Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb6

Orthogroup ID

OG0012823

Physical Location & Seq

Genomic Coordinates Reverse (-)

11062140 .. 11066219

Gene Structure 4080 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_6g17110.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 234 bp

ATGTCAAAGCCAAGATCCAGTATCATACTCAACAAAGCACTTGCCCCGGGTTTGCATGTGGAAATCTATAGCCGTGGTTTTGGTCAACAGATGACGGGAACTGCTGAAGGGCCTTCTACTTCCTCTAGTACAAAGGCTGCAAAGAACAAGAACAGTGATTTCAACTATGACATATTTGGTTGGGAATTTTTGCTCTTGAGAGGCATCAATAGAGCACAGCATACAACTAAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005740 GO:0005741 GO:0005742 GO:0005743 GO:0005744 GO:0006605 GO:0006626 GO:0006810 GO:0006839 GO:0006886 GO:0006996 GO:0007005 GO:0008104 GO:0008150 GO:0008320 GO:0008565 GO:0009987 GO:0015031 GO:0015399 GO:0015405 GO:0015450 GO:0015833 GO:0016020 GO:0016043 GO:0019866 GO:0019867 GO:0022804 GO:0022857 GO:0022884 GO:0031090 GO:0031966 GO:0031967 GO:0031968 GO:0031975 GO:0032991 GO:0033036 GO:0033365 GO:0034613 GO:0042886 GO:0042887 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044429 GO:0044444 GO:0044446 GO:0044455 GO:0044464 GO:0045184 GO:0046907 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0055085 GO:0070585 GO:0070727 GO:0071702 GO:0071705 GO:0071806 GO:0071840 GO:0072594 GO:0072655 GO:0098588 GO:0098796 GO:0098798 GO:0098799 GO:0098800 GO:0098805 GO:1904680

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

TOM20_plant

Protein Analysis

78

Amino Acids

8.47

Weight (kDa)

9.99

Isoelectric Point (pI)

47.32

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
TOM20_plant	PF06552	13 - 64	9.2e-11	Plant specific mitochondrial import receptor subunit TOM20

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0012823)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G27080 AT5G40930 AT5G40930
fragaria_vesca	FvH4_6g17110 FvH4_6g53520
malus_domestica	MD09G1010900.v1.1
prunus_persica	Prupe.3G306200_v2.0.a1
pyrus_communis	pycom111g00910
rosa_chinensis	RchiOBHm_Chr2g0175551
rosa_laevigata	RLG00000022338
rosa_multiflora	Rmu_sc0008219.1_g000004 Rmu_sc0013970.1_g000005
rosa_rugosa	Rorug02G0586500
rosa_samantha	Rh2AG665300 Rh2BG676100 Rh2CG639300 Rh2DG690100
rosa_wichuraiana	Rw2G054540

