Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0012823

Physical Location & Seq

Genomic Coordinates Forward (+)

16404457 .. 16406079

Gene Structure 1623 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT5G40930.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 564 bp

ATGGATATGCAGAATGAAAACGAGAGATTGATGGTCTTCGAACATGCTCGCAAAGTAGCAGAAGCAACCTACGTCAAAAACCCTTTAGATGCCGAGAATTTGACGAGATGGGCAGGAGCTTTACTTGAACTATCACAGTTTCAGACAGAGCCAAAGCAGATGATTCTAGAGGCTATTTTGAAGCTGGGAGAGGCCTTGGTCATCGATCCAAAGAAGCATGATGCTCTTTGGTTAATTGGGAATGCTCATCTTTCATTTGGGTTTTTGAGTTCTGATCAGACAGAAGCTAGCGATAACTTTGAGAAAGCTTCTCAGTTCTTTCAACTTGCTGTGGAGGAGCAACCAGAGAGCGAACTCTATCGGAAATCATTGACATTGGCTTCCAAGGCTCCAGAACTACATACAGGCGGCACCGCTGGACCATCATCTAACAGTGCGAAGACGATGAAGCAGAAAAAGACCAGTGAGTTCAAGTATGATGTGTTCGGATGGGTCATCTTAGCCAGTTACGTTGTTGCGTGGATCAGTTTTGCCAATTCTCAGACGCCGGTGTCAAGGCAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005740 GO:0005741 GO:0005742 GO:0005743 GO:0005744 GO:0005773 GO:0005774 GO:0005829 GO:0005840 GO:0006605 GO:0006626 GO:0006810 GO:0006839 GO:0006886 GO:0006996 GO:0007005 GO:0008104 GO:0008150 GO:0008320 GO:0008565 GO:0009987 GO:0015031 GO:0015399 GO:0015405 GO:0015450 GO:0015833 GO:0016020 GO:0016043 GO:0019866 GO:0019867 GO:0022626 GO:0022804 GO:0022857 GO:0022884 GO:0031090 GO:0031966 GO:0031967 GO:0031968 GO:0031975 GO:0032991 GO:0033036 GO:0033365 GO:0034613 GO:0042886 GO:0042887 GO:0043167 GO:0043169 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0044422 GO:0044424 GO:0044425 GO:0044429 GO:0044437 GO:0044444 GO:0044445 GO:0044446 GO:0044455 GO:0044464 GO:0045184 GO:0046872 GO:0046907 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0055085 GO:0070585 GO:0070727 GO:0071702 GO:0071705 GO:0071806 GO:0071840 GO:0072594 GO:0072655 GO:0098588 GO:0098796 GO:0098798 GO:0098799 GO:0098800 GO:0098805 GO:1904680 GO:1990904

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

TOM20_plant

Protein Analysis

187

Amino Acids

20.97

Weight (kDa)

5.43

Isoelectric Point (pI)

35.15

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
TOM20_plant	PF06552	7 - 136	4.9e-69	Plant specific mitochondrial import receptor subunit TOM20

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0012823)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G27080 AT5G40930 AT5G40930
fragaria_vesca	FvH4_6g17110 FvH4_6g53520
malus_domestica	MD09G1010900.v1.1
prunus_persica	Prupe.3G306200_v2.0.a1
pyrus_communis	pycom111g00910
rosa_chinensis	RchiOBHm_Chr2g0175551
rosa_laevigata	RLG00000022338
rosa_multiflora	Rmu_sc0008219.1_g000004 Rmu_sc0013970.1_g000005
rosa_rugosa	Rorug02G0586500
rosa_samantha	Rh2AG665300 Rh2BG676100 Rh2CG639300 Rh2DG690100
rosa_wichuraiana	Rw2G054540

