FvH4_6g50730

Tetratricopeptide repeat

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb6
OG0010792
Physical Location & Seq
Forward (+)
37706045 .. 37709696
3652 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_6g50730.t1

Sequence Viewer

Length: 2127 bp
ATGCCTGGATTAGCTATGGATGAAGTGAATGGGAACGGTGTGGTAGATGAGCACAGTGGAGAGTATACACCTCACAAGGAGGGGTATAATCAGCAAGGCTCTCCTAGGAGTCCATTGAATCCTCAAAGTCCTCATAGTGACTCCACTGGTATGCCTATGGATGGCCCGATTGACACATCAATTGAGCAGCTGTATCACAATGTATGTGAAATGCAGAGCTCTGATCAGTCTCCATCCAGGGCTAGTTTTGGATCATTTGGCGCTGAGTCGAGGATTGATTCAGAATTGAATCATCTTGTTGGGTATGTTCGTGCAGATGTGGAGGTAAGGAAAGAGGTTGTTATGGAAACCAAAGAGAGTACCTTTACTCCTGAAAAGGAAAATGTGTCTGTGGAGACAAGGGTGAAGGCTCAGTCTCCTAAGATGAGTCCTAAGAGCAAGTCTCCCAATCAGAGGCCTCCACTTGACAAGAAGACTCCAAGAAATGCAAGTTCAGTGATGTCGAAGAACAAGCTGAGAAGTTTAGCTTTACGAGGAATGAAGCTTCAGAATGGAGTTGAGGATCCCTCTGTGGAGGGATTGGATAACTCTGACCTTGGACCCTTCTTGCTTAAGCAAGCAAGGGATATGATTTCTGCTGGTGAAAGTCCCCACAAGGCACTTGAGTTAGCTCGTCGGGCAGTGAAATCGTTTGAGAAATGTACAACCGAGAAACCCAGTTTAGAGTTGGTCATGTGTTTGCATGTTTTGGCATCAATCTATTGCAGCTTAGGACAGTACAATGAGGCAATTCCAGTTCTTGAGCACGCTATTGACATTCCAGCTATAGAGGATGGCAATGACCACGCACTAGCCAAGTTTGCAGGGTGCATGCAATTGGGTGATATTTATGCAATGACTGGTCAGATTGAGAATTCGATACTGTTCTACACTGCAGGTATGGAGATACAAAGGCAAGTCTTGGGAGAAACAGACCCTCGATTTGGTGAGACATGTCGATATGTAGCTGAGGCACATGTCCAAGCATTGCAGTTTGATGAGGCTGAGAAGCTGTGTCTAATGGCCCTTGAAATCCACAGGGAGAATGGTACTCCTGCTTCACTTGAGGAGGCGGCAGATAGAAGACTTATGGGACTTATCTGTGACTCAAAGGGAGATTATGAAGCTGCTCTTGAGCATTATGTTTTAGCTGGCATGTCCATGTCTGCCAATGACCACGAAACAGATGCAGCTTCAATTGATTGCAGCATTGGAGATGCTTATCTGTCCTTGGCTCGGTATGATGAGGCAGTCTTTGCTTTCCAGAAAGCACTGACAGTATTCAAGAGCACTAAAGGAGAAACACATCCAGCAGTAGCATCTGTTTATGTCCGGTTAGCTGATCTTTACAACAAGATAGGGAAGTTTAAGGAGTCCAAGTCGTACTGTGAAAATGCACACAAAATCTATGGGAAGCCAAATCCTGGAATCCCCGCAGAAGAGATTGCTAGCGGTCTTATTGATGTTTCTGCTATCTATCAGTCTATGAGTGATTTGGAGCAGGCCCTCAAGTTACTCAAGAAGGCTTTGAAGATGTTTGGTGATTCCCCAGGTCAACAAAGTACAATTGCAGGAATTGAGGCTCAGATGGGGGTCATGTACTATATGATGGGAAATTATTCAGACTCATACAACACCTTCAAGAGTTCCACAACCAAGTTCAGGGCCAGTGGAGAAAAGAAATCAGCCTTGTTTGGGATTGCTCTAAACCAAATGGGTCTAGCCTGTGTGCAGCGCTATTCAATAAACGAGGCTGCAGACCTGTTTGAAGAAGCCAGGAACATTTTAGAAAAGGAATATGGGCCATACCACCCTGATACATTGGGCGTGTATAGTAATTTGGCTGGCACATATGATGCAATGGGCAGGGTGGATGATGCCATTGAAATTTTGGAATATGTTGTTGGGATGAGAGAAGAGAAGCTTGGAACGGCAAATCCTGATGTGACCGATGAGAAGCAGAGGTTGGCTGTGTTGTTGAAAGAAGCAGGCAGGGTGAGGAGCAGGAAAACCAGATCACTAGAGACACTCCTCGACACTGCCAACCCCCAGATTACAAGAAGCAGTGACATTATTGAGGTACTGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000003 