AT3G27960

Tetratricopeptide repeat

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
3
OG0010792
Physical Location & Seq
Reverse (-)
10380230 .. 10383249
3020 bp
Loading structure...
UTR
Exon/CDS
Intron
AT3G27960.1

Sequence Viewer

Length: 1992 bp
ATGGACGTAGGAGAGAGCAATGAGAGGGTAAAAGACGATTCTGCCCTTCAAGCTTCACCGAGGAGTCCTCTGAGTTCTATAGATCTTGCAATTGATGGAGCTATGAATGCTTCTATTGAGCAGTTGTATCATAACGTTTGTGAAATGGAGAGTTCTGATGATCAGTCTCCGTCCAGGGCGAGTTTTATTTCGTATGGAGCTGAATCTAGGATTGATTTGGAGTTGAGGCATTTGGTTGGAGATGTAGGAGAAGAAGGAGAGAGCAAGAAAGAGATTATCTTGGAGAAGAAGGAAGAAAGTAATGGAGAAGGTAGCTTGAGTCAGAAGAAACCTCTTTCGAATGGTAAGAAGGTTGCGAAAACGAGTCCTAATAATCCGAAGATGCCGGGTTCGAGGATCTCTTCGAGGAAATCACCGGATTTGGGGAAGGTTTCTGTTGATGAGGAGAGTCCTGAGCTTGGTGTGGTGTTGTTGAAGCAAGCCAGAGAGTTGGTTTCTTCAGGTGAGAATTTAAACAAGGCTCTTGATTTAGCGTTGAGAGCGGTGAAAGTGTTTGAGAAATGTGGGGAAGGAGAGAAACAACTTGGGTTGAATTTGGTGATGTCTTTGCATATCTTGGCAGCGATATATGCAGGGTTAGGGAGATACAATGACGCTGTGCCTGTTCTTGAACGTTCTATCGAGATACCGATGATTGAAGATGGTGAGGATCACGCGTTGGCGAAATTTGCAGGGTGTATGCAGCTTGGTGACATGTATGGTTTGATGGGTCAAGTTGAAAATTCGATTATGCTATACACCGCGGGTTTGGAGATTCAAAGACAAGTTCTTGGAGAATCGGATGCACGAGTTGGCGAAACTTGTAGGTACTTAGCGGAAGCTCATGTTCAAGCAATGCAGTTTGAAGAAGCCTCAAGGCTTTGTCAAATGGCATTGGACATTCACAAAGAAAACGGTGCTGCCGCTACAGCTTCTATTGAAGAAGCTGCGGATAGAAAACTGATGGGACTTATCTGCGATGCGAAAGGTGATTATGAAGTTGCGCTTGAGCATTATGTTTTAGCGAGCATGGCAATGTCATCTCAGAACCATAGAGAAGATGTTGCTGCTGTAGATTGCAGTATTGGTGATGCTTACATGTCGCTAGCTAGGTTTGATGAAGCGATATTCGCATACCAGAAGGCTTTAGCTGTGTTTAAGCAAGGAAAAGGTGAGACTCATTCCTCTGTTGCTTTGGTTTACGTTAGGCTTGCTGACTTGTACAACAAGATTGGGAAAACACGCGATTCCAAATCGTACTGCGAAAACGCTCTCAAGATTTACCTAAAACCGACTCCAGGAACTCCTATGGAAGAGGTTGCGACTGGTTTTATAGAGATTTCTGCGATATATCAGTCAATGAATGAACTTGATCAAGCTCTTAAGTTGTTGAGACGGGCGTTGAAGATATATGCAAACGCTCCAGGTCAACAGAACACGATTGCAGGTATTGAAGCTCAAATGGGTGTGGTTACTTATATGATGGGAAATTACTCCGAGTCCTACGACATATTCAAGAGCGCGATATCAAAGTTCCGCAATAGCGGAGAGAAAAAAACCGCTCTTTTCGGGATTGCTTTGAATCAGATGGGACTAGCTTGCGTTCAGCGTTACGCGATCAATGAAGCTGCAGATTTGTTTGAAGAAGCGAAAACTATTCTTGAGAAAGAGTGTGGACCGTACCATCCCGATACATTAGCGGTTTACAGTAACCTTGCTGGAACGTACGACGCAATGGGAAGGTTAGATGATGCTATAGAGATATTGGAGTATGTTGTTGGGACAAGAGAAGAGAAGCTCGGGACGGCAAATCCCGAGGTTGAGGACGAGAAGCAGAGGCTTGCTGCGTTGTTGAAAGAAGCTGGAAGAGGAAGGAGTAAAAGAAACAGAGCACTTCTTACCCTTTTGGACAACAACCCTGAAATTGCAAATGGACAGAGACCGGTTTATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000003 GO:0000902 GO:0000904 GO:0001655 GO:0001822 GO:0001889 GO:0001894 GO:0001895 GO:0001947 GO:0002009 GO:0003006 GO:0003007 GO:0003143 GO:0003205 GO:0003230 GO:0003279 GO:0003283 GO:0003341 GO:0003351 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005886 GO:0005929 GO:0006928 GO:0006996 GO:0007017 GO:0007018 GO:0007275 GO:0007368 GO:0007369 GO:0007389 GO:0007507 GO:0008150 GO:0009653 GO:0009790 GO:0009799 GO:0009826 GO:0009855 GO:0009856 GO:0009860 GO:0009887 GO:0009888 GO:0009932 GO:0009966 GO:0009968 GO:0009987 GO:0010646 GO:0010648 GO:0016020 GO:0016043 GO:0016049 GO:0022414 GO:0022603 GO:0022607 GO:0023051 GO:0023057 GO:0030030 GO:0030031 GO:0030111 GO:0030154 GO:0030178 GO:0030323 GO:0030324 GO:0031016 GO:0031347 GO:0032501 GO:0032502 GO:0032989 GO:0035050 GO:0035239 GO:0035295 GO:0035469 GO:0040007 GO:0042592 GO:0042995 GO:0043226 GO:0044085 GO:0044424 GO:0044444 GO:0044464 GO:0044706 GO:0044782 GO:0045494 GO:0045595 GO:0045596 GO:0045995 GO:0048468 GO:0048496 GO:0048513 GO:0048519 GO:0048523 GO:0048562 GO:0048565 GO:0048568 GO:0048583 GO:0048585 GO:0048588 GO:0048589 GO:0048598 GO:0048729 GO:0048731 GO:0048732 GO:0048856 GO:0048868 GO:0048869 GO:0048871 GO:0050789 GO:0050793 GO:0050794 GO:0051093 GO:0051239 GO:0051704 GO:0051960 GO:0055123 GO:0060026 GO:0060027 GO:0060249 GO:0060271 GO:0060287 GO:0060429 GO:0060541 GO:0060560 GO:0060562 GO:0060828 GO:0060993 GO:0061008 GO:0061371 GO:0065007 GO:0065008 GO:0070925 GO:0071840 GO:0071907 GO:0071908 GO:0071909 GO:0071910 GO:0071944 GO:0072001 GO:0072189 GO:0072359 GO:0080134 GO:0090090 GO:0090175 GO:0090178 GO:0120025 GO:0120031 GO:0120036 GO:1905276 GO:1905330 GO:2000026 GO:2000027 GO:2000050 GO:2000095 GO:2000167
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
TPR_10 TPR_12 TPR_7 TPR_8

