RLG00000022027

Tetratricopeptide repeat

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr4
OG0010792
Physical Location & Seq
Forward (+)
80119841 .. 80122098
2258 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000022027

Sequence Viewer

Length: 2115 bp
ATGGATGAACTGAATGTGAATGGGGTAGTAGATGAGCAGAGTGGAGAGCATACACCTCACAAGGAAGGCTATAACCAGCAAGGCTCTCCGAGAAGTCCATTGAGTCCTCAAAGTCCTCATAGTGACTCCATTGGTATGCCTATGGATGGCCGGATTGACACCTCGATTGAGCAGCTGTATCACAATGTATGTGAAATGCAGAGCTCTGATCAATCTCCATCCAGGGCTAGTTTTGGATCGTTTGGAGCTGAGTCGAGGATTGATTCAGAGTTGAATCATCTTGTTGGGTATTATGTTCATCCAGATGTGGAGGTAAGGAAAGAGGTTGTTGTGGAAACCAGAGAGGATAGTACCTCAACTCCTGAAAAAGAAAATGTGTCTGTGGGAACAAAGGTGAAGATGCAATCTCCTAAGTTCAGTCCTAGGAGCAAATCTCCCAATCAGAGGCCTCCCCTTGACAAGAGGAGTCCAAGAAATGCATGTTCAGTGATGTCGAAGAACAAGCTGAGAAGTTTAGCTTTACGAGGGATGAAGCTTCAGAATGGAGTCGAGGATCCCTCTGTGGAGGGATTGGATAGCCCTGATCTTGGACCCTTCTTGCTTAAGCAAGCAAGGGATATGATTTCTGCTGGTGAAAGTCCCCGGAAGGCGCTTGAGTTGGCTCTTCGGGCAGTGAAATCATTTGAGAAATGTACAACCGAGAAACCCAGTTTAGAGTTGGTCATGTGTTTGCATGTTTTGGCATCAATCCATTGCAGCTTAGGCCAGTACAATGAGGCAATTCCAGTTCTTGAGCGCGGCATTGATATTCCAGCTATAGAGGATGGCCATGACCACGCACTAGCCAAGTTTGCAGGGTGCATGCAACTGGGTGACATTTATGCAATGACGGGTCAGATTGAGAATTCAATACTGTTCTACACAGCAGGTATGGAGATACAAAGGCAAGTCTTGGGAGAAACAGACCCTCGATTTGGTGAGACATGTAGATATGTAGCTGAGGCTCATGTCCAAGCATTGCAGTTTGATGAGGCTGAGAAGCTGTGTCTAATGGCCCTTGAAATCCACAGAGAGAATGGTTCTCCTGCTTCACTTGAGGAGGCGGCAGATAGAAGACTCATGGGACTCATCTGTGACTCAAAAGGAGATTATGAAGCTGCTCTTGAGCATTATGTTTTAGCAGGCATGTCCATGTCTGCCAATGGCCACGAAACAGATGCAGCTTCAATTGATTGCTGTATTGGAGATGCTTATCTGGCCTTGGCTCGGTATGATGAGGCAGTCTTTGCTTTCCAGAAAGCACTGACTGTGTTTAAGACCACTAAAGGAGAGACACATCCAGCAGTAGCTTCTGTTTATGTCCGGTTAGCTGATCTTTACAACAAGATAGGGAAGTTTAAGGAGTCCAAGTCATACTGTGAAAATGCACATAAAATCTACGGGAAGCCAAATCCTGGAATCCCTGCAGAAGAGATTGCTAGTGGTCTTATTGATGTTTCTGCTATCTATCAATCTATGAATGATTTGGAGCAGGCCCTCAAGTTACTTAAGAAGGCTTTGAAGATGTTTGGTGATTCCCCAGGTCAACAAAGTACAATTGCAGGAATTGAGGCTCAGATGGGGGTCATGTATTATATGATGGGAAAGTACTCAGACTCCTACAACACCTTCAAGAGTTCCACAACCAAGTTCAGGGCCAGTGGAGAGAAAAAATCAGCCTTGTTTGGGATTGCTCTGAACCAAATGGGTCTAGCCTGTGTGCAGTGCTATTCAATAAACGAGGCTGCAGACCTGTTTGAAGAAGCCAGGAATATCTTAGAGAAGGAATACGGGCCATATCACCCTGATACATTGGGCGTGTATAGTAATTTGGCTGGCACATACGATGCAATGGGCAGGTTGGATGATGCCATTGAAATTTTGGAATATGTTGTTGGGATGAGAGAAGAGAAGCTTGGAACGGCAAATCCTGATGTGGCCGATGAGAAGCGGAGGTTGGCTGTGTTGTTGAAAGAAGCAGGCAGGGTGAGGAACAGGAAACCAAGATCACTAGAGACACTTCTCGACACTGCCAACCCCCAAATTAGAAGAGGTGACATTATTGAGGTACTGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000003 