Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb6

Orthogroup ID

OG0012823

Physical Location & Seq

Genomic Coordinates Forward (+)

39212174 .. 39214774

Gene Structure 2601 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_6g53520.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 612 bp

ATGGATTTACAAAACGACTTCGATCGGATGCTCTTCTTCCAGCACGCCTGTATGACCTCCGAAGCTGCTCACGCGGTTAACCCTTCCGATGTTGATAACTTGACAAGGTGGGCTGGAGCTCTCTTGGAGTTATCTCAGTTTCAGGGTGCGCAAGAGTCCAAAATTATGGTCCGAGAGGCAATTTCGAAGCTGGAGAAGGTGCTGGAGATTAATCCTAAGAAACATGATGCTCTTTGGTGTTTGGGAAATGCACATACTACTAATGCCTTTTTGACTCCGGACTCTGAAGAGGCGAATGGATATTTTGATATTGCCGTTGAGTGCTTCAAGAAAGCTGTTGCTGAGGAACCGGGAAATGATCTCTATCGGAAGTCTTTGGAAATGTCTGCTAAGGCCCCGGGATTGCATGTGGAAATCCATAGCCGTGGTTTTGGTCAGCAGTTGACTGGAACTGCTGAAGGGCCTTCTACTTCCTCTAGTACAAAGGCTGCAAAGAACAAGAAGAACAGTGATTTCAACTATGACATGTTTGGTTGGGTAATCCTTGCTGTCGGAATTTGGGCTTGGTTAGGATTTGCAAAATCTAATGTACCTCCCCCACCTCACCAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005740 GO:0005741 GO:0005742 GO:0005743 GO:0005744 GO:0006605 GO:0006626 GO:0006810 GO:0006839 GO:0006886 GO:0006996 GO:0007005 GO:0008104 GO:0008150 GO:0008320 GO:0008565 GO:0009987 GO:0015031 GO:0015399 GO:0015405 GO:0015450 GO:0015833 GO:0016020 GO:0016043 GO:0019866 GO:0019867 GO:0022804 GO:0022857 GO:0022884 GO:0031090 GO:0031966 GO:0031967 GO:0031968 GO:0031975 GO:0032991 GO:0033036 GO:0033365 GO:0034613 GO:0042886 GO:0042887 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044429 GO:0044444 GO:0044446 GO:0044455 GO:0044464 GO:0045184 GO:0046907 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0055085 GO:0070585 GO:0070727 GO:0071702 GO:0071705 GO:0071806 GO:0071840 GO:0072594 GO:0072655 GO:0098588 GO:0098796 GO:0098798 GO:0098799 GO:0098800 GO:0098805 GO:1904680

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

TOM20_plant

Protein Analysis

204

Amino Acids

22.43

Weight (kDa)

5.62

Isoelectric Point (pI)

38.48

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
TOM20_plant	PF06552	7 - 194	3.8e-81	Plant specific mitochondrial import receptor subunit TOM20

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Image

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Publication-ready

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Orthologous Genes (Group: OG0012823)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G27080 AT5G40930 AT5G40930
fragaria_vesca	FvH4_6g17110 FvH4_6g53520
malus_domestica	MD09G1010900.v1.1
prunus_persica	Prupe.3G306200_v2.0.a1
pyrus_communis	pycom111g00910
rosa_chinensis	RchiOBHm_Chr2g0175551
rosa_laevigata	RLG00000022338
rosa_multiflora	Rmu_sc0008219.1_g000004 Rmu_sc0013970.1_g000005
rosa_rugosa	Rorug02G0586500
rosa_samantha	Rh2AG665300 Rh2BG676100 Rh2CG639300 Rh2DG690100
rosa_wichuraiana	Rw2G054540