Protein Analysis

663

Amino Acids

72.51

Weight (kDa)

5.02

Isoelectric Point (pI)

45.18

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
TPR_12 PF13424 248 - 316 9e-07 Tetratricopeptide repeat
TPR_MalT PF17874 290 - 483 7e-09 MalT-like TPR region
TPR_NPHP3 PF24885 359 - 498 4.9e-09 Nephrocystin-3 TPR domain
TPR_12 PF13424 367 - 442 2e-08 Tetratricopeptide repeat
TPR_12 PF13424 410 - 484 9.3e-08 Tetratricopeptide repeat
TPR_12 PF13424 539 - 603 2e-10 Tetratricopeptide repeat
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0010792)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G27960 AT3G27960 AT3G27960
fragaria_vesca FvH4_6g50730
malus_domestica MD09G1033100.v1.1 MD17G1034400.v1.1
prunus_persica Prupe.3G285200_v2.0.a1 Prupe.3G285200_v2.0.a1
pyrus_communis pycom111g02640 pycom17g03180
rosa_chinensis RchiOBHm_Chr2g0171671
rosa_laevigata RLG00000022027
rosa_multiflora Rmu_ssc0000252.1_g000009
rosa_roxburghii Rroxscaffold_2G00080540
rosa_rugosa Rorug02G0555200
rosa_samantha Rh2AG630200 Rh2BG640700 Rh2BG643200 Rh2CG609000
rosa_wichuraiana Rw2G052150