GO:0000902 GO:0000904 GO:0001655 GO:0001822 GO:0001889 GO:0001894 GO:0001895 GO:0001947 GO:0002009 GO:0003006 GO:0003007 GO:0003143 GO:0003205 GO:0003230 GO:0003279 GO:0003283 GO:0003341 GO:0003351 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005886 GO:0005929 GO:0006928 GO:0006996 GO:0007017 GO:0007018 GO:0007275 GO:0007368 GO:0007369 GO:0007389 GO:0007507 GO:0008150 GO:0009653 GO:0009790 GO:0009799 GO:0009826 GO:0009855 GO:0009856 GO:0009860 GO:0009887 GO:0009888 GO:0009932 GO:0009966 GO:0009968 GO:0009987 GO:0010646 GO:0010648 GO:0016020 GO:0016043 GO:0016049 GO:0022414 GO:0022603 GO:0022607 GO:0023051 GO:0023057 GO:0030030 GO:0030031 GO:0030111 GO:0030154 GO:0030178 GO:0030323 GO:0030324 GO:0031016 GO:0031347 GO:0032501 GO:0032502 GO:0032989 GO:0035050 GO:0035239 GO:0035295 GO:0035469 GO:0040007 GO:0042592 GO:0042995 GO:0043226 GO:0044085 GO:0044424 GO:0044444 GO:0044464 GO:0044706 GO:0044782 GO:0045494 GO:0045595 GO:0045596 GO:0045995 GO:0048468 GO:0048496 GO:0048513 GO:0048519 GO:0048523 GO:0048562 GO:0048565 GO:0048568 GO:0048583 GO:0048585 GO:0048588 GO:0048589 GO:0048598 GO:0048729 GO:0048731 GO:0048732 GO:0048856 GO:0048868 GO:0048869 GO:0048871 GO:0050789 GO:0050793 GO:0050794 GO:0051093 GO:0051239 GO:0051704 GO:0051960 GO:0055123 GO:0060026 GO:0060027 GO:0060249 GO:0060271 GO:0060287 GO:0060429 GO:0060541 GO:0060560 GO:0060562 GO:0060828 GO:0060993 GO:0061008 GO:0061371 GO:0065007 GO:0065008 GO:0070925 GO:0071840 GO:0071907 GO:0071908 GO:0071909 GO:0071910 GO:0071944 GO:0072001 GO:0072189 GO:0072359 GO:0080134 GO:0090090 GO:0090175 GO:0090178 GO:0120025 GO:0120031 GO:0120036 GO:1905276 GO:1905330 GO:2000026 GO:2000027 GO:2000050 GO:2000095 GO:2000167
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
TPR_10 TPR_12 TPR_7 TPR_8

Protein Analysis

705

Amino Acids

77.54

Weight (kDa)