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	150
AccII	CGCG	1 cut(s)	74
AccIII	TCCGGA	1 cut(s)	277
AciI	CCGC	1 cut(s)	74
AcsI	RAATTY	1 cut(s)	555
AcuI	CTGAAG	2 cut(s)	306, 477
AfaI	GTAC	2 cut(s)	481, 591
AflIII	ACRYGT	1 cut(s)	525
AgsI	TTSAA	2 cut(s)	328, 517
AjuI	GAANNNNNNNTTGG	2 cut(s)	547, 579
AluBI	AGCT	4 cut(s)	65, 119, 190, 335
AluI	AGCT	4 cut(s)	65, 119, 190, 335
Alw21I	GWGCWC	1 cut(s)	121
Ama87I	CYCGRG	1 cut(s)	397
Aor13HI	TCCGGA	1 cut(s)	277
AoxI	GGCC	2 cut(s)	393, 461
ApeKI	GCWGC	2 cut(s)	65, 488
ApoI	RAATTY	1 cut(s)	555
ArsI	GACNNNNNNTTYG	2 cut(s)	153, 185
AseI	ATTAAT	1 cut(s)	210
AspLEI	GCGC	1 cut(s)	151
AspS9I	GGNCC	3 cut(s)	169, 394, 461
AsuC2I	CCSGG	3 cut(s)	351, 398, 399
AsuHPI	GGTGA	1 cut(s)	596
AsuII	TTCGAA	1 cut(s)	185
AvaI	CYCGRG	1 cut(s)	397
AvaII	GGWCC	1 cut(s)	169
BanII	GRGCYC	1 cut(s)	121
Bbv12I	GWGCWC	1 cut(s)	121
BbvCI	CCTCAGC	1 cut(s)	342
BbvI	GCAGC	2 cut(s)	52, 475
BceAI	ACGGC	2 cut(s)	299, 408
BcnI	CCSGG	3 cut(s)	351, 398, 399
BfaI	CTAG	1 cut(s)	477
BisI	GCNGC	2 cut(s)	66, 489
BlsI	GCNGC	2 cut(s)	67, 490
Bme1390I	CCNGG	3 cut(s)	351, 398, 399
Bme18I	GGWCC	1 cut(s)	169
BmeT110I	CYCGRG	1 cut(s)	397
BmgT120I	GGNCC	3 cut(s)	169, 394, 461
BmiI	GGNNCC	2 cut(s)	348, 396
BmrFI	CCNGG	3 cut(s)	351, 398, 399
BmsI	GCATC	2 cut(s)	18, 217
BpmI	CTGGAG	3 cut(s)	135, 212, 224
Bpu10I	CCTNAGC	2 cut(s)	342, 390
Bpu14I	TTCGAA	1 cut(s)	185
BpuMI	CCSGG	3 cut(s)	351, 398, 399
BsaBI	GATNNNNATC	1 cut(s)	363
BsaJI	CCNNGG	3 cut(s)	396, 397, 424
BsaWI	WCCGGW	1 cut(s)	277
Bse1I	ACTGG	2 cut(s)	451, 607
Bse8I	GATNNNNATC	1 cut(s)	363
BseAI	TCCGGA	1 cut(s)	277
BseDI	CCNNGG	3 cut(s)	396, 397, 424
BseGI	GGATG	1 cut(s)	33
BseJI	GATNNNNATC	1 cut(s)	363
BseMII	CTCAG	2 cut(s)	149, 333
BseNI	ACTGG	2 cut(s)	451, 607
BseXI	GCAGC	2 cut(s)	52, 475
Bsh1236I	CGCG	1 cut(s)	74
Bsh1285I	CGRYCG	1 cut(s)	25
BshFI	GGCC	2 cut(s)	395, 463
BsiEI	CGRYCG	1 cut(s)	25
BsiHKAI	GWGCWC	1 cut(s)	121
BsiHKCI	CYCGRG	1 cut(s)	397
BsiSI	CCGG	3 cut(s)	278, 350, 398
BsnI	GGCC	2 cut(s)	395, 463
BsoBI	CYCGRG	1 cut(s)	397
Bsp119I	TTCGAA	1 cut(s)	185
Bsp1286I	GDGCHC	1 cut(s)	121
Bsp13I	TCCGGA	1 cut(s)	277
Bsp143I	GATC	2 cut(s)	22, 358
BspACI	CCGC	1 cut(s)	74
BspANI	GGCC	2 cut(s)	395, 463
BspCNI	CTCAG	2 cut(s)	148, 334
BspEI	TCCGGA	1 cut(s)	277
BspFNI	CGCG	1 cut(s)	74
BspLI	GGNNCC	2 cut(s)	348, 396
BspQI	GCTCTTC	1 cut(s)	38
BspT104I	TTCGAA	1 cut(s)	185
BsrI	ACTGG	2 cut(s)	451, 607
