Rorug02G0555200

Tetratricopeptide repeat

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000002
OG0010792
Physical Location & Seq
Reverse (-)
68210579 .. 68215268
4690 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug02G0555200.1

Sequence Viewer

Length: 2004 bp
ATGGCCGCAGCAACAGTAGAAGCTCAGCCATCCAGATCTTCATCAAATGGGCCTGCAGATTCCTACATCGGCAGCCTGATCAGCCTCACCTCCAAGTCCGAAATTCGCTACGAGGGTGTCCTCTTCAACATCAATACCCAAGAGTCCAGCATCGGCTTGAGAAATGTAAGATCGTTTGGGACTGAAGGGCGCAAAATGGATGGTCCACAAATACCTCCAAGTGATAAAGTTTATGAGTATATACTTTTCCGAGGAAGTGACATCAAGGATCTGCAGGTCAAATCTTCGTCTCCGGTTCAAACTAACACACCTGTACACGATGATCCTGCCATTATTCAGACTCACTATTCTCAAGCAGTGACTGCGTCGACAAGCTTACCATCTTCTGGACTTGCATCCATTCCAGATGTTAGTGCCCACACTCCACAGATGGGACTCCCTAAGACAACATTTCAAAGCAGTCTTCCCATGTATCAACCTCTTGGAAGTCTAGGATCTTGGGGTTCCTCAGCCCCTCCAACTACAAATGGCAGTGGATTTCCCATGACAATGTATTGGCAAGGATTCTCTGGGCCCTCAAATGGATTTCAACATCAACAGCAATCTTTGCTGATGCCCTCACCCGGCTTGTCAATGCCACCTTCTATACAACAACCAATGCTATATCCTACCATTAATGCATCATTGTCTGCTGGATCTTCTGGTCCTTCAACCTCTAAACCATCAGAATCACCCTCTGCTTTCTTGCCACCCTTTGGTATGGGCACTCCAAACTTGCATTCGCATATGCTTCCTGCCCAGTTGCCTGCCCTTACTATAGGCACTCCGGGGGATTTGCAATCTTTTATGTTTCCTTCCAAGTCTTCTGCAACAGTTTCAGAGTCATCCTCAAGTTTGATTCTTAATAAGGCTTCTCCTCAAACTCTTCATACTGCTACATCAATTTCTAGTTTGCCCTTGGTTTCACCACTGACTCCTGCTTTGGACAAAACTAACATCCTATTACCAGCCTCTGACAAGCCTAAAACAGGCCCTACTGCTGTAATGCCGCTAACATCTGAATCTGTCTCGTCCATGGCTAGGACATCAGGTTCAATTTTAGCTGAGGGAGCAATGCCTCCATTGGTAACCCCAGGCCAGTTTTTTCAGCCTGAGCTCACCATGGTATCTTCATCCCAGCCTTCACAAACAGCTCAGAGGGATGTTGAGGTAGTCAAGGTATCATCATCAGAACTACCACCATCACCACCAGCAGCAGTAAAGGATTCCCAGGAACCAATATTGCCTCTGCCTACACAATCCATTCCTAAGCTGCATGGAGCTCATGAGTTTGCTCATCAAAGTTACAGAGGAGGTCGTGAAAGAGGAGGTCATGCCTTCACTCATCAAAGTTATAGAGGAGGACGTGAAAGAGGAGGCCATGCCTTCACTCATCAAAGTTATAGAGGAGGACGTGAAAGAGGAGGCCATGCCTTCACTCATCAAAGTTATAGAGGAGGACGTGAAAGAGGAGGTCATGCCTTCATTCATCAGAGTAATAGAGGAAGTGAAAGAGGTAGAGGAAACAGGATATCACGTCCTGTGACTAGATTCACCGAGGATTTTGATTTCACTGCAATGAATGAGAAATTCAACAAGGATGAAGTATGGGGTGATCTCGGAAGAAGTAATAAAGCGCTAGAAGATGGAGGTGAATCACAAGATGAAGAGGATGTCGGAGCTTTTCCATGTGATGATACTAAGAATGTTTATGTTAAGGATGACTTCTTTGATTCTCTGTCCTGTGATGCACTTGATCGTGGGTCACATAATGGGAGGCCCAAGTTCTCGGAACAAATGAAAAAGGATACCGAGACATTTGGCTATTCTCCAAGGCATCGGGGTGGAAGAGGTGGGCGATGGAATGGTCGAGGTGGGCGATGGAATGGTGGTTATCATGGAAGCGGTTATGGCTATGCCGGACAGGGCCGAGGACATAACTTTCCTAATCGTGCCAGCTACTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000003 