5.33

Isoelectric Point (pI)

50.26

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
TPR_12 PF13424 332 - 391 2.4e-07 Tetratricopeptide repeat
TPR_MalT PF17874 373 - 520 2e-07 MalT-like TPR region
TPR_NPHP3 PF24885 404 - 527 1.9e-09 Nephrocystin-3 TPR domain
TPR_12 PF13424 406 - 479 4e-10 Tetratricopeptide repeat
TPR_12 PF13424 450 - 523 4.2e-09 Tetratricopeptide repeat
TPR_12 PF13424 578 - 647 8.9e-11 Tetratricopeptide repeat
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0010792)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G27960 AT3G27960 AT3G27960
fragaria_vesca FvH4_6g50730
malus_domestica MD09G1033100.v1.1 MD17G1034400.v1.1
prunus_persica Prupe.3G285200_v2.0.a1 Prupe.3G285200_v2.0.a1
pyrus_communis pycom111g02640 pycom17g03180
rosa_chinensis RchiOBHm_Chr2g0171671
rosa_laevigata RLG00000022027
rosa_multiflora Rmu_ssc0000252.1_g000009
rosa_roxburghii Rroxscaffold_2G00080540
rosa_rugosa Rorug02G0555200
rosa_samantha Rh2AG630200 Rh2BG640700 Rh2BG643200 Rh2CG609000
rosa_wichuraiana Rw2G052150

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 2 cut(s) 917, 1887
AccB7I CCANNNNNTGG 1 cut(s) 1454
AccII CGCG 1 cut(s) 798
AciI CCGC 3 cut(s) 798, 1103, 1990
AclWI GGATC 3 cut(s) 244, 548, 561
AcoI YGGCCR 4 cut(s) 148, 826, 1204, 1977
AcsI RAATTY 2 cut(s) 904, 1917
AcuI CTGAAG 1 cut(s) 521
AfaI GTAC 6 cut(s) 352, 694, 770, 1594, 1649, 2109
AfiI CCNNNNNNNGG 8 cut(s) 146, 444, 587, 974, 1266, 1454, 1692, 1725
AflII CTTAAG 2 cut(s) 602, 1547
AflIII ACRYGT 1 cut(s) 983
AjnI CCWGG 4 cut(s) 221, 1453, 1579, 1805
AjuI GAANNNNNNNTTGG 6 cut(s) 1917, 1938, 1949, 1970, 1979, 2011
AloI GAACNNNNNNTCC 2 cut(s) 1951, 1983
Alw21I GWGCWC 1 cut(s) 206
Alw26I GTCTC 3 cut(s) 974, 1325, 2048
AlwI GGATC 3 cut(s) 244, 548, 561
ApeKI GCWGC 5 cut(s) 172, 756, 1157, 1220, 1784
ApoI RAATTY 2 cut(s) 904, 1917
ArsI GACNNNNNNTTYG 2 cut(s) 956, 988
AspA2I CCTAGG 1 cut(s) 422
AspLEI GCGC 2 cut(s) 652, 798
AspS9I GGNCC 5 cut(s) 590, 1054, 1534, 1695, 1832
AsuC2I CCSGG 1 cut(s) 643
AsuHPI GGTGA 8 cut(s) 406, 644, 884, 989, 1583, 1832, 2038, 2105
AvaII GGWCC 1 cut(s) 590
AvrII CCTAGG 1 cut(s) 422
BalI TGGCCA 2 cut(s) 828, 1206