GO:0000902 GO:0000904 GO:0001655 GO:0001822 GO:0001889 GO:0001894 GO:0001895 GO:0001947 GO:0002009 GO:0003006 GO:0003007 GO:0003143 GO:0003205 GO:0003230 GO:0003279 GO:0003283 GO:0003341 GO:0003351 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005886 GO:0005929 GO:0006928 GO:0006996 GO:0007017 GO:0007018 GO:0007275 GO:0007368 GO:0007369 GO:0007389 GO:0007507 GO:0008150 GO:0009653 GO:0009790 GO:0009799 GO:0009826 GO:0009855 GO:0009856 GO:0009860 GO:0009887 GO:0009888 GO:0009932 GO:0009966 GO:0009968 GO:0009987 GO:0010646 GO:0010648 GO:0016020 GO:0016043 GO:0016049 GO:0022414 GO:0022603 GO:0022607 GO:0023051 GO:0023057 GO:0030030 GO:0030031 GO:0030111 GO:0030154 GO:0030178 GO:0030323 GO:0030324 GO:0031016 GO:0031347 GO:0032501 GO:0032502 GO:0032989 GO:0035050 GO:0035239 GO:0035295 GO:0035469 GO:0040007 GO:0042592 GO:0042995 GO:0043226 GO:0044085 GO:0044424 GO:0044444 GO:0044464 GO:0044706 GO:0044782 GO:0045494 GO:0045595 GO:0045596 GO:0045995 GO:0048468 GO:0048496 GO:0048513 GO:0048519 GO:0048523 GO:0048562 GO:0048565 GO:0048568 GO:0048583 GO:0048585 GO:0048588 GO:0048589 GO:0048598 GO:0048729 GO:0048731 GO:0048732 GO:0048856 GO:0048868 GO:0048869 GO:0048871 GO:0050789 GO:0050793 GO:0050794 GO:0051093 GO:0051239 GO:0051704 GO:0051960 GO:0055123 GO:0060026 GO:0060027 GO:0060249 GO:0060271 GO:0060287 GO:0060429 GO:0060541 GO:0060560 GO:0060562 GO:0060828 GO:0060993 GO:0061008 GO:0061371 GO:0065007 GO:0065008 GO:0070925 GO:0071840 GO:0071907 GO:0071908 GO:0071909 GO:0071910 GO:0071944 GO:0072001 GO:0072189 GO:0072359 GO:0080134 GO:0090090 GO:0090175 GO:0090178 GO:0120025 GO:0120031 GO:0120036 GO:1905276 GO:1905330 GO:2000026 GO:2000027 GO:2000050 GO:2000095 GO:2000167
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
TPR_10 TPR_12 TPR_7 TPR_8

Protein Analysis

709

Amino Acids

77.82

Weight (kDa)

5.15

Isoelectric Point (pI)

47.02

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
TPR_12 PF13424 335 - 394 6e-07 Tetratricopeptide repeat
TPR_MalT PF17874 377 - 523 1.2e-06 MalT-like TPR region
