Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2A

Orthogroup ID

OG0012823

Physical Location & Seq

Genomic Coordinates Forward (+)

88038030 .. 88040904

Gene Structure 2875 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2AG665300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 615 bp

ATGGATTTGCAGCACAACGACTTCGATCGGATCCTCTTCTTCGAGCACGCTCGTAAGACCGCCGAAGCTACTCACGCTAAGAACCCTTCCGATGCTGATAACTTGACAAGGTGGGCTGGAGCTCTATTGGAGTTATCTCAATTTCAGAATGTGCAAGAGTCCAAAATTATGATCCAAGATGCAATTTTGAAGCTGGAGGAGGTGTTGGTGCTTAAACCTAAGAAACATGATGCTCTTTGGTGCCTGGGAAATGCACATACTTCTCATGCGTTTTTGACACCGGATGCGGAAGAGGCAAAGGAATATTTTGACACTGCGGCTGAGTACTTCAAGAAAGCTGTTGCTGAGGAACCAGGAAATGATCTCTATCGGAAATCTTTGGAAGTGTCTGCTAAGGCCCCGGAATTGCATGTGGAAATCCATAGGCATGGTTTGGGTCAGCAGGTGACGGGGGCTGCTGATGGGCCTTCTACTTCCTCTGGTACAATGGCTGCAAAGAAAAAGAAGAGCAGCGATCTTAAGTATGACATATTTGGTTGGATAATCCTTGCTGTCGGAATTGTCGCTTGGGTAGGATTTGGGAAATCTAATGTACCTCCCCCGCCTCAGCAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005740 GO:0005741 GO:0005742 GO:0005743 GO:0005744 GO:0006605 GO:0006626 GO:0006810 GO:0006839 GO:0006886 GO:0006996 GO:0007005 GO:0008104 GO:0008150 GO:0008320 GO:0008565 GO:0009987 GO:0015031 GO:0015399 GO:0015405 GO:0015450 GO:0015833 GO:0016020 GO:0016043 GO:0019866 GO:0019867 GO:0022804 GO:0022857 GO:0022884 GO:0031090 GO:0031966 GO:0031967 GO:0031968 GO:0031975 GO:0032991 GO:0033036 GO:0033365 GO:0034613 GO:0042886 GO:0042887 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044429 GO:0044444 GO:0044446 GO:0044455 GO:0044464 GO:0045184 GO:0046907 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0055085 GO:0070585 GO:0070727 GO:0071702 GO:0071705 GO:0071806 GO:0071840 GO:0072594 GO:0072655 GO:0098588 GO:0098796 GO:0098798 GO:0098799 GO:0098800 GO:0098805 GO:1904680

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

TOM20_plant

Protein Analysis

204

Amino Acids

22.59

Weight (kDa)

5.98

Isoelectric Point (pI)

32.84

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
TOM20_plant	PF06552	8 - 195	3.7e-93	Plant specific mitochondrial import receptor subunit TOM20

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0012823)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G27080 AT5G40930 AT5G40930
fragaria_vesca	FvH4_6g17110 FvH4_6g53520
malus_domestica	MD09G1010900.v1.1
prunus_persica	Prupe.3G306200_v2.0.a1
pyrus_communis	pycom111g00910
rosa_chinensis	RchiOBHm_Chr2g0175551
rosa_laevigata	RLG00000022338
rosa_multiflora	Rmu_sc0008219.1_g000004 Rmu_sc0013970.1_g000005
rosa_rugosa	Rorug02G0586500
rosa_samantha	Rh2AG665300 Rh2BG676100 Rh2CG639300 Rh2DG690100
rosa_wichuraiana	Rw2G054540