BamHI GGATCC 1 cut(s) 553
BanII GRGCYC 1 cut(s) 206
BbsI GAAGAC 1 cut(s) 1120
Bbv12I GWGCWC 1 cut(s) 206
BbvCI CCTCAGC 1 cut(s) 999
BbvI GCAGC 5 cut(s) 184, 768, 1144, 1232, 1771
BccI CCATC 5 cut(s) 140, 226, 818, 1612, 1633
BceAI ACGGC 1 cut(s) 1977
BcgI CGANNNNNNTGC 2 cut(s) 1199, 1233
BciT130I CCWGG 4 cut(s) 223, 1455, 1581, 1807
BclI TGATCA 1 cut(s) 208
BcnI CCSGG 1 cut(s) 643
BcoDI GTCTC 3 cut(s) 974, 1325, 2048
BfaI CTAG 6 cut(s) 228, 423, 842, 1479, 1751, 2051
BfmI CTRYAG 3 cut(s) 816, 1464, 1785
BfoI RGCGCY 1 cut(s) 653
BfrI CTTAAG 2 cut(s) 602, 1547
BfuAI ACCTGC 2 cut(s) 917, 1887
BisI GCNGC 7 cut(s) 173, 757, 799, 1104, 1158, 1221, 1785
BlnI CCTAGG 1 cut(s) 422
BlsI GCNGC 7 cut(s) 174, 758, 800, 1105, 1159, 1222, 1786
BmcAI AGTACT 1 cut(s) 1649
Bme1390I CCNGG 5 cut(s) 223, 643, 1455, 1581, 1807
Bme18I GGWCC 1 cut(s) 590
BmgT120I GGNCC 5 cut(s) 590, 1054, 1534, 1695, 1832
BmiI GGNNCC 2 cut(s) 555, 592
BmrFI CCNGG 5 cut(s) 223, 643, 1455, 1581, 1807
BmrI ACTGGG 2 cut(s) 702, 878
BmsI GCATC 6 cut(s) 390, 752, 1207, 1237, 1876, 1897
BmuI ACTGGG 2 cut(s) 702, 878
BpiI GAAGAC 1 cut(s) 1120
BplI GAGNNNNNCTC 4 cut(s) 418, 450, 542, 574
Bpu10I CCTNAGC 2 cut(s) 760, 999
BpuEI CTTGAG 5 cut(s) 674, 812, 1115, 1184, 1523
BpuMI CCSGG 1 cut(s) 643
BsaBI GATNNNNATC 1 cut(s) 1251
BsaJI CCNNGG 5 cut(s) 222, 422, 641, 1260, 1579
BsaWI WCCGGW 1 cut(s) 1362
BsaXI ACNNNNNCTCC 6 cut(s) 343, 373, 1394, 1424, 1640, 1670
Bsc4I CCNNNNNNNGG 8 cut(s) 146, 444, 587, 974, 1266, 1454, 1692, 1725
Bse1I ACTGG 5 cut(s) 708, 766, 785, 873, 1698
Bse3DI GCAATG 4 cut(s) 751, 891, 1016, 1896
Bse8I GATNNNNATC 1 cut(s) 1251
BseBI CCWGG 4 cut(s) 223, 1455, 1581, 1807
BseDI CCNNGG 5 cut(s) 222, 422, 641, 1260, 1579
BseGI GGATG 9 cut(s) 10, 151, 218, 298, 534, 829, 1336, 1909, 1944
BseJI GATNNNNATC 1 cut(s) 1251
BseLI CCNNNNNNNGG 8 cut(s) 146, 444, 587, 974, 1266, 1454, 1692, 1725
BseMI GCAATG 4 cut(s) 751, 891, 1016, 1896
BseMII CTCAG 6 cut(s) 240, 497, 990, 1026, 1628, 1665
BseNI ACTGG 5 cut(s) 708, 766, 785, 873, 1698
BseRI GAGGAG 2 cut(s) 478, 1112
BseXI GCAGC 5 cut(s) 184, 768, 1144, 1232, 1771
BsgI GTGCAG 1 cut(s) 1781