TPR_NPHP3 PF24885 405 - 530 1.6e-08 Nephrocystin-3 TPR domain
TPR_12 PF13424 410 - 483 5.7e-10 Tetratricopeptide repeat
TPR_12 PF13424 453 - 526 1.4e-08 Tetratricopeptide repeat
TPR_12 PF13424 580 - 650 2.5e-10 Tetratricopeptide repeat
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0010792)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G27960 AT3G27960 AT3G27960
fragaria_vesca FvH4_6g50730
malus_domestica MD09G1033100.v1.1 MD17G1034400.v1.1
prunus_persica Prupe.3G285200_v2.0.a1 Prupe.3G285200_v2.0.a1
pyrus_communis pycom111g02640 pycom17g03180
rosa_chinensis RchiOBHm_Chr2g0171671
rosa_laevigata RLG00000022027
rosa_multiflora Rmu_ssc0000252.1_g000009
rosa_roxburghii Rroxscaffold_2G00080540
rosa_rugosa Rorug02G0555200
rosa_samantha Rh2AG630200 Rh2BG640700 Rh2BG643200 Rh2CG609000
rosa_wichuraiana Rw2G052150

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 926
AccB7I CCANNNNNTGG 1 cut(s) 1463
AccI GTMKAC 1 cut(s) 65
AciI CCGC 3 cut(s) 1112, 1473, 1491
AclWI GGATC 3 cut(s) 259, 557, 570
AcsI RAATTY 2 cut(s) 913, 1926
AcuI CTGAAG 1 cut(s) 530
AfaI GTAC 8 cut(s) 361, 703, 779, 1090, 1424, 1603, 1640, 2121
AfeI AGCGCT 1 cut(s) 1775
AfiI CCNNNNNNNGG 7 cut(s) 161, 453, 983, 1275, 1463, 1701, 1734
AflII CTTAAG 1 cut(s) 611
AflIII ACRYGT 2 cut(s) 992, 1015
AjnI CCWGG 5 cut(s) 4, 236, 1462, 1588, 1814
AjuI GAANNNNNNNTTGG 6 cut(s) 1926, 1947, 1958, 1979, 1988, 2020
AloI GAACNNNNNNTCC 2 cut(s) 1960, 1992
Alw21I GWGCWC 4 cut(s) 54, 221, 807, 1331
Alw26I GTCTC 6 cut(s) 234, 389, 420, 447, 983, 2057
AlwI GGATC 3 cut(s) 259, 557, 570
Aor51HI AGCGCT 1 cut(s) 1775
AoxI GGCC 6 cut(s) 163, 455, 1062, 1542, 1704, 1841
ApeKI GCWGC 7 cut(s) 187, 765, 1166, 1229, 1245, 1771, 1793
ApoI RAATTY 2 cut(s) 913, 1926
ArsI GACNNNNNNTTYG 2 cut(s) 965, 997
Asp700I GAANNNNTTC 1 cut(s) 1657
AspA2I CCTAGG 1 cut(s) 104
AspLEI GCGC 2 cut(s) 263, 1776
AspS9I GGNCC 6 cut(s) 164, 599, 1063, 1543, 1704, 1841
AsuHPI GGTGA 6 cut(s) 415, 653, 893, 998, 1592, 2047
AsuNHI GCTAGC 1 cut(s) 1487
AvaII GGWCC 1 cut(s) 599
AvrII CCTAGG 1 cut(s) 104
BamHI GGATCC 1 cut(s) 562
BanII GRGCYC 1 cut(s) 221
BarI GAAGNNNNNNTAC 2 cut(s) 1081, 1113
BbsI GAAGAC 2 cut(s) 479, 1129
Bbv12I GWGCWC 4 cut(s) 54, 221, 807, 1331