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	433
Acc36I	ACCTGC	1 cut(s)	433
AccB1I	GGYRCC	1 cut(s)	240
AciI	CCGC	4 cut(s)	60, 287, 317, 602
AclWI	GGATC	3 cut(s)	25, 38, 166
AfaI	GTAC	3 cut(s)	326, 484, 594
AflII	CTTAAG	1 cut(s)	518
AgsI	TTSAA	2 cut(s)	190, 331
AjnI	CCWGG	2 cut(s)	243, 352
AjuI	GAANNNNNNNTTGG	2 cut(s)	550, 582
AluBI	AGCT	4 cut(s)	68, 122, 193, 338
AluI	AGCT	4 cut(s)	68, 122, 193, 338
Alw21I	GWGCWC	2 cut(s)	48, 124
AlwI	GGATC	3 cut(s)	25, 38, 166
AoxI	GGCC	2 cut(s)	396, 464
ApeKI	GCWGC	4 cut(s)	10, 455, 491, 510
AspS9I	GGNCC	2 cut(s)	397, 464
AsuC2I	CCSGG	1 cut(s)	401
AsuHPI	GGTGA	1 cut(s)	457
BamHI	GGATCC	1 cut(s)	30
BanI	GGYRCC	1 cut(s)	240
BanII	GRGCYC	1 cut(s)	124
Bbv12I	GWGCWC	2 cut(s)	48, 124
BbvCI	CCTCAGC	2 cut(s)	345, 606
BbvI	GCAGC	4 cut(s)	22, 442, 478, 522
BccI	CCATC	1 cut(s)	455
BciT130I	CCWGG	2 cut(s)	245, 354
BcnI	CCSGG	1 cut(s)	401
BfrI	CTTAAG	1 cut(s)	518
BfuAI	ACCTGC	1 cut(s)	433
BisI	GCNGC	5 cut(s)	11, 318, 456, 492, 511
BlsI	GCNGC	5 cut(s)	12, 319, 457, 493, 512
BmcAI	AGTACT	1 cut(s)	326
Bme1390I	CCNGG	3 cut(s)	245, 354, 401
BmgT120I	GGNCC	2 cut(s)	397, 464
BmiI	GGNNCC	4 cut(s)	32, 242, 351, 399
BmrFI	CCNGG	3 cut(s)	245, 354, 401
BmsI	GCATC	4 cut(s)	82, 169, 220, 274
BpmI	CTGGAG	2 cut(s)	138, 215
Bpu10I	CCTNAGC	3 cut(s)	345, 393, 606
BpuMI	CCSGG	1 cut(s)	401
BsaBI	GATNNNNATC	1 cut(s)	366
BsaJI	CCNNGG	2 cut(s)	244, 399
BsaWI	WCCGGW	1 cut(s)	280
BsaXI	ACNNNNNCTCC	2 cut(s)	188, 218
Bse8I	GATNNNNATC	1 cut(s)	366
BseBI	CCWGG	2 cut(s)	245, 354
BseDI	CCNNGG	2 cut(s)	244, 399
BseGI	GGATG	1 cut(s)	289
BseJI	GATNNNNATC	1 cut(s)	366
BseMII	CTCAG	2 cut(s)	312, 336
BseRI	GAGGAG	1 cut(s)	212
BseXI	GCAGC	4 cut(s)	22, 442, 478, 522
Bsh1285I	CGRYCG	1 cut(s)	28
BshFI	GGCC	2 cut(s)	398, 466
BshNI	GGYRCC	1 cut(s)	240
BsiEI	CGRYCG	1 cut(s)	28
BsiHKAI	GWGCWC	2 cut(s)	48, 124
BsiSI	CCGG	2 cut(s)	281, 401
BsnI	GGCC	2 cut(s)	398, 466
Bsp1286I	GDGCHC	2 cut(s)	48, 124
Bsp143I	GATC	5 cut(s)	25, 30, 171, 361, 514
BspACI	CCGC	4 cut(s)	60, 287, 317, 602
BspANI	GGCC	2 cut(s)	398, 466
BspCNI	CTCAG	2 cut(s)	313, 337
BspLI	GGNNCC	4 cut(s)	32, 242, 351, 399
BspMI	ACCTGC	1 cut(s)	433
BspPI	GGATC	3 cut(s)	25, 38, 166
BspQI	GCTCTTC	1 cut(s)	500
BspT107I	GGYRCC	1 cut(s)	240
BspTI	CTTAAG	1 cut(s)	518
BssECI	CCNNGG	2 cut(s)	244, 399
BssMI	GATC	5 cut(s)	25, 30, 171, 361, 514