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	550
AccB1I	GGYRCC	1 cut(s)	410
AciI	CCGC	2 cut(s)	408, 414
AclWI	GGATC	2 cut(s)	200, 530
AcsI	RAATTY	1 cut(s)	97
AcyI	GRCGYC	1 cut(s)	545
AgsI	TTSAA	4 cut(s)	128, 181, 323, 472
AluBI	AGCT	4 cut(s)	119, 184, 287, 308
AluI	AGCT	4 cut(s)	119, 184, 287, 308
AlwI	GGATC	2 cut(s)	200, 530
AoxI	GGCC	1 cut(s)	192
ApoI	RAATTY	1 cut(s)	97
AspS9I	GGNCC	1 cut(s)	419
AsuII	TTCGAA	1 cut(s)	39
AsuNHI	GCTAGC	1 cut(s)	287
AvaII	GGWCC	1 cut(s)	419
BanI	GGYRCC	1 cut(s)	410
BbsI	GAAGAC	2 cut(s)	28, 446
BccI	CCATC	4 cut(s)	25, 102, 430, 483
BclI	TGATCA	1 cut(s)	274
BfaI	CTAG	2 cut(s)	167, 288
BisI	GCNGC	1 cut(s)	409
BlsI	GCNGC	1 cut(s)	410
Bme18I	GGWCC	1 cut(s)	419
BmgT120I	GGNCC	1 cut(s)	419
BmiI	GGNNCC	2 cut(s)	390, 412
BmsI	GCATC	2 cut(s)	79, 211
BmtI	GCTAGC	1 cut(s)	291
BpiI	GAAGAC	2 cut(s)	28, 446
BpmI	CTGGAG	1 cut(s)	375
Bpu14I	TTCGAA	1 cut(s)	39
Bsa29I	ATCGAT	1 cut(s)	204
BsaHI	GRCGYC	1 cut(s)	545
BsaJI	CCNNGG	2 cut(s)	195, 384
Bse118I	RCCGGY	1 cut(s)	547
Bse1I	ACTGG	2 cut(s)	462, 504
BseCI	ATCGAT	1 cut(s)	204
BseDI	CCNNGG	2 cut(s)	195, 384
BseGI	GGATG	1 cut(s)	494
BseMII	CTCAG	2 cut(s)	326, 554
BseNI	ACTGG	2 cut(s)	462, 504
BseRI	GAGGAG	1 cut(s)	350
BseYI	CCCAGC	1 cut(s)	184
BshFI	GGCC	1 cut(s)	194
BshNI	GGYRCC	1 cut(s)	410
BshVI	ATCGAT	1 cut(s)	204
BsiSI	CCGG	1 cut(s)	548
BsmI	GAATGC	1 cut(s)	247
BsnI	GGCC	1 cut(s)	194
Bsp119I	TTCGAA	1 cut(s)	39
Bsp143I	GATC	3 cut(s)	205, 274, 522
BspACI	CCGC	2 cut(s)	408, 414
BspANI	GGCC	1 cut(s)	194
BspCNI	CTCAG	2 cut(s)	325, 553
BspDI	ATCGAT	1 cut(s)	204
BspLI	GGNNCC	2 cut(s)	390, 412
BspOI	GCTAGC	1 cut(s)	291
BspPI	GGATC	2 cut(s)	200, 530
BspT104I	TTCGAA	1 cut(s)	39
BspT107I	GGYRCC	1 cut(s)	410
BsrFI	RCCGGY	1 cut(s)	547
BsrI	ACTGG	2 cut(s)	462, 504
BssAI	RCCGGY	1 cut(s)	547
BssECI	CCNNGG	2 cut(s)	195, 384
BssMI	GATC	3 cut(s)	205, 274, 522
BssNI	GRCGYC	1 cut(s)	545
BssT1I	CCWWGG	2 cut(s)	195, 384
Bst4CI	ACNGT	2 cut(s)	138, 434
BstACI	GRCGYC	1 cut(s)	545
BstBI	TTCGAA	1 cut(s)	39
BstC8I	GCNNGC	2 cut(s)	49, 289
BstDEI	CTNAG	3 cut(s)	312, 499, 540
BstF5I	GGATG	1 cut(s)	494
BstKTI	GATC	3 cut(s)	208, 277, 525
BstMBI	GATC	3 cut(s)	205, 274, 522
BstMWI	GCNNNNNNNGC	1 cut(s)	386
BstNSI	RCATGY	1 cut(s)	47
BstV2I	GAAGAC	2 cut(s)	28, 446
Bsu15I	ATCGAT	1 cut(s)	204
BsuRI	GGCC	1 cut(s)	194
BsuTUI	ATCGAT	1 cut(s)	204
BtsCI	GGATG	1 cut(s)	494
BtsIMutI	CAGTG	2 cut(s)	439, 469
Cac8I	GCNNGC	2 cut(s)	49, 289
Cfr10I	RCCGGY	1 cut(s)	547
Cfr13I	GGNCC	1 cut(s)	419
ClaI	ATCGAT	1 cut(s)	204
CseI	GACGC	1 cut(s)	553
CviAII	CATG	2 cut(s)	44, 218
DdeI	CTNAG	3 cut(s)	312, 499, 540
DpnI	GATC	3 cut(s)	207, 276, 524
DpnII	GATC	3 cut(s)	205, 274, 522
DrdI	GACNNNNNNGTC	1 cut(s)	550
DseDI	GACNNNNNNGTC	1 cut(s)	550
Eco130I	CCWWGG	2 cut(s)	195, 384
Eco147I	AGGCCT	1 cut(s)	194
Eco47I	GGWCC	1 cut(s)	419