BbvCI CCTCAGC 1 cut(s) 1008
BbvI GCAGC 7 cut(s) 199, 777, 1153, 1241, 1257, 1780, 1783
BccI CCATC 5 cut(s) 155, 241, 827, 1621, 1642
BceAI ACGGC 1 cut(s) 1986
BcgI CGANNNNNNTGC 4 cut(s) 669, 703, 1208, 1242
BciT130I CCWGG 5 cut(s) 6, 238, 1464, 1590, 1816
BclI TGATCA 1 cut(s) 223
BcoDI GTCTC 6 cut(s) 234, 389, 420, 447, 983, 2057
BfaI CTAG 6 cut(s) 105, 243, 851, 1488, 1760, 2060
BfmI CTRYAG 3 cut(s) 825, 933, 1794
BfoI RGCGCY 2 cut(s) 264, 1777
BfrI CTTAAG 1 cut(s) 611
BfuAI ACCTGC 1 cut(s) 926
BisI GCNGC 8 cut(s) 188, 766, 1113, 1167, 1230, 1246, 1772, 1794
BlnI CCTAGG 1 cut(s) 104
BlsI GCNGC 8 cut(s) 189, 767, 1114, 1168, 1231, 1247, 1773, 1795
Bme1390I CCNGG 5 cut(s) 6, 238, 1464, 1590, 1816
Bme18I GGWCC 1 cut(s) 599
BmgT120I GGNCC 6 cut(s) 164, 599, 1063, 1543, 1704, 1841
BmiI GGNNCC 2 cut(s) 564, 601
BmrFI CCNGG 5 cut(s) 6, 238, 1464, 1590, 1816
BmrI ACTGGG 1 cut(s) 711
BmsI GCATC 6 cut(s) 761, 1216, 1246, 1367, 1885, 1906
BmtI GCTAGC 1 cut(s) 1491
BmuI ACTGGG 1 cut(s) 711
BpiI GAAGAC 2 cut(s) 479, 1129
BplI GAGNNNNNCTC 4 cut(s) 427, 459, 551, 583
Bpu10I CCTNAGC 2 cut(s) 769, 1008
BpuEI CTTGAG 6 cut(s) 683, 821, 1124, 1193, 1532, 1541
BsaBI GATNNNNATC 1 cut(s) 1260
BsaJI CCNNGG 5 cut(s) 104, 237, 595, 1269, 1588
BsaWI WCCGGW 1 cut(s) 1371
BsaXI ACNNNNNCTCC 4 cut(s) 352, 382, 1403, 1433
Bsc4I CCNNNNNNNGG 7 cut(s) 161, 453, 983, 1275, 1463, 1701, 1734
Bse1I ACTGG 5 cut(s) 151, 717, 794, 904, 1707
Bse3DI GCAATG 4 cut(s) 844, 900, 1025, 1905
Bse8I GATNNNNATC 1 cut(s) 1260
BseBI CCWGG 5 cut(s) 6, 238, 1464, 1590, 1816
BseDI CCNNGG 5 cut(s) 104, 237, 595, 1269, 1588
BseGI GGATG 7 cut(s) 25, 166, 233, 838, 1345, 1918, 1953
BseJI GATNNNNATC 1 cut(s) 1260
BseLI CCNNNNNNNGG 7 cut(s) 161, 453, 983, 1275, 1463, 1701, 1734
BseMI GCAATG 4 cut(s) 844, 900, 1025, 1905
BseMII CTCAG 6 cut(s) 255, 425, 506, 999, 1035, 1637
BseNI ACTGG 5 cut(s) 151, 717, 794, 904, 1707
BseRI GAGGAG 3 cut(s) 1121, 2053, 2060
BseXI GCAGC 7 cut(s) 199, 777, 1153, 1241, 1257, 1780, 1783
BsgI GTGCAG 2 cut(s) 333, 1790
BshFI GGCC 6 cut(s) 165, 457, 1064, 1544, 1706, 1843
BsiHKAI GWGCWC 4 cut(s) 54, 221, 807, 1331
BsiSI CCGG 1 cut(s) 1372
BslFI GGGAC 2 cut(s) 633, 1146
BslI CCNNNNNNNGG 7 cut(s) 161, 453, 983, 1275, 1463, 1701, 1734