Bsh1236I CGCG 1 cut(s) 798
BsiHKAI GWGCWC 1 cut(s) 206
BsiSI CCGG 3 cut(s) 151, 643, 1363
BslFI GGGAC 2 cut(s) 624, 1137
BslI CCNNNNNNNGG 8 cut(s) 146, 444, 587, 974, 1266, 1454, 1692, 1725
BsmAI GTCTC 3 cut(s) 974, 1325, 2048
BsmFI GGGAC 2 cut(s) 624, 1137
Bsp1286I GDGCHC 1 cut(s) 206
Bsp1407I TGTACA 1 cut(s) 692
Bsp143I GATC 6 cut(s) 208, 236, 553, 583, 1372, 2045
BspACI CCGC 3 cut(s) 798, 1103, 1990
BspCNI CTCAG 6 cut(s) 241, 498, 991, 1027, 1627, 1664
BspFNI CGCG 1 cut(s) 798
BspLI GGNNCC 2 cut(s) 555, 592
BspMAI CTGCAG 2 cut(s) 1468, 1789
BspMI ACCTGC 2 cut(s) 917, 1887
BspPI GGATC 3 cut(s) 244, 548, 561
BspQI GCTCTTC 1 cut(s) 669
BspTI CTTAAG 2 cut(s) 602, 1547
BsrDI GCAATG 4 cut(s) 751, 891, 1016, 1896
BsrGI TGTACA 1 cut(s) 692
BsrI ACTGG 5 cut(s) 708, 766, 785, 873, 1698
BssECI CCNNGG 5 cut(s) 222, 422, 641, 1260, 1579
BssMI GATC 6 cut(s) 208, 236, 553, 583, 1372, 2045
BssT1I CCWWGG 2 cut(s) 422, 1260
Bst2UI CCWGG 4 cut(s) 223, 1455, 1581, 1807
Bst4CI ACNGT 4 cut(s) 915, 1309, 1418, 2112
Bst6I CTCTTC 4 cut(s) 669, 1464, 1941, 2083
BstAFI CTTAAG 2 cut(s) 602, 1547
BstAPI GCANNNNNTGC 1 cut(s) 1286
BstAUI TGTACA 1 cut(s) 692
BstC8I GCNNGC 6 cut(s) 609, 863, 1183, 1533, 1876, 2020
BstDEI CTNAG 9 cut(s) 249, 411, 506, 760, 999, 1035, 1614, 1651, 1816
BstF5I GGATG 9 cut(s) 10, 151, 218, 298, 534, 829, 1336, 1909, 1944
BstFNI CGCG 1 cut(s) 798
BstH2I RGCGCY 1 cut(s) 653
BstHHI GCGC 2 cut(s) 652, 798
BstKTI GATC 6 cut(s) 211, 239, 556, 586, 1375, 2048
BstMAI GTCTC 3 cut(s) 974, 1325, 2048
BstMBI GATC 6 cut(s) 208, 236, 553, 583, 1372, 2045
BstMWI GCNNNNNNNGC 5 cut(s) 668, 762, 851, 1256, 1286
BstNI CCWGG 4 cut(s) 223, 1455, 1581, 1807
BstNSI RCATGY 5 cut(s) 483, 737, 865, 987, 1189
BstSCI CCNGG 5 cut(s) 221, 641, 1453, 1579, 1805
BstSFI CTRYAG 3 cut(s) 816, 1464, 1785
BstUI CGCG 1 cut(s) 798
BstV1I GCAGC 5 cut(s) 184, 768, 1144, 1232, 1771
BstV2I GAAGAC 1 cut(s) 1120
BstX2I RGATCY 1 cut(s) 553
BstYI RGATCY 1 cut(s) 553
BtsCI GGATG 9 cut(s) 10, 151, 218, 298, 534, 829, 1336, 1909, 1944
BtsI GCAGTG 3 cut(s) 678, 1769, 2067
BtsIMutI CAGTG 6 cut(s) 492, 678, 1301, 1705, 1769, 2067
BveI ACCTGC 2 cut(s) 917, 1887