GO:0000902 GO:0000904 GO:0001655 GO:0001822 GO:0001889 GO:0001894 GO:0001895 GO:0001947 GO:0002009 GO:0003006 GO:0003007 GO:0003143 GO:0003205 GO:0003230 GO:0003279 GO:0003283 GO:0003341 GO:0003351 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005886 GO:0005929 GO:0006928 GO:0006996 GO:0007017 GO:0007018 GO:0007275 GO:0007368 GO:0007369 GO:0007389 GO:0007507 GO:0008150 GO:0009653 GO:0009790 GO:0009799 GO:0009826 GO:0009855 GO:0009856 GO:0009860 GO:0009887 GO:0009888 GO:0009932 GO:0009966 GO:0009968 GO:0009987 GO:0010646 GO:0010648 GO:0016020 GO:0016043 GO:0016049 GO:0022414 GO:0022603 GO:0022607 GO:0023051 GO:0023057 GO:0030030 GO:0030031 GO:0030111 GO:0030154 GO:0030178 GO:0030323 GO:0030324 GO:0031016 GO:0031347 GO:0032501 GO:0032502 GO:0032989 GO:0035050 GO:0035239 GO:0035295 GO:0035469 GO:0040007 GO:0042592 GO:0042995 GO:0043226 GO:0044085 GO:0044424 GO:0044444 GO:0044464 GO:0044706 GO:0044782 GO:0045494 GO:0045595 GO:0045596 GO:0045995 GO:0048468 GO:0048496 GO:0048513 GO:0048519 GO:0048523 GO:0048562 GO:0048565 GO:0048568 GO:0048583 GO:0048585 GO:0048588 GO:0048589 GO:0048598 GO:0048729 GO:0048731 GO:0048732 GO:0048856 GO:0048868 GO:0048869 GO:0048871 GO:0050789 GO:0050793 GO:0050794 GO:0051093 GO:0051239 GO:0051704 GO:0051960 GO:0055123 GO:0060026 GO:0060027 GO:0060249 GO:0060271 GO:0060287 GO:0060429 GO:0060541 GO:0060560 GO:0060562 GO:0060828 GO:0060993 GO:0061008 GO:0061371 GO:0065007 GO:0065008 GO:0070925 GO:0071840 GO:0071907 GO:0071908 GO:0071909 GO:0071910 GO:0071944 GO:0072001 GO:0072189 GO:0072359 GO:0080134 GO:0090090 GO:0090175 GO:0090178 GO:0120025 GO:0120031 GO:0120036 GO:1905276 GO:1905330 GO:2000026 GO:2000027 GO:2000050 GO:2000095 GO:2000167
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
TPR_10 TPR_12 TPR_7 TPR_8