BsmAI GTCTC 6 cut(s) 234, 389, 420, 447, 983, 2057
BsmFI GGGAC 2 cut(s) 633, 1146
BsnI GGCC 6 cut(s) 165, 457, 1064, 1544, 1706, 1843
Bsp1286I GDGCHC 4 cut(s) 54, 221, 807, 1331
Bsp1407I TGTACA 1 cut(s) 701
Bsp143I GATC 5 cut(s) 223, 251, 562, 1381, 2054
BspACI CCGC 3 cut(s) 1112, 1473, 1491
BspANI GGCC 6 cut(s) 165, 457, 1064, 1544, 1706, 1843
BspCNI CTCAG 6 cut(s) 256, 424, 507, 1000, 1036, 1636
BspLI GGNNCC 2 cut(s) 564, 601
BspMAI CTGCAG 2 cut(s) 937, 1798
BspMI ACCTGC 1 cut(s) 926
BspOI GCTAGC 1 cut(s) 1491
BspPI GGATC 3 cut(s) 259, 557, 570
BspTI CTTAAG 1 cut(s) 611
BsrDI GCAATG 4 cut(s) 844, 900, 1025, 1905
BsrGI TGTACA 1 cut(s) 701
BsrI ACTGG 5 cut(s) 151, 717, 794, 904, 1707
BssECI CCNNGG 5 cut(s) 104, 237, 595, 1269, 1588
BssMI GATC 5 cut(s) 223, 251, 562, 1381, 2054
BssNAI GTATAC 1 cut(s) 66
BssT1I CCWWGG 3 cut(s) 104, 595, 1269
Bst1107I GTATAC 1 cut(s) 66
Bst2UI CCWGG 5 cut(s) 6, 238, 1464, 1590, 1816
Bst4CI ACNGT 7 cut(s) 38, 56, 777, 924, 1318, 1427, 2124
Bst6I CTCTTC 2 cut(s) 1473, 1950
BstAFI CTTAAG 1 cut(s) 611
BstAPI GCANNNNNTGC 1 cut(s) 1295
BstAUI TGTACA 1 cut(s) 701
BstC8I GCNNGC 8 cut(s) 618, 807, 872, 1192, 1489, 1542, 1885, 2029
BstDEI CTNAG 9 cut(s) 264, 411, 420, 432, 515, 769, 1008, 1044, 1623
BstF5I GGATG 7 cut(s) 25, 166, 233, 838, 1345, 1918, 1953
BstH2I RGCGCY 2 cut(s) 264, 1777
BstHHI GCGC 2 cut(s) 263, 1776
BstKTI GATC 5 cut(s) 226, 254, 565, 1384, 2057
BstMAI GTCTC 6 cut(s) 234, 389, 420, 447, 983, 2057
BstMBI GATC 5 cut(s) 223, 251, 562, 1381, 2054
BstMWI GCNNNNNNNGC 3 cut(s) 677, 860, 1295
BstNI CCWGG 5 cut(s) 6, 238, 1464, 1590, 1816
BstNSI RCATGY 5 cut(s) 746, 874, 996, 1019, 1198
BstSCI CCNGG 5 cut(s) 4, 236, 1462, 1588, 1814
BstSFI CTRYAG 3 cut(s) 825, 933, 1794
BstV1I GCAGC 7 cut(s) 199, 777, 1153, 1241, 1257, 1780, 1783
BstV2I GAAGAC 2 cut(s) 479, 1129
BstX2I RGATCY 1 cut(s) 562
BstYI RGATCY 1 cut(s) 562
BstZ17I GTATAC 1 cut(s) 66
BsuRI GGCC 6 cut(s) 165, 457, 1064, 1544, 1706, 1843
BtsCI GGATG 7 cut(s) 25, 166, 233, 838, 1345, 1918, 1953
BtsI GCAGTG 4 cut(s) 687, 930, 2076, 2110
BtsIMutI CAGTG 9 cut(s) 61, 144, 501, 687, 930, 1310, 1714, 2076, 2110
BveI ACCTGC 1 cut(s) 926
Cac8I GCNNGC 8 cut(s) 618, 807, 872, 1192, 1489, 1542, 1885, 2029