Bst2UI	CCWGG	2 cut(s)	245, 354
Bst6I	CTCTTC	3 cut(s)	41, 285, 500
BstAFI	CTTAAG	1 cut(s)	518
BstC8I	GCNNGC	1 cut(s)	48
BstDEI	CTNAG	6 cut(s)	78, 219, 321, 345, 393, 606
BstF5I	GGATG	1 cut(s)	289
BstKTI	GATC	5 cut(s)	28, 33, 174, 364, 517
BstMBI	GATC	5 cut(s)	25, 30, 171, 361, 514
BstMCI	CGRYCG	1 cut(s)	28
BstMWI	GCNNNNNNNGC	2 cut(s)	74, 293
BstNI	CCWGG	2 cut(s)	245, 354
BstNSI	RCATGY	1 cut(s)	413
BstSCI	CCNGG	3 cut(s)	243, 352, 399
BstV1I	GCAGC	4 cut(s)	22, 442, 478, 522
BstX2I	RGATCY	1 cut(s)	30
BstXI	CCANNNNNNTGG	1 cut(s)	428
BstYI	RGATCY	1 cut(s)	30
BsuRI	GGCC	2 cut(s)	398, 466
BtsCI	GGATG	1 cut(s)	289
BtsI	GCAGTG	1 cut(s)	312
BtsIMutI	CAGTG	1 cut(s)	312
BveI	ACCTGC	1 cut(s)	433
Cac8I	GCNNGC	1 cut(s)	48
Cfr13I	GGNCC	2 cut(s)	397, 464
Csp6I	GTAC	3 cut(s)	325, 483, 593
CviAII	CATG	4 cut(s)	227, 266, 410, 428
CviQI	GTAC	3 cut(s)	325, 483, 593
DdeI	CTNAG	6 cut(s)	78, 219, 321, 345, 393, 606
DpnI	GATC	5 cut(s)	27, 32, 173, 363, 516
DpnII	GATC	5 cut(s)	25, 30, 171, 361, 514
Eam1104I	CTCTTC	3 cut(s)	41, 285, 500
EarI	CTCTTC	3 cut(s)	41, 285, 500
Ecl136II	GAGCTC	1 cut(s)	122
Eco24I	GRGCYC	1 cut(s)	124
Eco53kI	GAGCTC	1 cut(s)	122
EcoICRI	GAGCTC	1 cut(s)	122
EcoO109I	RGGNCCY	1 cut(s)	397
EcoRII	CCWGG	2 cut(s)	243, 352
EcoT38I	GRGCYC	1 cut(s)	124
FaeI	CATG	4 cut(s)	230, 269, 413, 431
FaiI	YATR	9 cut(s)	170, 228, 258, 267, 411, 423, 429, 525, 530
FatI	CATG	4 cut(s)	226, 265, 409, 427
FauI	CCCGC	1 cut(s)	609
Fnu4HI	GCNGC	5 cut(s)	11, 318, 456, 492, 511
FokI	GGATG	1 cut(s)	296
FriOI	GRGCYC	1 cut(s)	124
Fsp4HI	GCNGC	5 cut(s)	11, 318, 456, 492, 511
GluI	GCNGC	5 cut(s)	11, 318, 456, 492, 511
GsuI	CTGGAG	2 cut(s)	138, 215
HaeIII	GGCC	2 cut(s)	398, 466
HapII	CCGG	2 cut(s)	281, 401
Hin1II	CATG	4 cut(s)	230, 269, 413, 431
HinfI	GANTC	1 cut(s)	158
HpaII	CCGG	2 cut(s)	281, 401
HphI	GGTGA	1 cut(s)	457
Hpy188I	TCNGA	5 cut(s)	30, 91, 147, 372, 557
Hpy188III	TCNNGA	1 cut(s)	331
HpyAV	CCTTC	2 cut(s)	96, 477
HpyCH4V	TGCA	6 cut(s)	10, 154, 182, 254, 409, 494
HpyF10VI	GCNNNNNNNGC	2 cut(s)	74, 293
HpyF3I	CTNAG	6 cut(s)	78, 219, 321, 345, 393, 606
Hsp92II	CATG	4 cut(s)	230, 269, 413, 431
Kzo9I	GATC	5 cut(s)	25, 30, 171, 361, 514
LguI	GCTCTTC	1 cut(s)	500
LmnI	GCTCC	1 cut(s)	119
Lsp1109I	GCAGC	4 cut(s)	22, 442, 478, 522
LweI	GCATC	4 cut(s)	82, 169, 220, 274
MaeIII	GTNAC	1 cut(s)	445