BssECI	CCNNGG	3 cut(s)	396, 397, 424
BssMI	GATC	2 cut(s)	22, 358
Bst4CI	ACNGT	1 cut(s)	509
Bst6I	CTCTTC	2 cut(s)	38, 282
BstBI	TTCGAA	1 cut(s)	185
BstC8I	GCNNGC	1 cut(s)	45
BstDEI	CTNAG	4 cut(s)	135, 216, 342, 390
BstDSI	CCRYGG	1 cut(s)	424
BstF5I	GGATG	1 cut(s)	33
BstFNI	CGCG	1 cut(s)	74
BstHHI	GCGC	1 cut(s)	151
BstKTI	GATC	2 cut(s)	25, 361
BstMBI	GATC	2 cut(s)	22, 358
BstMCI	CGRYCG	1 cut(s)	25
BstMWI	GCNNNNNNNGC	1 cut(s)	71
BstNSI	RCATGY	2 cut(s)	410, 529
BstSCI	CCNGG	3 cut(s)	349, 396, 397
BstUI	CGCG	1 cut(s)	74
BstV1I	GCAGC	2 cut(s)	52, 475
BstXI	CCANNNNNNTGG	2 cut(s)	166, 425
BsuRI	GGCC	2 cut(s)	395, 463
BtgI	CCRYGG	1 cut(s)	424
BtsCI	GGATG	1 cut(s)	33
BtsIMutI	CAGTG	1 cut(s)	514
Cac8I	GCNNGC	1 cut(s)	45
CfoI	GCGC	1 cut(s)	151
Cfr13I	GGNCC	3 cut(s)	169, 394, 461
Cfr9I	CCCGGG	1 cut(s)	397
Csp6I	GTAC	2 cut(s)	480, 590
CviAII	CATG	3 cut(s)	224, 407, 526
CviQI	GTAC	2 cut(s)	480, 590
DdeI	CTNAG	4 cut(s)	135, 216, 342, 390
DpnI	GATC	2 cut(s)	24, 360
DpnII	GATC	2 cut(s)	22, 358
Eam1104I	CTCTTC	2 cut(s)	38, 282
EarI	CTCTTC	2 cut(s)	38, 282
Ecl136II	GAGCTC	1 cut(s)	119
Eco24I	GRGCYC	1 cut(s)	121
Eco47I	GGWCC	1 cut(s)	169
Eco53kI	GAGCTC	1 cut(s)	119
Eco57I	CTGAAG	2 cut(s)	306, 477
Eco88I	CYCGRG	1 cut(s)	397
EcoICRI	GAGCTC	1 cut(s)	119
EcoO109I	RGGNCCY	2 cut(s)	394, 461
EcoT38I	GRGCYC	1 cut(s)	121
FaeI	CATG	3 cut(s)	227, 410, 529
FaiI	YATR	8 cut(s)	53, 167, 225, 255, 408, 420, 522, 527
FatI	CATG	3 cut(s)	223, 406, 525
Fnu4HI	GCNGC	2 cut(s)	66, 489
FokI	GGATG	1 cut(s)	40
FriOI	GRGCYC	1 cut(s)	121
Fsp4HI	GCNGC	2 cut(s)	66, 489
FspBI	CTAG	1 cut(s)	477
FspI	TGCGCA	1 cut(s)	150
GlaI	GCGC	1 cut(s)	150
GluI	GCNGC	2 cut(s)	66, 489
GsuI	CTGGAG	3 cut(s)	135, 212, 224
HaeIII	GGCC	2 cut(s)	395, 463
HapII	CCGG	3 cut(s)	278, 350, 398
HhaI	GCGC	1 cut(s)	151
Hin1II	CATG	3 cut(s)	227, 410, 529
Hin6I	GCGC	1 cut(s)	149
HinP1I	GCGC	1 cut(s)	149
HincII	GTYRAC	2 cut(s)	79, 444
HindII	GTYRAC	2 cut(s)	79, 444
HinfI	GANTC	3 cut(s)	155, 274, 281
HpaI	GTTAAC	1 cut(s)	79
HpaII	CCGG	3 cut(s)	278, 350, 398
HphI	GGTGA	1 cut(s)	596
Hpy166II	GTNNAC	2 cut(s)	79, 444
Hpy188I	TCNGA	7 cut(s)	27, 61, 88, 173, 286, 369, 554
Hpy188III	TCNNGA	2 cut(s)	278, 328
Hpy8I	GTNNAC	2 cut(s)	79, 444
HpyAV	CCTTC	4 cut(s)	93, 190, 452, 474
HpyCH4III	ACNGT	1 cut(s)	509
HpyCH4V	TGCA	4 cut(s)	251, 406, 491, 578
HpyF10VI	GCNNNNNNNGC	1 cut(s)	71
HpyF3I	CTNAG	4 cut(s)	135, 216, 342, 390
Hsp92II	CATG	3 cut(s)	227, 410, 529
HspAI	GCGC	1 cut(s)	149