CfoI GCGC 2 cut(s) 263, 1776
Cfr13I GGNCC 6 cut(s) 164, 599, 1063, 1543, 1704, 1841
Csp6I GTAC 8 cut(s) 360, 702, 778, 1089, 1423, 1602, 1639, 2120
CviAII CATG 8 cut(s) 733, 743, 871, 993, 1016, 1195, 1201, 1636
CviQI GTAC 8 cut(s) 360, 702, 778, 1089, 1423, 1602, 1639, 2120
DdeI CTNAG 9 cut(s) 264, 411, 420, 432, 515, 769, 1008, 1044, 1623
DpnI GATC 5 cut(s) 225, 253, 564, 1383, 2056
DpnII GATC 5 cut(s) 223, 251, 562, 1381, 2054
Eam1104I CTCTTC 2 cut(s) 1473, 1950
EarI CTCTTC 2 cut(s) 1473, 1950
Ecl136II GAGCTC 1 cut(s) 219
Eco130I CCWWGG 3 cut(s) 104, 595, 1269
Eco147I AGGCCT 1 cut(s) 457
Eco24I GRGCYC 1 cut(s) 221
Eco47I GGWCC 1 cut(s) 599
Eco47III AGCGCT 1 cut(s) 1775
Eco53kI GAGCTC 1 cut(s) 219
Eco57I CTGAAG 1 cut(s) 530
EcoICRI GAGCTC 1 cut(s) 219
EcoO109I RGGNCCY 1 cut(s) 1543
EcoRI GAATTC 1 cut(s) 913
EcoRII CCWGG 5 cut(s) 4, 236, 1462, 1588, 1814
EcoT14I CCWWGG 3 cut(s) 104, 595, 1269
EcoT38I GRGCYC 1 cut(s) 221
ErhI CCWWGG 3 cut(s) 104, 595, 1269
FaeI CATG 8 cut(s) 736, 746, 874, 996, 1019, 1198, 1204, 1639
FalI AAGNNNNNCTT 6 cut(s) 511, 543, 1155, 1187, 1947, 1979
FaqI GGGAC 2 cut(s) 633, 1146
FatI CATG 8 cut(s) 732, 742, 870, 992, 1015, 1194, 1200, 1635
FauI CCCGC 1 cut(s) 1480
FauNDI CATATG 1 cut(s) 1891
FbaI TGATCA 1 cut(s) 223
FblI GTMKAC 1 cut(s) 65
Fnu4HI GCNGC 8 cut(s) 188, 766, 1113, 1167, 1230, 1246, 1772, 1794
FokI GGATG 7 cut(s) 32, 173, 220, 845, 1332, 1925, 1960
FriOI GRGCYC 1 cut(s) 221
Fsp4HI GCNGC 8 cut(s) 188, 766, 1113, 1167, 1230, 1246, 1772, 1794
FspBI CTAG 6 cut(s) 105, 243, 851, 1488, 1760, 2060
GlaI GCGC 2 cut(s) 262, 1775
GluI GCNGC 8 cut(s) 188, 766, 1113, 1167, 1230, 1246, 1772, 1794
HaeII RGCGCY 2 cut(s) 264, 1777
HaeIII GGCC 6 cut(s) 165, 457, 1064, 1544, 1706, 1843
HapII CCGG 1 cut(s) 1372
HhaI GCGC 2 cut(s) 263, 1776
Hin1II CATG 8 cut(s) 736, 746, 874, 996, 1019, 1198, 1204, 1639
Hin6I GCGC 2 cut(s) 261, 1774
HinP1I GCGC 2 cut(s) 261, 1774
HincII GTYRAC 1 cut(s) 1595
HindII GTYRAC 1 cut(s) 1595
HindIII AAGCTT 2 cut(s) 542, 1961
HpaII CCGG 1 cut(s) 1372
HphI GGTGA 6 cut(s) 415, 653, 893, 998, 1592, 2047
Hpy166II GTNNAC 2 cut(s) 66, 1595
Hpy188I TCNGA 8 cut(s) 223, 283, 453, 549, 592, 906, 1626, 1663
Hpy188III TCNNGA 8 cut(s) 371, 800, 1172, 1303, 1324, 1558, 1681, 1979
