Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2C

Orthogroup ID

OG0012823

Physical Location & Seq

Genomic Coordinates Forward (+)

81004957 .. 81007823

Gene Structure 2867 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2CG639300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 447 bp

ATGATCCAAGATGCAATTTCGAAGCTGGAGGAGGTGTTGGTGCTTAAACCTAAGAAACATGATGCTCTTTGGTGCCTGGGAAATGCACATACTTCTCATGCGTTTTTGACACCGGATGCGGAAGAGGCAAAGGAATATTTTGACACTGCGGCTGAGTACTTCAAGAAAGCTGTTGCTGAGGAACCAGGAAATGATCTCTATCGGAAATCTTTGGAAGTGTCTGCTAAGGCCCCGGAATTGCATGTGGAAATCCATAGGCATGGTTTTGGTCAGCAGGTGACGGGGGCTGCTGATGGGCCTTCTACTTCCTCTGGTACAATGGCTGCAAAGAAAAAGAAGAGCAGCGATCTTAAGTATGACATATTTGGTTGGATAATCCTTGCTGTCGGAATTGGCGCTTGGGTAGGATATGGGAAATCTAATGTACCTCCCCCGCCTCAGCAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005740 GO:0005741 GO:0005742 GO:0005743 GO:0005744 GO:0006605 GO:0006626 GO:0006810 GO:0006839 GO:0006886 GO:0006996 GO:0007005 GO:0008104 GO:0008150 GO:0008320 GO:0008565 GO:0009987 GO:0015031 GO:0015399 GO:0015405 GO:0015450 GO:0015833 GO:0016020 GO:0016043 GO:0019866 GO:0019867 GO:0022804 GO:0022857 GO:0022884 GO:0031090 GO:0031966 GO:0031967 GO:0031968 GO:0031975 GO:0032991 GO:0033036 GO:0033365 GO:0034613 GO:0042886 GO:0042887 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044429 GO:0044444 GO:0044446 GO:0044455 GO:0044464 GO:0045184 GO:0046907 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0055085 GO:0070585 GO:0070727 GO:0071702 GO:0071705 GO:0071806 GO:0071840 GO:0072594 GO:0072655 GO:0098588 GO:0098796 GO:0098798 GO:0098799 GO:0098800 GO:0098805 GO:1904680

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

TOM20_plant

Protein Analysis

148

Amino Acids

16.12

Weight (kDa)

6.29

Isoelectric Point (pI)

29.56

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
TOM20_plant	PF06552	1 - 138	7.5e-63	Plant specific mitochondrial import receptor subunit TOM20

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0012823)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G27080 AT5G40930 AT5G40930
fragaria_vesca	FvH4_6g17110 FvH4_6g53520
malus_domestica	MD09G1010900.v1.1
prunus_persica	Prupe.3G306200_v2.0.a1
pyrus_communis	pycom111g00910
rosa_chinensis	RchiOBHm_Chr2g0175551
rosa_laevigata	RLG00000022338
rosa_multiflora	Rmu_sc0008219.1_g000004 Rmu_sc0013970.1_g000005
rosa_rugosa	Rorug02G0586500
rosa_samantha	Rh2AG665300 Rh2BG676100 Rh2CG639300 Rh2DG690100
rosa_wichuraiana	Rw2G054540