Protein Analysis

667

Amino Acids

71.54

Weight (kDa)

8.58

Isoelectric Point (pI)

60.4

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
SM-ATX PF14438 21 - 94 8.4e-11 Ataxin 2 SM domain
LSM14 PF12701 22 - 95 2.9e-32 Scd6-like Sm domain
FDF PF09532 531 - 621 2.6e-19 FDF domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0010792)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G27960 AT3G27960 AT3G27960
fragaria_vesca FvH4_6g50730
malus_domestica MD09G1033100.v1.1 MD17G1034400.v1.1
prunus_persica Prupe.3G285200_v2.0.a1 Prupe.3G285200_v2.0.a1
pyrus_communis pycom111g02640 pycom17g03180
rosa_chinensis RchiOBHm_Chr2g0171671
rosa_laevigata RLG00000022027
rosa_multiflora Rmu_ssc0000252.1_g000009
rosa_roxburghii Rroxscaffold_2G00080540
rosa_rugosa Rorug02G0555200
rosa_samantha Rh2AG630200 Rh2BG640700 Rh2BG643200 Rh2CG609000
rosa_wichuraiana Rw2G052150

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 265
AccB7I CCANNNNNTGG 2 cut(s) 386, 755
AccI GTMKAC 1 cut(s) 368
AciI CCGC 3 cut(s) 6, 1049, 1944
AclWI GGATC 4 cut(s) 276, 317, 502, 703
AcoI YGGCCR 1 cut(s) 3
AcsI RAATTY 2 cut(s) 102, 1628
AcuI CTGAAG 1 cut(s) 204
AfaI GTAC 1 cut(s) 315
AfeI AGCGCT 1 cut(s) 1677
AfiI CCNNNNNNNGG 7 cut(s) 386, 431, 581, 623, 755, 1028, 1080
AgsI TTSAA 7 cut(s) 127, 299, 455, 590, 711, 1095, 1633
AjiI CACGTC 4 cut(s) 1406, 1454, 1502, 1577
AjnI CCWGG 2 cut(s) 1132, 1269
AjuI GAANNNNNNNTTGG 2 cut(s) 763, 795
AloI GAACNNNNNNTCC 2 cut(s) 1075, 1107
AluBI AGCT 9 cut(s) 23, 375, 1103, 1156, 1193, 1312, 1322, 1721, 1998
AluI AGCT 9 cut(s) 23, 375, 1103, 1156, 1193, 1312, 1322, 1721, 1998
Alw21I GWGCWC 2 cut(s) 1158, 1324
Alw26I GTCTC 3 cut(s) 294, 1072, 1847
AlwI GGATC 4 cut(s) 276, 317, 502, 703
AlwNI CAGNNNCTG 2 cut(s) 362, 1013
Aor51HI AGCGCT 1 cut(s) 1677
AoxI GGCC 9 cut(s) 3, 50, 572, 1030, 1135, 1417, 1465, 1817, 1966
ApaI GGGCCC 1 cut(s) 576
ApeKI GCWGC 4 cut(s) 8, 72, 1253, 1312
ApoI RAATTY 2 cut(s) 102, 1628
ArsI GACNNNNNNTTYG 2 cut(s) 964, 996
AseI ATTAAT 1 cut(s) 675
AspLEI GCGC 2 cut(s) 192, 1678
AspS9I GGNCC 8 cut(s) 50, 203, 572, 573, 704, 1031, 1818, 1966
AsuC2I CCSGG 2 cut(s) 624, 828
AsuHPI GGTGA 9 cut(s) 79, 612, 723, 957, 1150, 1236, 1585, 1664, 1703
AvaII GGWCC 2 cut(s) 203, 704
BaeGI GKGCMC 3 cut(s) 418, 576, 767
BaeI ACNNNNGTAYC 2 cut(s) 1149, 1182
BanII GRGCYC 3 cut(s) 576, 1158, 1324
BbsI GAAGAC 2 cut(s) 455, 855
Bbv12I GWGCWC 2 cut(s) 1158, 1324
BbvCI CCTCAGC 2 cut(s) 508, 1104
BbvI GCAGC 4 cut(s) 20, 84, 1265, 1299
BccI CCATC 9 cut(s) 37, 194, 388, 424, 730, 1249, 1679, 1893, 1914
BcgI CGANNNNNNTGC 2 cut(s) 308, 342
BciT130I CCWGG 2 cut(s) 1134, 1271
BciVI GTATCC 1 cut(s) 1840