Hpy8I GTNNAC 2 cut(s) 66, 1595
Hpy99I CGWCG 1 cut(s) 678
HpyAV CCTTC 4 cut(s) 400, 613, 1555, 1687
HpyCH4III ACNGT 7 cut(s) 38, 56, 777, 924, 1318, 1427, 2124
HpyF10VI GCNNNNNNNGC 3 cut(s) 677, 860, 1295
HpyF3I CTNAG 9 cut(s) 264, 411, 420, 432, 515, 769, 1008, 1044, 1623
Hsp92II CATG 8 cut(s) 736, 746, 874, 996, 1019, 1198, 1204, 1639
HspAI GCGC 2 cut(s) 261, 1774
Ksp22I TGATCA 1 cut(s) 223
Kzo9I GATC 5 cut(s) 223, 251, 562, 1381, 2054
LmnI GCTCC 2 cut(s) 1537, 2040
Lsp1109I GCAGC 7 cut(s) 199, 777, 1153, 1241, 1257, 1780, 1783
LweI GCATC 6 cut(s) 761, 1216, 1246, 1367, 1885, 1906
MaeI CTAG 6 cut(s) 105, 243, 851, 1488, 1760, 2060
MaeIII GTNAC 5 cut(s) 137, 1142, 1551, 1984, 2105
MalI GATC 5 cut(s) 225, 253, 564, 1383, 2056
MboI GATC 5 cut(s) 223, 251, 562, 1381, 2054
MboII GAAGA 7 cut(s) 484, 517, 1134, 1490, 1582, 1820, 1967
MfeI CAATTG 4 cut(s) 180, 875, 1236, 1605
MflI RGATCY 1 cut(s) 562
MhlI GDGCHC 4 cut(s) 54, 221, 807, 1331
MlyI GAGTC 8 cut(s) 118, 134, 275, 436, 469, 1139, 1421, 1658
MroXI GAANNNNTTC 1 cut(s) 1657
MseI TTAA 2 cut(s) 612, 1407
MslI CAYNNNNRTG 2 cut(s) 149, 1199
MspA1I CMGCKG 1 cut(s) 190
MspCI CTTAAG 1 cut(s) 611
MspI CCGG 1 cut(s) 1372
MspR9I CCNGG 5 cut(s) 6, 238, 1464, 1590, 1816
MunI CAATTG 4 cut(s) 180, 875, 1236, 1605
MvaI CCWGG 5 cut(s) 6, 238, 1464, 1590, 1816
MwoI GCNNNNNNNGC 3 cut(s) 677, 860, 1295
NdeI CATATG 1 cut(s) 1891
NdeII GATC 5 cut(s) 223, 251, 562, 1381, 2054
NheI GCTAGC 1 cut(s) 1487
NlaIII CATG 8 cut(s) 736, 746, 874, 996, 1019, 1198, 1204, 1639
NlaIV GGNNCC 2 cut(s) 564, 601
NmuCI GTSAC 4 cut(s) 137, 1142, 1984, 2105
NspI RCATGY 5 cut(s) 746, 874, 996, 1019, 1198
PaeI GCATGC 1 cut(s) 874
PceI AGGCCT 1 cut(s) 457
PciI ACATGT 2 cut(s) 992, 1015
PdmI GAANNNNTTC 1 cut(s) 1657
PfeI GAWTC 5 cut(s) 118, 278, 289, 1467, 1583
PflMI CCANNNNNTGG 1 cut(s) 1463
PfoI TCCNGGA 1 cut(s) 1462
PkrI GCNGC 8 cut(s) 189, 767, 1114, 1168, 1231, 1247, 1773, 1795
PleI GAGTC 8 cut(s) 117, 134, 274, 435, 469, 1139, 1420, 1658
PpsI GAGTC 8 cut(s) 117, 134, 274, 435, 469, 1139, 1420, 1658
PscI ACATGT 2 cut(s) 992, 1015
Psp124BI GAGCTC 1 cut(s) 221
Psp6I CCWGG 5 cut(s) 4, 236, 1462, 1588, 1814
PspGI CCWGG 5 cut(s) 4, 236, 1462, 1588, 1814
PspN4I GGNNCC 2 cut(s) 564, 601