EcoT14I	CCWWGG	2 cut(s)	195, 384
ErhI	CCWWGG	2 cut(s)	195, 384
FaeI	CATG	2 cut(s)	47, 221
FaiI	YATR	5 cut(s)	8, 45, 219, 402, 477
FatI	CATG	2 cut(s)	43, 217
FbaI	TGATCA	1 cut(s)	274
Fnu4HI	GCNGC	1 cut(s)	409
FokI	GGATG	1 cut(s)	501
Fsp4HI	GCNGC	1 cut(s)	409
FspBI	CTAG	2 cut(s)	167, 288
GluI	GCNGC	1 cut(s)	409
GsaI	CCCAGC	1 cut(s)	188
GsuI	CTGGAG	1 cut(s)	375
HaeIII	GGCC	1 cut(s)	194
HapII	CCGG	1 cut(s)	548
HgaI	GACGC	1 cut(s)	553
Hin1I	GRCGYC	1 cut(s)	545
Hin1II	CATG	2 cut(s)	47, 221
HindIII	AAGCTT	1 cut(s)	306
HinfI	GANTC	1 cut(s)	163
HpaII	CCGG	1 cut(s)	548
Hpy188I	TCNGA	6 cut(s)	144, 274, 279, 363, 488, 543
Hpy188III	TCNNGA	2 cut(s)	167, 392
HpyCH4III	ACNGT	2 cut(s)	138, 434
HpyCH4IV	ACGT	2 cut(s)	72, 510
HpyCH4V	TGCA	1 cut(s)	10
HpyF10VI	GCNNNNNNNGC	1 cut(s)	386
HpyF3I	CTNAG	3 cut(s)	312, 499, 540
HpySE526I	ACGT	2 cut(s)	72, 510
Hsp92I	GRCGYC	1 cut(s)	545
Hsp92II	CATG	2 cut(s)	47, 221
Ksp22I	TGATCA	1 cut(s)	274
Kzo9I	GATC	3 cut(s)	205, 274, 522
LmnI	GCTCC	3 cut(s)	116, 337, 394
LpnPI	CCDG	8 cut(s)	99, 170, 357, 390, 402, 405, 475, 517
LweI	GCATC	2 cut(s)	79, 211
MaeI	CTAG	2 cut(s)	167, 288
MaeII	ACGT	2 cut(s)	72, 510
MaeIII	GTNAC	1 cut(s)	506
MalI	GATC	3 cut(s)	207, 276, 524
MboI	GATC	3 cut(s)	205, 274, 522
MboII	GAAGA	2 cut(s)	28, 451
MluCI	AATT	3 cut(s)	97, 234, 535
MnlI	CCTC	3 cut(s)	163, 184, 328
MseI	TTAA	1 cut(s)	233
MspA1I	CMGCKG	1 cut(s)	416
MspI	CCGG	1 cut(s)	548
Mva1269I	GAATGC	1 cut(s)	247
MwoI	GCNNNNNNNGC	1 cut(s)	386
NdeII	GATC	3 cut(s)	205, 274, 522
NheI	GCTAGC	1 cut(s)	287
NlaIII	CATG	2 cut(s)	47, 221
NlaIV	GGNNCC	2 cut(s)	390, 412
NmeAIII	GCCGAG	1 cut(s)	118
NspI	RCATGY	1 cut(s)	47
NspV	TTCGAA	1 cut(s)	39
PceI	AGGCCT	1 cut(s)	194
PctI	GAATGC	1 cut(s)	247
PfeI	GAWTC	1 cut(s)	163
PkrI	GCNGC	1 cut(s)	410
PspFI	CCCAGC	1 cut(s)	184
PspN4I	GGNNCC	2 cut(s)	390, 412
PspPI	GGNCC	1 cut(s)	419
PsrI	GAACNNNNNNTAC	2 cut(s)	467, 499
SaqAI	TTAA	1 cut(s)	233
SatI	GCNGC	1 cut(s)	409
Sau3AI	GATC	3 cut(s)	205, 274, 522
Sau96I	GGNCC	1 cut(s)	419
SetI	ASST	7 cut(s)	71, 75, 121, 186, 289, 310, 513
SfaNI	GCATC	2 cut(s)	79, 211
SfuI	TTCGAA	1 cut(s)	39
SgrAI	CRCCGGYG	1 cut(s)	547
SinI	GGWCC	1 cut(s)	419
Sse9I	AATT	3 cut(s)	97, 234, 535
SseBI	AGGCCT	1 cut(s)	194
SsiI	CCGC	2 cut(s)	408, 414
SspMI	CTAG	2 cut(s)	167, 288
StuI	AGGCCT	1 cut(s)	194
StyI	CCWWGG	2 cut(s)	195, 384
TaaI	ACNGT	2 cut(s)	138, 434
TaiI	ACGT	2 cut(s)	75, 513
TaqI	TCGA	2 cut(s)	39, 204
TasI	AATT	3 cut(s)	97, 234, 535
TauI	GCSGC	1 cut(s)	411
TfiI	GAWTC	1 cut(s)	163
Tru1I	TTAA	1 cut(s)	233
Tru9I	TTAA	1 cut(s)	233
TscAI	CASTG	2 cut(s)	439, 469
TspDTI	ATGAA	3 cut(s)	30, 243, 461
TspRI	CASTG	2 cut(s)	439, 469
VpaK11BI	GGWCC	1 cut(s)	419
XapI	RAATTY	1 cut(s)	97
XbaI	TCTAGA	1 cut(s)	166
XceI	RCATGY	1 cut(s)	47
XspI	CTAG	2 cut(s)	167, 288

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.