Cac8I GCNNGC 6 cut(s) 609, 863, 1183, 1533, 1876, 2020
CfoI GCGC 2 cut(s) 652, 798
Cfr13I GGNCC 5 cut(s) 590, 1054, 1534, 1695, 1832
Csp6I GTAC 6 cut(s) 351, 693, 769, 1593, 1648, 2108
CviQI GTAC 6 cut(s) 351, 693, 769, 1593, 1648, 2108
DdeI CTNAG 9 cut(s) 249, 411, 506, 760, 999, 1035, 1614, 1651, 1816
DpnI GATC 6 cut(s) 210, 238, 555, 585, 1374, 2047
DpnII GATC 6 cut(s) 208, 236, 553, 583, 1372, 2045
EaeI YGGCCR 4 cut(s) 148, 826, 1204, 1977
Eam1104I CTCTTC 4 cut(s) 669, 1464, 1941, 2083
EarI CTCTTC 4 cut(s) 669, 1464, 1941, 2083
Ecl136II GAGCTC 1 cut(s) 204
Eco130I CCWWGG 2 cut(s) 422, 1260
Eco147I AGGCCT 1 cut(s) 448
Eco24I GRGCYC 1 cut(s) 206
Eco47I GGWCC 1 cut(s) 590
Eco53kI GAGCTC 1 cut(s) 204
Eco57I CTGAAG 1 cut(s) 521
EcoICRI GAGCTC 1 cut(s) 204
EcoO109I RGGNCCY 1 cut(s) 1534
EcoRI GAATTC 1 cut(s) 904
EcoRII CCWGG 4 cut(s) 221, 1453, 1579, 1805
EcoT14I CCWWGG 2 cut(s) 422, 1260
EcoT22I ATGCAT 1 cut(s) 481
EcoT38I GRGCYC 1 cut(s) 206
ErhI CCWWGG 2 cut(s) 422, 1260
FalI AAGNNNNNCTT 6 cut(s) 502, 534, 1146, 1178, 1938, 1970
FaqI GGGAC 2 cut(s) 624, 1137
FbaI TGATCA 1 cut(s) 208
Fnu4HI GCNGC 7 cut(s) 173, 757, 799, 1104, 1158, 1221, 1785
FokI GGATG 9 cut(s) 17, 158, 205, 285, 541, 836, 1323, 1916, 1951
FriOI GRGCYC 1 cut(s) 206
Fsp4HI GCNGC 7 cut(s) 173, 757, 799, 1104, 1158, 1221, 1785
FspBI CTAG 6 cut(s) 228, 423, 842, 1479, 1751, 2051
GlaI GCGC 2 cut(s) 651, 797
GluI GCNGC 7 cut(s) 173, 757, 799, 1104, 1158, 1221, 1785
HaeII RGCGCY 1 cut(s) 653
HapII CCGG 3 cut(s) 151, 643, 1363
HhaI GCGC 2 cut(s) 652, 798
Hin6I GCGC 2 cut(s) 650, 796
HinP1I GCGC 2 cut(s) 650, 796
HincII GTYRAC 1 cut(s) 1586
HindII GTYRAC 1 cut(s) 1586
HindIII AAGCTT 2 cut(s) 533, 1952
HpaII CCGG 3 cut(s) 151, 643, 1363
HphI GGTGA 8 cut(s) 406, 644, 884, 989, 1583, 1832, 2038, 2105
Hpy166II GTNNAC 1 cut(s) 1586
Hpy188I TCNGA 9 cut(s) 90, 208, 268, 444, 540, 897, 1617, 1654, 1737
Hpy188III TCNNGA 8 cut(s) 302, 362, 791, 1163, 1294, 1672, 1970, 2063
Hpy8I GTNNAC 1 cut(s) 1586
HpyAV CCTTC 6 cut(s) 59, 604, 640, 1546, 1678, 1816
HpyCH4III ACNGT 4 cut(s) 915, 1309, 1418, 2112
HpyF10VI GCNNNNNNNGC 5 cut(s) 668, 762, 851, 1256, 1286