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 1475
AccBSI CCGCTC 2 cut(s) 542, 1601
AccII CGCG 5 cut(s) 716, 803, 1284, 1562, 1655
AclI AACGTT 2 cut(s) 135, 673
AclWI GGATC 2 cut(s) 404, 717
AcsI RAATTY 4 cut(s) 508, 592, 725, 781
AcuI CTGAAG 1 cut(s) 483
AfaI GTAC 5 cut(s) 869, 1262, 1298, 1721, 1766
AfiI CCNNNNNNNGG 3 cut(s) 422, 458, 1337
AflII CTTAAG 1 cut(s) 1421
AflIII ACRYGT 3 cut(s) 714, 753, 1137
AgeI ACCGGT 1 cut(s) 1981
AjnI CCWGG 3 cut(s) 173, 1336, 1462
Alw21I GWGCWC 1 cut(s) 1933
Alw26I GTCTC 4 cut(s) 171, 1208, 1426, 1972
AlwI GGATC 2 cut(s) 404, 717
Ama87I CYCGRG 2 cut(s) 1838, 1853
ApeKI GCWGC 7 cut(s) 620, 742, 959, 986, 1106, 1667, 1883
ApoI RAATTY 4 cut(s) 508, 592, 725, 781
AsiGI ACCGGT 1 cut(s) 1981
AspLEI GCGC 2 cut(s) 1045, 1562
AspS9I GGNCC 1 cut(s) 1715
AsuC2I CCSGG 1 cut(s) 387
AsuII TTCGAA 1 cut(s) 338
AsuNHI GCTAGC 1 cut(s) 1144
AvaI CYCGRG 2 cut(s) 1838, 1853
AvaII GGWCC 1 cut(s) 1715
BauI CACGAG 1 cut(s) 846
Bbv12I GWGCWC 1 cut(s) 1933
BbvI GCAGC 7 cut(s) 632, 754, 946, 973, 1093, 1654, 1870
BccI CCATC 7 cut(s) 89, 695, 760, 997, 1516, 1621, 1731
BceAI ACGGC 1 cut(s) 1860
BciT130I CCWGG 3 cut(s) 175, 1338, 1464
BclI TGATCA 2 cut(s) 160, 1411
BcnI CCSGG 1 cut(s) 387
BcoDI GTCTC 4 cut(s) 171, 1208, 1426, 1972
BfaI CTAG 4 cut(s) 207, 1145, 1149, 1634
BfmI CTRYAG 5 cut(s) 78, 966, 1110, 1668, 1794
BfrI CTTAAG 1 cut(s) 1421
BfuAI ACCTGC 1 cut(s) 1475
BglII AGATCT 1 cut(s) 82
BisI GCNGC 8 cut(s) 621, 743, 960, 963, 987, 1107, 1668, 1884
BlsI GCNGC 8 cut(s) 622, 744, 961, 964, 988, 1108, 1669, 1885
Bme1390I CCNGG 4 cut(s) 175, 387, 1338, 1464
Bme18I GGWCC 1 cut(s) 1715
BmeT110I CYCGRG 2 cut(s) 1838, 1853
BmgT120I GGNCC 1 cut(s) 1715
BmrFI CCNGG 4 cut(s) 175, 387, 1338, 1464
BmsI GCATC 5 cut(s) 372, 832, 1009, 1120, 1780
BmtI GCTAGC 1 cut(s) 1148
BplI GAGNNNNNCTC 2 cut(s) 52, 84
BpmI CTGGAG 2 cut(s) 1320, 1446
Bpu10I CCTNAGC 1 cut(s) 453
Bpu14I TTCGAA 1 cut(s) 338
BpuEI CTTGAG 5 cut(s) 337, 898, 1067, 1298, 1721
BpuMI CCSGG 1 cut(s) 387
BsaI GGTCTC 1 cut(s) 1972
BsaJI CCNNGG 4 cut(s) 59, 174, 801, 1854
BsaWI WCCGGW 2 cut(s) 415, 1981
Bsc4I CCNNNNNNNGG 3 cut(s) 422, 458, 1337
Bse118I RCCGGY 1 cut(s) 1981