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	265
Acc36I	ACCTGC	1 cut(s)	265
AccB1I	GGYRCC	1 cut(s)	72
AciI	CCGC	3 cut(s)	119, 149, 434
AfaI	GTAC	3 cut(s)	158, 316, 426
AflII	CTTAAG	1 cut(s)	350
AgsI	TTSAA	1 cut(s)	163
AjnI	CCWGG	2 cut(s)	75, 184
AjuI	GAANNNNNNNTTGG	2 cut(s)	382, 414
AluBI	AGCT	2 cut(s)	25, 170
AluI	AGCT	2 cut(s)	25, 170
AoxI	GGCC	2 cut(s)	228, 296
ApeKI	GCWGC	3 cut(s)	287, 323, 342
AspLEI	GCGC	1 cut(s)	398
AspS9I	GGNCC	2 cut(s)	229, 296
AsuC2I	CCSGG	1 cut(s)	233
AsuHPI	GGTGA	1 cut(s)	289
AsuII	TTCGAA	1 cut(s)	20
BanI	GGYRCC	1 cut(s)	72
BbvCI	CCTCAGC	2 cut(s)	177, 438
BbvI	GCAGC	3 cut(s)	274, 310, 354
BccI	CCATC	1 cut(s)	287
BciT130I	CCWGG	2 cut(s)	77, 186
BcnI	CCSGG	1 cut(s)	233
BfoI	RGCGCY	1 cut(s)	399
BfrI	CTTAAG	1 cut(s)	350
BfuAI	ACCTGC	1 cut(s)	265
BisI	GCNGC	4 cut(s)	150, 288, 324, 343
BlsI	GCNGC	4 cut(s)	151, 289, 325, 344
BmcAI	AGTACT	1 cut(s)	158
Bme1390I	CCNGG	3 cut(s)	77, 186, 233
BmgT120I	GGNCC	2 cut(s)	229, 296
BmiI	GGNNCC	3 cut(s)	74, 183, 231
BmrFI	CCNGG	3 cut(s)	77, 186, 233
BmsI	GCATC	2 cut(s)	52, 106
BpmI	CTGGAG	1 cut(s)	47
Bpu10I	CCTNAGC	3 cut(s)	177, 225, 438
Bpu14I	TTCGAA	1 cut(s)	20
BpuMI	CCSGG	1 cut(s)	233
BsaBI	GATNNNNATC	1 cut(s)	198
BsaJI	CCNNGG	2 cut(s)	76, 231
BsaWI	WCCGGW	1 cut(s)	112
BsaXI	ACNNNNNCTCC	2 cut(s)	20, 50
Bse8I	GATNNNNATC	1 cut(s)	198
BseBI	CCWGG	2 cut(s)	77, 186
BseDI	CCNNGG	2 cut(s)	76, 231
BseGI	GGATG	1 cut(s)	121
BseJI	GATNNNNATC	1 cut(s)	198
BseMII	CTCAG	2 cut(s)	144, 168
BseRI	GAGGAG	1 cut(s)	44
BseXI	GCAGC	3 cut(s)	274, 310, 354
BshFI	GGCC	2 cut(s)	230, 298
BshNI	GGYRCC	1 cut(s)	72
BsiSI	CCGG	2 cut(s)	113, 233
BsnI	GGCC	2 cut(s)	230, 298
Bsp119I	TTCGAA	1 cut(s)	20
Bsp143I	GATC	3 cut(s)	3, 193, 346
BspACI	CCGC	3 cut(s)	119, 149, 434
BspANI	GGCC	2 cut(s)	230, 298
BspCNI	CTCAG	2 cut(s)	145, 169
BspLI	GGNNCC	3 cut(s)	74, 183, 231
BspMI	ACCTGC	1 cut(s)	265
BspQI	GCTCTTC	1 cut(s)	332
BspT104I	TTCGAA	1 cut(s)	20
BspT107I	GGYRCC	1 cut(s)	72
BspTI	CTTAAG	1 cut(s)	350
BssECI	CCNNGG	2 cut(s)	76, 231
BssMI	GATC	3 cut(s)	3, 193, 346