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	1 cut(s)	9
AcsI	RAATTY	1 cut(s)	185
AcuI	CTGAAG	1 cut(s)	126
AfaI	GTAC	1 cut(s)	130
AgsI	TTSAA	1 cut(s)	163
Alw21I	GWGCWC	1 cut(s)	217
AlwI	GGATC	1 cut(s)	9
Ama87I	CYCGRG	1 cut(s)	46
AoxI	GGCC	1 cut(s)	110
ApeKI	GCWGC	1 cut(s)	137
ApoI	RAATTY	1 cut(s)	185
AspS9I	GGNCC	1 cut(s)	110
AsuC2I	CCSGG	2 cut(s)	47, 48
AvaI	CYCGRG	1 cut(s)	46
Bbv12I	GWGCWC	1 cut(s)	217
BbvI	GCAGC	1 cut(s)	124
BceAI	ACGGC	1 cut(s)	57
BcnI	CCSGG	2 cut(s)	47, 48
BfaI	CTAG	1 cut(s)	126
BfmI	CTRYAG	1 cut(s)	67
BisI	GCNGC	1 cut(s)	138
BlsI	GCNGC	1 cut(s)	139
Bme1390I	CCNGG	2 cut(s)	47, 48
BmeT110I	CYCGRG	1 cut(s)	46
BmgT120I	GGNCC	1 cut(s)	110
BmrFI	CCNGG	2 cut(s)	47, 48
BmsI	GCATC	1 cut(s)	213
BpuEI	CTTGAG	1 cut(s)	217
BpuMI	CCSGG	2 cut(s)	47, 48
BsaJI	CCNNGG	3 cut(s)	45, 46, 73
Bse1I	ACTGG	1 cut(s)	18
BseDI	CCNNGG	3 cut(s)	45, 46, 73
BseNI	ACTGG	1 cut(s)	18
BseXI	GCAGC	1 cut(s)	124
BshFI	GGCC	1 cut(s)	112
BsiHKAI	GWGCWC	1 cut(s)	217
BsiHKCI	CYCGRG	1 cut(s)	46
BsiSI	CCGG	1 cut(s)	47
BsnI	GGCC	1 cut(s)	112
BsoBI	CYCGRG	1 cut(s)	46
Bsp1286I	GDGCHC	1 cut(s)	217
Bsp143I	GATC	1 cut(s)	14
BspANI	GGCC	1 cut(s)	112
BspPI	GGATC	1 cut(s)	9
BsrI	ACTGG	1 cut(s)	18
BssECI	CCNNGG	3 cut(s)	45, 46, 73
BssMI	GATC	1 cut(s)	14
Bst4CI	ACNGT	1 cut(s)	155
BstDSI	CCRYGG	1 cut(s)	73
BstKTI	GATC	1 cut(s)	17
BstMBI	GATC	1 cut(s)	14
BstNSI	RCATGY	1 cut(s)	59
BstSCI	CCNGG	2 cut(s)	45, 46
BstSFI	CTRYAG	1 cut(s)	67
BstV1I	GCAGC	1 cut(s)	124
BstX2I	RGATCY	1 cut(s)	14
BstYI	RGATCY	1 cut(s)	14
BsuRI	GGCC	1 cut(s)	112
BtgI	CCRYGG	1 cut(s)	73
BtsIMutI	CAGTG	1 cut(s)	160
Cfr13I	GGNCC	1 cut(s)	110
Cfr9I	CCCGGG	1 cut(s)	46
Csp6I	GTAC	1 cut(s)	129
CviAII	CATG	1 cut(s)	56
CviJI	RGCY	4 cut(s)	10, 72, 112, 137
CviKI_1	RGCY	4 cut(s)	10, 72, 112, 137
CviQI	GTAC	1 cut(s)	129
DpnI	GATC	1 cut(s)	16
DpnII	GATC	1 cut(s)	14
Eco57I	CTGAAG	1 cut(s)	126
Eco88I	CYCGRG	1 cut(s)	46
EcoO109I	RGGNCCY	1 cut(s)	110
FaeI	CATG	1 cut(s)	59
FaiI	YATR	6 cut(s)	26, 57, 69, 168, 173, 222
FatI	CATG	1 cut(s)	55
Fnu4HI	GCNGC	1 cut(s)	138
Fsp4HI	GCNGC	1 cut(s)	138
FspBI	CTAG	1 cut(s)	126
GluI	GCNGC	1 cut(s)	138
HaeIII	GGCC	1 cut(s)	112
HapII	CCGG	1 cut(s)	47
Hin1II	CATG	1 cut(s)	59
HincII	GTYRAC	1 cut(s)	86
HindII	GTYRAC	1 cut(s)	86
HpaII	CCGG	1 cut(s)	47
Hpy166II	GTNNAC	1 cut(s)	86
Hpy188III	TCNNGA	1 cut(s)	196
Hpy8I	GTNNAC	1 cut(s)	86
HpyAV	CCTTC	2 cut(s)	101, 123
HpyCH4III	ACNGT	1 cut(s)	155
HpyCH4V	TGCA	2 cut(s)	55, 140
Hsp92II	CATG	1 cut(s)	59
Kzo9I	GATC	1 cut(s)	14
LpnPI	CCDG	2 cut(s)	31, 60
Lsp1109I	GCAGC	1 cut(s)	124
LweI	GCATC	1 cut(s)	213
MaeI	CTAG	1 cut(s)	126
MalI	GATC	1 cut(s)	16
MboI	GATC	1 cut(s)	14
MflI	RGATCY	1 cut(s)	14
MhlI	GDGCHC	1 cut(s)	217
MluCI	AATT	1 cut(s)	185
MnlI	CCTC	2 cut(s)	133, 194
MspI	CCGG	1 cut(s)	47
MspR9I	CCNGG	2 cut(s)	47, 48
NciI	CCSGG	2 cut(s)	47, 48
NdeII	GATC	1 cut(s)	14
NlaIII	CATG	1 cut(s)	59
NspI	RCATGY	1 cut(s)	59
PkrI	GCNGC	1 cut(s)	139
PspPI	GGNCC	1 cut(s)	110
PsuI	RGATCY	1 cut(s)	14
RsaI	GTAC	1 cut(s)	130
RsaNI	GTAC	1 cut(s)	129
SatI	GCNGC	1 cut(s)	138
Sau3AI	GATC	1 cut(s)	14
Sau96I	GGNCC	1 cut(s)	110
ScrFI	CCNGG	2 cut(s)	47, 48
SduI	GDGCHC	1 cut(s)	217
SfaNI	GCATC	1 cut(s)	213
SfcI	CTRYAG	1 cut(s)	67
SmaI	CCCGGG	1 cut(s)	48
SmlI	CTYRAG	1 cut(s)	196
SmoI	CTYRAG	1 cut(s)	196
Sse9I	AATT	1 cut(s)	185
SspMI	CTAG	1 cut(s)	126
StyD4I	CCNGG	2 cut(s)	45, 46
TaaI	ACNGT	1 cut(s)	155
TasI	AATT	1 cut(s)	185
TatI	WGTACW	1 cut(s)	128
TscAI	CASTG	1 cut(s)	160
TseI	GCWGC	1 cut(s)	137
TspMI	CCCGGG	1 cut(s)	46
TspRI	CASTG	1 cut(s)	160
XapI	RAATTY	1 cut(s)	185
XceI	RCATGY	1 cut(s)	59
XmaI	CCCGGG	1 cut(s)	46
XspI	CTAG	1 cut(s)	126

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.