PspPI GGNCC 6 cut(s) 164, 599, 1063, 1543, 1704, 1841
PstI CTGCAG 2 cut(s) 937, 1798
PsuI RGATCY 1 cut(s) 562
PvuII CAGCTG 1 cut(s) 190
RsaI GTAC 8 cut(s) 361, 703, 779, 1090, 1424, 1603, 1640, 2121
RsaNI GTAC 8 cut(s) 360, 702, 778, 1089, 1423, 1602, 1639, 2120
RseI CAYNNNNRTG 2 cut(s) 149, 1199
SacI GAGCTC 1 cut(s) 221
SaqAI TTAA 2 cut(s) 612, 1407
SatI GCNGC 8 cut(s) 188, 766, 1113, 1167, 1230, 1246, 1772, 1794
Sau3AI GATC 5 cut(s) 223, 251, 562, 1381, 2054
Sau96I GGNCC 6 cut(s) 164, 599, 1063, 1543, 1704, 1841
SchI GAGTC 8 cut(s) 118, 134, 275, 436, 469, 1139, 1421, 1658
ScrFI CCNGG 5 cut(s) 6, 238, 1464, 1590, 1816
SduI GDGCHC 4 cut(s) 54, 221, 807, 1331
SfaNI GCATC 6 cut(s) 761, 1216, 1246, 1367, 1885, 1906
SfcI CTRYAG 3 cut(s) 825, 933, 1794
SinI GGWCC 1 cut(s) 599
SmiMI CAYNNNNRTG 2 cut(s) 149, 1199
SmlI CTYRAG 7 cut(s) 611, 662, 800, 1103, 1172, 1547, 1556
SmoI CTYRAG 7 cut(s) 611, 662, 800, 1103, 1172, 1547, 1556
SphI GCATGC 1 cut(s) 874
SseBI AGGCCT 1 cut(s) 457
SsiI CCGC 3 cut(s) 1112, 1473, 1491
SspMI CTAG 6 cut(s) 105, 243, 851, 1488, 1760, 2060
SstI GAGCTC 1 cut(s) 221
StuI AGGCCT 1 cut(s) 457
StyD4I CCNGG 5 cut(s) 4, 236, 1462, 1588, 1814
StyI CCWWGG 3 cut(s) 104, 595, 1269
TaaI ACNGT 7 cut(s) 38, 56, 777, 924, 1318, 1427, 2124
TaqI TCGA 6 cut(s) 269, 503, 917, 979, 997, 2073
TaqII GACCGA 1 cut(s) 2003
TatI WGTACW 4 cut(s) 701, 777, 1601, 1638
TauI GCSGC 1 cut(s) 1115
TfiI GAWTC 5 cut(s) 118, 278, 289, 1467, 1583
Tru1I TTAA 2 cut(s) 612, 1407
Tru9I TTAA 2 cut(s) 612, 1407
TscAI CASTG 9 cut(s) 61, 151, 501, 687, 937, 1317, 1714, 2083, 2110
TseFI GTSAC 4 cut(s) 137, 1142, 1984, 2105
TseI GCWGC 7 cut(s) 187, 765, 1166, 1229, 1245, 1771, 1793
Tsp45I GTSAC 4 cut(s) 137, 1142, 1984, 2105
TspDTI ATGAA 3 cut(s) 36, 554, 1176
TspRI CASTG 9 cut(s) 61, 151, 501, 687, 937, 1317, 1714, 2083, 2110
Van91I CCANNNNNTGG 1 cut(s) 1463
Vha464I CTTAAG 1 cut(s) 611
VpaK11BI GGWCC 1 cut(s) 599
XapI RAATTY 2 cut(s) 913, 1926
XceI RCATGY 5 cut(s) 746, 874, 996, 1019, 1198
XcmI CCANNNNNNNNNTGG 3 cut(s) 724, 1082, 1927
XmaJI CCTAGG 1 cut(s) 104
XmiI GTMKAC 1 cut(s) 65
XmnI GAANNNNTTC 1 cut(s) 1657
XspI CTAG 6 cut(s) 105, 243, 851, 1488, 1760, 2060
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.