Bst2UI	CCWGG	2 cut(s)	77, 186
Bst6I	CTCTTC	2 cut(s)	117, 332
BstAFI	CTTAAG	1 cut(s)	350
BstBI	TTCGAA	1 cut(s)	20
BstDEI	CTNAG	5 cut(s)	51, 153, 177, 225, 438
BstF5I	GGATG	1 cut(s)	121
BstH2I	RGCGCY	1 cut(s)	399
BstHHI	GCGC	1 cut(s)	398
BstKTI	GATC	3 cut(s)	6, 196, 349
BstMBI	GATC	3 cut(s)	3, 193, 346
BstMWI	GCNNNNNNNGC	1 cut(s)	125
BstNI	CCWGG	2 cut(s)	77, 186
BstNSI	RCATGY	1 cut(s)	245
BstSCI	CCNGG	3 cut(s)	75, 184, 231
BstV1I	GCAGC	3 cut(s)	274, 310, 354
BstXI	CCANNNNNNTGG	1 cut(s)	260
BsuRI	GGCC	2 cut(s)	230, 298
BtsCI	GGATG	1 cut(s)	121
BtsI	GCAGTG	1 cut(s)	144
BtsIMutI	CAGTG	1 cut(s)	144
BveI	ACCTGC	1 cut(s)	265
CfoI	GCGC	1 cut(s)	398
Cfr13I	GGNCC	2 cut(s)	229, 296
Csp6I	GTAC	3 cut(s)	157, 315, 425
CviAII	CATG	4 cut(s)	59, 98, 242, 260
CviJI	RGCY	7 cut(s)	25, 152, 170, 230, 287, 298, 323
CviKI_1	RGCY	7 cut(s)	25, 152, 170, 230, 287, 298, 323
CviQI	GTAC	3 cut(s)	157, 315, 425
DdeI	CTNAG	5 cut(s)	51, 153, 177, 225, 438
DpnI	GATC	3 cut(s)	5, 195, 348
DpnII	GATC	3 cut(s)	3, 193, 346
Eam1104I	CTCTTC	2 cut(s)	117, 332
EarI	CTCTTC	2 cut(s)	117, 332
EcoO109I	RGGNCCY	1 cut(s)	229
EcoRII	CCWGG	2 cut(s)	75, 184
FaeI	CATG	4 cut(s)	62, 101, 245, 263
FaiI	YATR	9 cut(s)	60, 90, 99, 243, 255, 261, 357, 362, 411
FatI	CATG	4 cut(s)	58, 97, 241, 259
FauI	CCCGC	1 cut(s)	441
Fnu4HI	GCNGC	4 cut(s)	150, 288, 324, 343
FokI	GGATG	1 cut(s)	128
Fsp4HI	GCNGC	4 cut(s)	150, 288, 324, 343
GlaI	GCGC	1 cut(s)	397
GluI	GCNGC	4 cut(s)	150, 288, 324, 343
GsuI	CTGGAG	1 cut(s)	47
HaeII	RGCGCY	1 cut(s)	399
HaeIII	GGCC	2 cut(s)	230, 298
HapII	CCGG	2 cut(s)	113, 233
HhaI	GCGC	1 cut(s)	398
Hin1II	CATG	4 cut(s)	62, 101, 245, 263
Hin6I	GCGC	1 cut(s)	396
HinP1I	GCGC	1 cut(s)	396
HpaII	CCGG	2 cut(s)	113, 233
HphI	GGTGA	1 cut(s)	289
Hpy188I	TCNGA	2 cut(s)	204, 389
Hpy188III	TCNNGA	1 cut(s)	163
HpyAV	CCTTC	1 cut(s)	309
HpyCH4V	TGCA	4 cut(s)	14, 86, 241, 326
HpyF10VI	GCNNNNNNNGC	1 cut(s)	125
HpyF3I	CTNAG	5 cut(s)	51, 153, 177, 225, 438
Hsp92II	CATG	4 cut(s)	62, 101, 245, 263
HspAI	GCGC	1 cut(s)	396
Kzo9I	GATC	3 cut(s)	3, 193, 346
LguI	GCTCTTC	1 cut(s)	332