Bse1I ACTGG 1 cut(s) 1369
Bse3DI GCAATG 4 cut(s) 25, 900, 1080, 1779
BseBI CCWGG 3 cut(s) 175, 1338, 1464
BseDI CCNNGG 4 cut(s) 59, 174, 801, 1854
BseGI GGATG 2 cut(s) 847, 1723
BseLI CCNNNNNNNGG 3 cut(s) 422, 458, 1337
BseMI GCAATG 4 cut(s) 25, 900, 1080, 1779
BseMII CTCAG 3 cut(s) 62, 444, 1097
BseNI ACTGG 1 cut(s) 1369
BseRI GAGGAG 2 cut(s) 76, 458
BseXI GCAGC 7 cut(s) 632, 754, 946, 973, 1093, 1654, 1870
Bsh1236I CGCG 5 cut(s) 716, 803, 1284, 1562, 1655
BshTI ACCGGT 1 cut(s) 1981
BsiHKAI GWGCWC 1 cut(s) 1933
BsiHKCI CYCGRG 2 cut(s) 1838, 1853
BsiSI CCGG 3 cut(s) 386, 416, 1982
BsiWI CGTACG 1 cut(s) 1764
BslFI GGGAC 4 cut(s) 1020, 1644, 1834, 1855
BslI CCNNNNNNNGG 3 cut(s) 422, 458, 1337
BsmAI GTCTC 4 cut(s) 171, 1208, 1426, 1972
BsmBI CGTCTC 1 cut(s) 1426
BsmFI GGGAC 4 cut(s) 1020, 1644, 1834, 1855
BsmI GAATGC 1 cut(s) 112
Bso31I GGTCTC 1 cut(s) 1972
BsoBI CYCGRG 2 cut(s) 1838, 1853
Bsp119I TTCGAA 1 cut(s) 338
Bsp1286I GDGCHC 1 cut(s) 1933
Bsp1407I TGTACA 1 cut(s) 1260
Bsp143I GATC 6 cut(s) 82, 160, 396, 709, 1411, 1656
BspCNI CTCAG 3 cut(s) 63, 445, 1096
BspFNI CGCG 5 cut(s) 716, 803, 1284, 1562, 1655
BspMAI CTGCAG 1 cut(s) 1672
BspMI ACCTGC 1 cut(s) 1475
BspOI GCTAGC 1 cut(s) 1148
BspPI GGATC 2 cut(s) 404, 717
BspT104I TTCGAA 1 cut(s) 338
BspTI CTTAAG 1 cut(s) 1421
BspTNI GGTCTC 1 cut(s) 1972
BsrBI CCGCTC 2 cut(s) 542, 1601
BsrDI GCAATG 4 cut(s) 25, 900, 1080, 1779
BsrFI RCCGGY 1 cut(s) 1981
BsrGI TGTACA 1 cut(s) 1260
BsrI ACTGG 1 cut(s) 1369
BssAI RCCGGY 1 cut(s) 1981
BssECI CCNNGG 4 cut(s) 59, 174, 801, 1854
BssMI GATC 6 cut(s) 82, 160, 396, 709, 1411, 1656
BssSI CACGAG 1 cut(s) 846
Bst2BI CACGAG 1 cut(s) 846
Bst2UI CCWGG 3 cut(s) 175, 1338, 1464
Bst4CI ACNGT 3 cut(s) 956, 1719, 1748
Bst6I CTCTTC 4 cut(s) 406, 1347, 1824, 1900
BstAFI CTTAAG 1 cut(s) 1421
BstAUI TGTACA 1 cut(s) 1260
BstBI TTCGAA 1 cut(s) 338
BstC8I GCNNGC 6 cut(s) 480, 1066, 1146, 1251, 1639, 1881
BstDEI CTNAG 4 cut(s) 71, 453, 871, 1083
BstDSI CCRYGG 1 cut(s) 801
BstF5I GGATG 2 cut(s) 847, 1723
BstFNI CGCG 5 cut(s) 716, 803, 1284, 1562, 1655
BstHHI GCGC 2 cut(s) 1045, 1562
BstKTI GATC 6 cut(s) 85, 163, 399, 712, 1414, 1659
BstMAI GTCTC 4 cut(s) 171, 1208, 1426, 1972