HpyF3I CTNAG 9 cut(s) 249, 411, 506, 760, 999, 1035, 1614, 1651, 1816
HspAI GCGC 2 cut(s) 650, 796
Ksp22I TGATCA 1 cut(s) 208
Kzo9I GATC 6 cut(s) 208, 236, 553, 583, 1372, 2045
LguI GCTCTTC 1 cut(s) 669
LmnI GCTCC 3 cut(s) 245, 426, 1528
Lsp1109I GCAGC 5 cut(s) 184, 768, 1144, 1232, 1771
LweI GCATC 6 cut(s) 390, 752, 1207, 1237, 1876, 1897
MaeI CTAG 6 cut(s) 228, 423, 842, 1479, 1751, 2051
MaeIII GTNAC 5 cut(s) 122, 872, 1133, 1542, 2093
MalI GATC 6 cut(s) 210, 238, 555, 585, 1374, 2047
MboI GATC 6 cut(s) 208, 236, 553, 583, 1372, 2045
MboII GAAGA 9 cut(s) 409, 508, 656, 1125, 1481, 1573, 1811, 1958, 2100
MfeI CAATTG 2 cut(s) 1227, 1596
MflI RGATCY 1 cut(s) 553
MhlI GDGCHC 1 cut(s) 206
MlsI TGGCCA 2 cut(s) 828, 1206
MluCI AATT 8 cut(s) 780, 904, 1227, 1596, 1605, 1867, 1917, 2082
MluNI TGGCCA 2 cut(s) 828, 1206
MmeI TCCRAC 1 cut(s) 1881
Mox20I TGGCCA 2 cut(s) 828, 1206
Mph1103I ATGCAT 1 cut(s) 481
MscI TGGCCA 2 cut(s) 828, 1206
MseI TTAA 4 cut(s) 603, 1314, 1398, 1548
MslI CAYNNNNRTG 3 cut(s) 134, 303, 1190
Msp20I TGGCCA 2 cut(s) 828, 1206
MspA1I CMGCKG 1 cut(s) 175
MspCI CTTAAG 2 cut(s) 602, 1547
MspI CCGG 3 cut(s) 151, 643, 1363
MspR9I CCNGG 5 cut(s) 223, 643, 1455, 1581, 1807
MunI CAATTG 2 cut(s) 1227, 1596
MvaI CCWGG 4 cut(s) 223, 1455, 1581, 1807
MvnI CGCG 1 cut(s) 798
MwoI GCNNNNNNNGC 5 cut(s) 668, 762, 851, 1256, 1286
NciI CCSGG 1 cut(s) 643
NdeII GATC 6 cut(s) 208, 236, 553, 583, 1372, 2045
NlaIV GGNNCC 2 cut(s) 555, 592
NmuCI GTSAC 4 cut(s) 122, 872, 1133, 2093
NsiI ATGCAT 1 cut(s) 481
NspI RCATGY 5 cut(s) 483, 737, 865, 987, 1189
PaeI GCATGC 1 cut(s) 865
PceI AGGCCT 1 cut(s) 448
PciI ACATGT 1 cut(s) 983
PciSI GCTCTTC 1 cut(s) 669
PfeI GAWTC 4 cut(s) 263, 274, 1458, 1574
PflMI CCANNNNNTGG 1 cut(s) 1454
PfoI TCCNGGA 1 cut(s) 1453
PkrI GCNGC 7 cut(s) 174, 758, 800, 1105, 1159, 1222, 1786
PscI ACATGT 1 cut(s) 983
Psp124BI GAGCTC 1 cut(s) 206
Psp6I CCWGG 4 cut(s) 221, 1453, 1579, 1805
PspGI CCWGG 4 cut(s) 221, 1453, 1579, 1805
PspN4I GGNNCC 2 cut(s) 555, 592
PspPI GGNCC 5 cut(s) 590, 1054, 1534, 1695, 1832
PstI CTGCAG 2 cut(s) 1468, 1789
PsuI RGATCY 1 cut(s) 553
PvuII CAGCTG 1 cut(s) 175