LpnPI	CCDG	9 cut(s)	11, 62, 89, 126, 171, 198, 246, 260, 297
Lsp1109I	GCAGC	3 cut(s)	274, 310, 354
LweI	GCATC	2 cut(s)	52, 106
MaeIII	GTNAC	1 cut(s)	277
MalI	GATC	3 cut(s)	5, 195, 348
MboI	GATC	3 cut(s)	3, 193, 346
MboII	GAAGA	2 cut(s)	134, 349
MluCI	AATT	3 cut(s)	15, 236, 390
MmeI	TCCRAC	2 cut(s)	350, 367
MnlI	CCTC	7 cut(s)	22, 25, 118, 172, 319, 438, 447
MseI	TTAA	2 cut(s)	45, 351
MslI	CAYNNNNRTG	1 cut(s)	258
MspCI	CTTAAG	1 cut(s)	350
MspI	CCGG	2 cut(s)	113, 233
MspR9I	CCNGG	3 cut(s)	77, 186, 233
MvaI	CCWGG	2 cut(s)	77, 186
MwoI	GCNNNNNNNGC	1 cut(s)	125
NciI	CCSGG	1 cut(s)	233
NdeII	GATC	3 cut(s)	3, 193, 346
NlaIII	CATG	4 cut(s)	62, 101, 245, 263
NlaIV	GGNNCC	3 cut(s)	74, 183, 231
NmuCI	GTSAC	1 cut(s)	277
NspI	RCATGY	1 cut(s)	245
NspV	TTCGAA	1 cut(s)	20
PaqCI	CACCTGC	1 cut(s)	265
PciSI	GCTCTTC	1 cut(s)	332
PkrI	GCNGC	4 cut(s)	151, 289, 325, 344
Psp6I	CCWGG	2 cut(s)	75, 184
PspGI	CCWGG	2 cut(s)	75, 184
PspN4I	GGNNCC	3 cut(s)	74, 183, 231
PspPI	GGNCC	2 cut(s)	229, 296
RsaI	GTAC	3 cut(s)	158, 316, 426
RsaNI	GTAC	3 cut(s)	157, 315, 425
RseI	CAYNNNNRTG	1 cut(s)	258
SapI	GCTCTTC	1 cut(s)	332
SaqAI	TTAA	2 cut(s)	45, 351
SatI	GCNGC	4 cut(s)	150, 288, 324, 343
Sau3AI	GATC	3 cut(s)	3, 193, 346
Sau96I	GGNCC	2 cut(s)	229, 296
ScaI	AGTACT	1 cut(s)	158
ScrFI	CCNGG	3 cut(s)	77, 186, 233
SetI	ASST	6 cut(s)	27, 36, 52, 172, 279, 430
SfaNI	GCATC	2 cut(s)	52, 106
SfuI	TTCGAA	1 cut(s)	20
SmiMI	CAYNNNNRTG	1 cut(s)	258
SmlI	CTYRAG	1 cut(s)	350
SmoI	CTYRAG	1 cut(s)	350
Sse9I	AATT	3 cut(s)	15, 236, 390
SsiI	CCGC	3 cut(s)	119, 149, 434
SspI	AATATT	1 cut(s)	137
StyD4I	CCNGG	3 cut(s)	75, 184, 231
TaqI	TCGA	1 cut(s)	20
TasI	AATT	3 cut(s)	15, 236, 390
TatI	WGTACW	1 cut(s)	156
TauI	GCSGC	1 cut(s)	152
Tru1I	TTAA	2 cut(s)	45, 351
Tru9I	TTAA	2 cut(s)	45, 351
TscAI	CASTG	1 cut(s)	151
TseFI	GTSAC	1 cut(s)	277
TseI	GCWGC	3 cut(s)	287, 323, 342
Tsp45I	GTSAC	1 cut(s)	277
TspRI	CASTG	1 cut(s)	151
Vha464I	CTTAAG	1 cut(s)	350
XceI	RCATGY	1 cut(s)	245
ZrmI	AGTACT	1 cut(s)	158

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.