BstMBI GATC 6 cut(s) 82, 160, 396, 709, 1411, 1656
BstMWI GCNNNNNNNGC 8 cut(s) 50, 107, 539, 629, 728, 968, 1070, 1169
BstNI CCWGG 3 cut(s) 175, 1338, 1464
BstNSI RCATGY 2 cut(s) 757, 1141
BstSCI CCNGG 4 cut(s) 173, 385, 1336, 1462
BstSFI CTRYAG 5 cut(s) 78, 966, 1110, 1668, 1794
BstUI CGCG 5 cut(s) 716, 803, 1284, 1562, 1655
BstV1I GCAGC 7 cut(s) 632, 754, 946, 973, 1093, 1654, 1870
BstX2I RGATCY 2 cut(s) 82, 396
BstXI CCANNNNNNTGG 1 cut(s) 490
BstYI RGATCY 2 cut(s) 82, 396
BtgI CCRYGG 1 cut(s) 801
BtgZI GCGATG 1 cut(s) 1032
BtsCI GGATG 2 cut(s) 847, 1723
BveI ACCTGC 1 cut(s) 1475
Cac8I GCNNGC 6 cut(s) 480, 1066, 1146, 1251, 1639, 1881
CfoI GCGC 2 cut(s) 1045, 1562
Cfr10I RCCGGY 1 cut(s) 1981
Cfr13I GGNCC 1 cut(s) 1715
Cfr42I CCGCGG 1 cut(s) 804
CseI GACGC 2 cut(s) 662, 1778
Csp6I GTAC 5 cut(s) 868, 1261, 1297, 1720, 1765
CspAI ACCGGT 1 cut(s) 1981
CviAII CATG 4 cut(s) 754, 884, 1069, 1138
CviQI GTAC 5 cut(s) 868, 1261, 1297, 1720, 1765
DdeI CTNAG 4 cut(s) 71, 453, 871, 1083
DpnI GATC 6 cut(s) 84, 162, 398, 711, 1413, 1658
DpnII GATC 6 cut(s) 82, 160, 396, 709, 1411, 1656
DraI TTTAAA 1 cut(s) 513
Eam1104I CTCTTC 4 cut(s) 406, 1347, 1824, 1900
EarI CTCTTC 4 cut(s) 406, 1347, 1824, 1900
Eco31I GGTCTC 1 cut(s) 1972
Eco32I GATATC 1 cut(s) 1566
Eco47I GGWCC 1 cut(s) 1715
Eco57I CTGAAG 1 cut(s) 483
Eco88I CYCGRG 2 cut(s) 1838, 1853
EcoRII CCWGG 3 cut(s) 173, 1336, 1462
EcoRV GATATC 1 cut(s) 1566
Esp3I CGTCTC 1 cut(s) 1426
FaeI CATG 4 cut(s) 757, 887, 1072, 1141
FalI AAGNNNNNCTT 2 cut(s) 1029, 1061
FaqI GGGAC 4 cut(s) 1020, 1644, 1834, 1855
FatI CATG 4 cut(s) 753, 883, 1068, 1137
FauI CCCGC 1 cut(s) 796
FbaI TGATCA 2 cut(s) 160, 1411
Fnu4HI GCNGC 8 cut(s) 621, 743, 960, 963, 987, 1107, 1668, 1884
FokI GGATG 2 cut(s) 854, 1710
Fsp4HI GCNGC 8 cut(s) 621, 743, 960, 963, 987, 1107, 1668, 1884
FspBI CTAG 4 cut(s) 207, 1145, 1149, 1634
GlaI GCGC 2 cut(s) 1044, 1561
GluI GCNGC 8 cut(s) 621, 743, 960, 963, 987, 1107, 1668, 1884
GsuI CTGGAG 2 cut(s) 1320, 1446
HapII CCGG 3 cut(s) 386, 416, 1982
HgaI GACGC 2 cut(s) 662, 1778
HhaI GCGC 2 cut(s) 1045, 1562
Hin1II CATG 4 cut(s) 757, 887, 1072, 1141
Hin6I GCGC 2 cut(s) 1043, 1560
