352
PspN4I	GGNNCC	4 cut(s)	32, 242, 351, 399
PspPI	GGNCC	3 cut(s)	283, 397, 470
PsuI	RGATCY	2 cut(s)	30, 349
PvuI	CGATCG	1 cut(s)	28
SacI	GAGCTC	1 cut(s)	124
SaqAI	TTAA	2 cut(s)	213, 276
SatI	GCNGC	7 cut(s)	11, 390, 456, 459, 462, 465, 517
Sau3AI	GATC	4 cut(s)	25, 30, 349, 520
Sau96I	GGNCC	3 cut(s)	283, 397, 470
SchI	GAGTC	1 cut(s)	167
ScrFI	CCNGG	2 cut(s)	245, 354
SduI	GDGCHC	1 cut(s)	124
SetI	ASST	8 cut(s)	62, 74, 124, 195, 340, 447, 475, 490
SfaNI	GCATC	2 cut(s)	82, 169
SfuI	TTCGAA	1 cut(s)	42
SinI	GGWCC	2 cut(s)	283, 470
SmlI	CTYRAG	1 cut(s)	524
SmoI	CTYRAG	1 cut(s)	524
Sse9I	AATT	4 cut(s)	183, 404, 416, 564
SsiI	CCGC	3 cut(s)	401, 456, 620
SspMI	CTAG	1 cut(s)	128
SstI	GAGCTC	1 cut(s)	124
StyD4I	CCNGG	2 cut(s)	243, 352
StyI	CCWWGG	1 cut(s)	393
TaqI	TCGA	5 cut(s)	24, 42, 90, 209, 370
TasI	AATT	4 cut(s)	183, 404, 416, 564
TauI	GCSGC	1 cut(s)	458
TfiI	GAWTC	2 cut(s)	82, 172
Tru1I	TTAA	2 cut(s)	213, 276
Tru9I	TTAA	2 cut(s)	213, 276
TseI	GCWGC	6 cut(s)	10, 389, 458, 461, 464, 516
TspDTI	ATGAA	2 cut(s)	375, 471
VpaK11BI	GGWCC	2 cut(s)	283, 470
VspI	ATTAAT	1 cut(s)	213
XapI	RAATTY	1 cut(s)	416
XspI	CTAG	1 cut(s)	128

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.