RsaI GTAC 6 cut(s) 352, 694, 770, 1594, 1649, 2109
RsaNI GTAC 6 cut(s) 351, 693, 769, 1593, 1648, 2108
RseI CAYNNNNRTG 3 cut(s) 134, 303, 1190
SacI GAGCTC 1 cut(s) 206
SapI GCTCTTC 1 cut(s) 669
SaqAI TTAA 4 cut(s) 603, 1314, 1398, 1548
SatI GCNGC 7 cut(s) 173, 757, 799, 1104, 1158, 1221, 1785
Sau3AI GATC 6 cut(s) 208, 236, 553, 583, 1372, 2045
Sau96I GGNCC 5 cut(s) 590, 1054, 1534, 1695, 1832
ScaI AGTACT 1 cut(s) 1649
ScrFI CCNGG 5 cut(s) 223, 643, 1455, 1581, 1807
SduI GDGCHC 1 cut(s) 206
SfaNI GCATC 6 cut(s) 390, 752, 1207, 1237, 1876, 1897
SfcI CTRYAG 3 cut(s) 816, 1464, 1785
SinI GGWCC 1 cut(s) 590
SmiMI CAYNNNNRTG 3 cut(s) 134, 303, 1190
SmlI CTYRAG 7 cut(s) 602, 653, 791, 1094, 1163, 1538, 1547
SmoI CTYRAG 7 cut(s) 602, 653, 791, 1094, 1163, 1538, 1547
SphI GCATGC 1 cut(s) 865
Sse9I AATT 8 cut(s) 780, 904, 1227, 1596, 1605, 1867, 1917, 2082
SseBI AGGCCT 1 cut(s) 448
SsiI CCGC 3 cut(s) 798, 1103, 1990
SspMI CTAG 6 cut(s) 228, 423, 842, 1479, 1751, 2051
SstI GAGCTC 1 cut(s) 206
StuI AGGCCT 1 cut(s) 448
StyD4I CCNGG 5 cut(s) 221, 641, 1453, 1579, 1805
StyI CCWWGG 2 cut(s) 422, 1260
TaaI ACNGT 4 cut(s) 915, 1309, 1418, 2112
TaqI TCGA 6 cut(s) 164, 254, 494, 549, 970, 2064
TasI AATT 8 cut(s) 780, 904, 1227, 1596, 1605, 1867, 1917, 2082
TatI WGTACW 4 cut(s) 692, 768, 1592, 1647
TauI GCSGC 2 cut(s) 801, 1106
TfiI GAWTC 4 cut(s) 263, 274, 1458, 1574
Tru1I TTAA 4 cut(s) 603, 1314, 1398, 1548
Tru9I TTAA 4 cut(s) 603, 1314, 1398, 1548
TscAI CASTG 6 cut(s) 492, 678, 1308, 1705, 1769, 2074
TseFI GTSAC 4 cut(s) 122, 872, 1133, 2093
TseI GCWGC 5 cut(s) 172, 756, 1157, 1220, 1784
Tsp45I GTSAC 4 cut(s) 122, 872, 1133, 2093
TspDTI ATGAA 5 cut(s) 21, 287, 545, 1167, 1532
TspRI CASTG 6 cut(s) 492, 678, 1308, 1705, 1769, 2074
Van91I CCANNNNNTGG 1 cut(s) 1454
Vha464I CTTAAG 2 cut(s) 602, 1547
VpaK11BI GGWCC 1 cut(s) 590
XapI RAATTY 2 cut(s) 904, 1917
XceI RCATGY 5 cut(s) 483, 737, 865, 987, 1189
XcmI CCANNNNNNNNNTGG 3 cut(s) 715, 1073, 1918
XmaJI CCTAGG 1 cut(s) 422
XspI CTAG 6 cut(s) 228, 423, 842, 1479, 1751, 2051
ZrmI AGTACT 1 cut(s) 1649
Zsp2I ATGCAT 1 cut(s) 481
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.