HinP1I GCGC 2 cut(s) 1043, 1560
HincII GTYRAC 1 cut(s) 1469
HindII GTYRAC 1 cut(s) 1469
HindIII AAGCTT 1 cut(s) 51
HpaII CCGG 3 cut(s) 386, 416, 1982
Hpy166II GTNNAC 4 cut(s) 1240, 1469, 1715, 1744
Hpy188I TCNGA 8 cut(s) 72, 157, 324, 378, 841, 1086, 1537, 1626
Hpy8I GTNNAC 4 cut(s) 1240, 1469, 1715, 1744
Hpy99I CGWCG 1 cut(s) 1772
HpyCH4III ACNGT 3 cut(s) 956, 1719, 1748
HpyCH4IV ACGT 5 cut(s) 6, 135, 673, 1242, 1763
HpyF10VI GCNNNNNNNGC 8 cut(s) 50, 107, 539, 629, 728, 968, 1070, 1169
HpyF3I CTNAG 4 cut(s) 71, 453, 871, 1083
HpySE526I ACGT 5 cut(s) 6, 135, 673, 1242, 1763
Hsp92II CATG 4 cut(s) 757, 887, 1072, 1141
HspAI GCGC 2 cut(s) 1043, 1560
Ksp22I TGATCA 2 cut(s) 160, 1411
KspI CCGCGG 1 cut(s) 804
Kzo9I GATC 6 cut(s) 82, 160, 396, 709, 1411, 1656
LmnI GCTCC 3 cut(s) 98, 197, 1465
Lsp1109I GCAGC 7 cut(s) 632, 754, 946, 973, 1093, 1654, 1870
LweI GCATC 5 cut(s) 372, 832, 1009, 1120, 1780
MaeI CTAG 4 cut(s) 207, 1145, 1149, 1634
MaeII ACGT 5 cut(s) 6, 135, 673, 1242, 1763
MaeIII GTNAC 4 cut(s) 749, 1510, 1649, 1748
MalI GATC 6 cut(s) 84, 162, 398, 711, 1413, 1658
MbiI CCGCTC 2 cut(s) 542, 1601
MboI GATC 6 cut(s) 82, 160, 396, 709, 1411, 1656
MfeI CAATTG 1 cut(s) 90
MflI RGATCY 2 cut(s) 82, 396
MhlI GDGCHC 1 cut(s) 1933
MluCI AATT 7 cut(s) 90, 508, 592, 725, 781, 1528, 1962
MluI ACGCGT 1 cut(s) 714
MlyI GAGTC 7 cut(s) 73, 328, 373, 457, 1210, 1327, 1547
MmeI TCCRAC 1 cut(s) 217
MseI TTAA 3 cut(s) 512, 1197, 1422
MslI CAYNNNNRTG 1 cut(s) 1073
MspA1I CMGCKG 1 cut(s) 803
MspCI CTTAAG 1 cut(s) 1421
MspI CCGG 3 cut(s) 386, 416, 1982
MspR9I CCNGG 4 cut(s) 175, 387, 1338, 1464
MunI CAATTG 1 cut(s) 90
Mva1269I GAATGC 1 cut(s) 112
MvaI CCWGG 3 cut(s) 175, 1338, 1464
MvnI CGCG 5 cut(s) 716, 803, 1284, 1562, 1655
MwoI GCNNNNNNNGC 8 cut(s) 50, 107, 539, 629, 728, 968, 1070, 1169
NciI CCSGG 1 cut(s) 387
NdeII GATC 6 cut(s) 82, 160, 396, 709, 1411, 1656
NheI GCTAGC 1 cut(s) 1144
NlaIII CATG 4 cut(s) 757, 887, 1072, 1141
NmuCI GTSAC 1 cut(s) 749
NspI RCATGY 2 cut(s) 757, 1141
NspV TTCGAA 1 cut(s) 338
PciI ACATGT 2 cut(s) 753, 1137
PctI GAATGC 1 cut(s) 112
PfeI GAWTC 6 cut(s) 38, 203, 814, 836, 1286, 1621
Pfl23II CGTACG 1 cut(s) 1764