MalI	GATC	5 cut(s)	27, 32, 173, 363, 516
MboI	GATC	5 cut(s)	25, 30, 171, 361, 514
MboII	GAAGA	4 cut(s)	28, 31, 302, 517
MflI	RGATCY	1 cut(s)	30
MhlI	GDGCHC	2 cut(s)	48, 124
MluCI	AATT	5 cut(s)	140, 165, 183, 404, 558
MlyI	GAGTC	1 cut(s)	167
MmeI	TCCRAC	2 cut(s)	518, 535
MnlI	CCTC	8 cut(s)	44, 190, 193, 286, 340, 487, 606, 615
MseI	TTAA	2 cut(s)	213, 519
MslI	CAYNNNNRTG	1 cut(s)	426
MspCI	CTTAAG	1 cut(s)	518
MspI	CCGG	2 cut(s)	281, 401
MspR9I	CCNGG	3 cut(s)	245, 354, 401
MvaI	CCWGG	2 cut(s)	245, 354
MwoI	GCNNNNNNNGC	2 cut(s)	74, 293
NciI	CCSGG	1 cut(s)	401
NdeII	GATC	5 cut(s)	25, 30, 171, 361, 514
NlaIII	CATG	4 cut(s)	230, 269, 413, 431
NlaIV	GGNNCC	4 cut(s)	32, 242, 351, 399
NmuCI	GTSAC	1 cut(s)	445
NspI	RCATGY	1 cut(s)	413
PaqCI	CACCTGC	1 cut(s)	433
PciSI	GCTCTTC	1 cut(s)	500
PkrI	GCNGC	5 cut(s)	12, 319, 457, 493, 512
Ple19I	CGATCG	1 cut(s)	28
PleI	GAGTC	1 cut(s)	166
PpsI	GAGTC	1 cut(s)	166
Psp124BI	GAGCTC	1 cut(s)	124
Psp6I	CCWGG	2 cut(s)	243, 352
PspGI	CCWGG	2 cut(s)	243, 352
PspN4I	GGNNCC	4 cut(s)	32, 242, 351, 399
PspPI	GGNCC	2 cut(s)	397, 464
PsuI	RGATCY	1 cut(s)	30
PvuI	CGATCG	1 cut(s)	28
RsaI	GTAC	3 cut(s)	326, 484, 594
RsaNI	GTAC	3 cut(s)	325, 483, 593
RseI	CAYNNNNRTG	1 cut(s)	426
SacI	GAGCTC	1 cut(s)	124
SapI	GCTCTTC	1 cut(s)	500
SaqAI	TTAA	2 cut(s)	213, 519
SatI	GCNGC	5 cut(s)	11, 318, 456, 492, 511
Sau3AI	GATC	5 cut(s)	25, 30, 171, 361, 514
Sau96I	GGNCC	2 cut(s)	397, 464
ScaI	AGTACT	1 cut(s)	326
SchI	GAGTC	1 cut(s)	167
ScrFI	CCNGG	3 cut(s)	245, 354, 401
SduI	GDGCHC	2 cut(s)	48, 124
SetI	ASST	9 cut(s)	70, 113, 124, 195, 204, 220, 340, 447, 598
SfaNI	GCATC	4 cut(s)	82, 169, 220, 274
SmiMI	CAYNNNNRTG	1 cut(s)	426
SmlI	CTYRAG	1 cut(s)	518
SmoI	CTYRAG	1 cut(s)	518
Sse9I	AATT	5 cut(s)	140, 165, 183, 404, 558
SsiI	CCGC	4 cut(s)	60, 287, 317, 602
SspI	AATATT	1 cut(s)	305
SstI	GAGCTC	1 cut(s)	124
StyD4I	CCNGG	3 cut(s)	243, 352, 399
TaqI	TCGA	2 cut(s)	24, 42
TasI	AATT	5 cut(s)	140, 165, 183, 404, 558
TatI	WGTACW	1 cut(s)	324
TauI	GCSGC	1 cut(s)	320
Tru1I	TTAA	2 cut(s)	213, 519
Tru9I	TTAA	2 cut(s)	213, 519
TscAI	CASTG	1 cut(s)	319
TseFI	GTSAC	1 cut(s)	445
TseI	GCWGC	4 cut(s)	10, 455, 491, 510
Tsp45I	GTSAC	1 cut(s)	445
TspRI	CASTG	1 cut(s)	319
Vha464I	CTTAAG	1 cut(s)	518
XceI	RCATGY	1 cut(s)	413
ZrmI	AGTACT	1 cut(s)	326

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.