Kpn2I	TCCGGA	1 cut(s)	277
KspAI	GTTAAC	1 cut(s)	79
Kzo9I	GATC	2 cut(s)	22, 358
LguI	GCTCTTC	1 cut(s)	38
LmnI	GCTCC	1 cut(s)	116
Lsp1109I	GCAGC	2 cut(s)	52, 475
LweI	GCATC	2 cut(s)	18, 217
MaeI	CTAG	1 cut(s)	477
MalI	GATC	2 cut(s)	24, 360
MboI	GATC	2 cut(s)	22, 358
MboII	GAAGA	4 cut(s)	25, 28, 299, 514
MhlI	GDGCHC	1 cut(s)	121
MluCI	AATT	3 cut(s)	162, 180, 555
MlyI	GAGTC	3 cut(s)	164, 268, 275
MmeI	TCCRAC	1 cut(s)	532
MnlI	CCTC	7 cut(s)	67, 169, 283, 337, 484, 603, 612
MroI	TCCGGA	1 cut(s)	277
MseI	TTAA	2 cut(s)	78, 210
MslI	CAYNNNNRTG	1 cut(s)	423
MspI	CCGG	3 cut(s)	278, 350, 398
MspR9I	CCNGG	3 cut(s)	351, 398, 399
MvnI	CGCG	1 cut(s)	74
MwoI	GCNNNNNNNGC	1 cut(s)	71
NciI	CCSGG	3 cut(s)	351, 398, 399
NdeII	GATC	2 cut(s)	22, 358
NlaIII	CATG	3 cut(s)	227, 410, 529
NlaIV	GGNNCC	2 cut(s)	348, 396
NsbI	TGCGCA	1 cut(s)	150
NspI	RCATGY	2 cut(s)	410, 529
NspV	TTCGAA	1 cut(s)	185
PciI	ACATGT	1 cut(s)	525
PciSI	GCTCTTC	1 cut(s)	38
PkrI	GCNGC	2 cut(s)	67, 490
Ple19I	CGATCG	1 cut(s)	25
PleI	GAGTC	3 cut(s)	163, 268, 275
PpsI	GAGTC	3 cut(s)	163, 268, 275
PscI	ACATGT	1 cut(s)	525
PshBI	ATTAAT	1 cut(s)	210
Psp124BI	GAGCTC	1 cut(s)	121
PspN4I	GGNNCC	2 cut(s)	348, 396
PspPI	GGNCC	3 cut(s)	169, 394, 461
PvuI	CGATCG	1 cut(s)	25
RsaI	GTAC	2 cut(s)	481, 591
RsaNI	GTAC	2 cut(s)	480, 590
RseI	CAYNNNNRTG	1 cut(s)	423
SacI	GAGCTC	1 cut(s)	121
SapI	GCTCTTC	1 cut(s)	38
SaqAI	TTAA	2 cut(s)	78, 210
SatI	GCNGC	2 cut(s)	66, 489
Sau3AI	GATC	2 cut(s)	22, 358
Sau96I	GGNCC	3 cut(s)	169, 394, 461
SchI	GAGTC	3 cut(s)	164, 268, 275
ScrFI	CCNGG	3 cut(s)	351, 398, 399
SduI	GDGCHC	1 cut(s)	121
SetI	ASST	9 cut(s)	59, 67, 110, 121, 192, 201, 337, 595, 604
SfaNI	GCATC	2 cut(s)	18, 217
SfuI	TTCGAA	1 cut(s)	185
SinI	GGWCC	1 cut(s)	169
SmaI	CCCGGG	1 cut(s)	399
SmiMI	CAYNNNNRTG	1 cut(s)	423
Sse9I	AATT	3 cut(s)	162, 180, 555
SsiI	CCGC	1 cut(s)	74
SspMI	CTAG	1 cut(s)	477
SstI	GAGCTC	1 cut(s)	121
StyD4I	CCNGG	3 cut(s)	349, 396, 397
TaaI	ACNGT	1 cut(s)	509
TaqI	TCGA	2 cut(s)	21, 185
TasI	AATT	3 cut(s)	162, 180, 555
TatI	WGTACW	1 cut(s)	479
Tru1I	TTAA	2 cut(s)	78, 210
Tru9I	TTAA	2 cut(s)	78, 210
TscAI	CASTG	1 cut(s)	514
TseI	GCWGC	2 cut(s)	65, 488
TspMI	CCCGGG	1 cut(s)	397
TspRI	CASTG	1 cut(s)	514
VpaK11BI	GGWCC	1 cut(s)	169
VspI	ATTAAT	1 cut(s)	210
XapI	RAATTY	1 cut(s)	555
XceI	RCATGY	2 cut(s)	410, 529
XmaI	CCCGGG	1 cut(s)	397
XspI	CTAG	1 cut(s)	477

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.