PfoI TCCNGGA 1 cut(s) 1336
PinAI ACCGGT 1 cut(s) 1981
PkrI GCNGC 8 cut(s) 622, 744, 961, 964, 988, 1108, 1669, 1885
PleI GAGTC 7 cut(s) 72, 327, 372, 456, 1210, 1327, 1546
PpsI GAGTC 7 cut(s) 72, 327, 372, 456, 1210, 1327, 1546
PscI ACATGT 2 cut(s) 753, 1137
Psp1406I AACGTT 2 cut(s) 135, 673
Psp6I CCWGG 3 cut(s) 173, 1336, 1462
PspGI CCWGG 3 cut(s) 173, 1336, 1462
PspLI CGTACG 1 cut(s) 1764
PspPI GGNCC 1 cut(s) 1715
PstI CTGCAG 1 cut(s) 1672
PsuI RGATCY 2 cut(s) 82, 396
RsaI GTAC 5 cut(s) 869, 1262, 1298, 1721, 1766
RsaNI GTAC 5 cut(s) 868, 1261, 1297, 1720, 1765
RseI CAYNNNNRTG 1 cut(s) 1073
SacII CCGCGG 1 cut(s) 804
SaqAI TTAA 3 cut(s) 512, 1197, 1422
SatI GCNGC 8 cut(s) 621, 743, 960, 963, 987, 1107, 1668, 1884
Sau3AI GATC 6 cut(s) 82, 160, 396, 709, 1411, 1656
Sau96I GGNCC 1 cut(s) 1715
SchI GAGTC 7 cut(s) 73, 328, 373, 457, 1210, 1327, 1547
ScrFI CCNGG 4 cut(s) 175, 387, 1338, 1464
SduI GDGCHC 1 cut(s) 1933
SfaNI GCATC 5 cut(s) 372, 832, 1009, 1120, 1780
SfcI CTRYAG 5 cut(s) 78, 966, 1110, 1668, 1794
Sfr303I CCGCGG 1 cut(s) 804
SfuI TTCGAA 1 cut(s) 338
SgrBI CCGCGG 1 cut(s) 804
SinI GGWCC 1 cut(s) 1715
SmiMI CAYNNNNRTG 1 cut(s) 1073
SmlI CTYRAG 6 cut(s) 316, 913, 1046, 1313, 1421, 1700
SmoI CTYRAG 6 cut(s) 316, 913, 1046, 1313, 1421, 1700
Sse9I AATT 7 cut(s) 90, 508, 592, 725, 781, 1528, 1962
SspMI CTAG 4 cut(s) 207, 1145, 1149, 1634
StyD4I CCNGG 4 cut(s) 173, 385, 1336, 1462
TaaI ACNGT 3 cut(s) 956, 1719, 1748
TaiI ACGT 5 cut(s) 9, 138, 676, 1245, 1766
TaqI TCGA 5 cut(s) 338, 392, 404, 681, 785
TasI AATT 7 cut(s) 90, 508, 592, 725, 781, 1528, 1962
TatI WGTACW 1 cut(s) 1260
TauI GCSGC 1 cut(s) 965
TfiI GAWTC 6 cut(s) 38, 203, 814, 836, 1286, 1621
Tru1I TTAA 3 cut(s) 512, 1197, 1422
Tru9I TTAA 3 cut(s) 512, 1197, 1422
TseFI GTSAC 1 cut(s) 749
TseI GCWGC 7 cut(s) 620, 742, 959, 986, 1106, 1667, 1883
Tsp45I GTSAC 1 cut(s) 749
TspDTI ATGAA 6 cut(s) 119, 1050, 1173, 1415, 1419, 1677
TspGWI ACGGA 1 cut(s) 159
Vha464I CTTAAG 1 cut(s) 1421
VpaK11BI GGWCC 1 cut(s) 1715
XapI RAATTY 4 cut(s) 508, 592, 725, 781
XceI RCATGY 2 cut(s) 757, 1141
XspI CTAG 4 cut(s) 207, 1145, 1149, 1634
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.