BclI TGATCA 1 cut(s) 78
BcnI CCSGG 2 cut(s) 624, 828
BcoDI GTCTC 3 cut(s) 294, 1072, 1847
BfaI CTAG 5 cut(s) 491, 948, 1080, 1587, 1679
BfmI CTRYAG 3 cut(s) 54, 272, 816
BfoI RGCGCY 1 cut(s) 1679
BfuAI ACCTGC 1 cut(s) 265
BfuI GTATCC 1 cut(s) 1840
BglII AGATCT 1 cut(s) 35
BisI GCNGC 6 cut(s) 6, 9, 73, 1049, 1254, 1313
BlpI GCTNAGC 1 cut(s) 24
BlsI GCNGC 6 cut(s) 7, 10, 74, 1050, 1255, 1314
Bme1390I CCNGG 4 cut(s) 624, 828, 1134, 1271
Bme18I GGWCC 2 cut(s) 203, 704
BmgBI CACGTC 4 cut(s) 1406, 1454, 1502, 1577
BmgT120I GGNCC 8 cut(s) 50, 203, 572, 573, 704, 1031, 1818, 1966
BmiI GGNNCC 3 cut(s) 505, 574, 1275
BmrFI CCNGG 4 cut(s) 624, 828, 1134, 1271
BmrI ACTGGG 1 cut(s) 793
BmsI GCATC 6 cut(s) 159, 404, 603, 689, 1777, 1885
BmuI ACTGGG 1 cut(s) 793
BpiI GAAGAC 2 cut(s) 455, 855
BplI GAGNNNNNCTC 2 cut(s) 872, 904
Bpu10I CCTNAGC 4 cut(s) 508, 1104, 1152, 1308
Bpu1102I GCTNAGC 1 cut(s) 24
BpuEI CTTGAG 3 cut(s) 178, 336, 874
BpuMI CCSGG 2 cut(s) 624, 828
BsaBI GATNNNNATC 1 cut(s) 40
BsaWI WCCGGW 1 cut(s) 292
Bsc4I CCNNNNNNNGG 7 cut(s) 386, 431, 581, 623, 755, 1028, 1080
Bse1I ACTGG 2 cut(s) 799, 1138
Bse3DI GCAATG 2 cut(s) 1119, 1623
Bse8I GATNNNNATC 1 cut(s) 40
BseBI CCWGG 2 cut(s) 1134, 1271
BseJI GATNNNNATC 1 cut(s) 40
BseLI CCNNNNNNNGG 7 cut(s) 386, 431, 581, 623, 755, 1028, 1080
BseMI GCAATG 2 cut(s) 1119, 1623
BseMII CTCAG 5 cut(s) 38, 522, 1095, 1143, 1208
BseNI ACTGG 2 cut(s) 799, 1138
BseRI GAGGAG 9 cut(s) 906, 1365, 1380, 1413, 1428, 1461, 1476, 1509, 1524
BseSI GKGCMC 3 cut(s) 418, 576, 767
BseXI GCAGC 4 cut(s) 20, 84, 1265, 1299
BseYI CCCAGC 1 cut(s) 1176
BshFI GGCC 9 cut(s) 5, 52, 574, 1032, 1137, 1419, 1467, 1819, 1968
BsiHKAI GWGCWC 2 cut(s) 1158, 1324
BsiSI CCGG 4 cut(s) 293, 624, 827, 1959
BslFI GGGAC 2 cut(s) 193, 447
BslI CCNNNNNNNGG 7 cut(s) 386, 431, 581, 623, 755, 1028, 1080
BsmAI GTCTC 3 cut(s) 294, 1072, 1847
BsmBI CGTCTC 1 cut(s) 294
BsmFI GGGAC 2 cut(s) 193, 447
BsmI GAATGC 1 cut(s) 778
BsnI GGCC 9 cut(s) 5, 52, 574, 1032, 1137, 1419, 1467, 1819, 1968
Bsp120I GGGCCC 1 cut(s) 572
Bsp1286I GDGCHC 5 cut(s) 418, 576, 767, 1158, 1324
Bsp1407I TGTACA 1 cut(s) 313
Bsp143I GATC 9 cut(s) 35, 78, 170, 268, 322, 494, 695, 1654, 1795
Bsp1720I GCTNAGC 1 cut(s) 24
Bsp19I CCATGG 2 cut(s) 1074, 1161
BspACI CCGC 3 cut(s) 6, 1049, 1944
BspANI GGCC 9 cut(s) 5, 52, 574, 1032, 1137, 1419, 1467, 1819, 1968
BspCNI CTCAG 5 cut(s) 37, 521, 1096, 1144, 1207
BspHI TCATGA 1 cut(s) 1324
BspLI GGNNCC 3 cut(s) 505, 574, 1275
BspMAI CTGCAG 2 cut(s) 58, 276
BspMI ACCTGC 1 cut(s) 265
BspPI GGATC 4 cut(s) 276, 317, 502, 703
BsrDI GCAATG 2 cut(s) 1119, 1623
BsrGI TGTACA 1 cut(s) 313
BsrI ACTGG 2 cut(s) 799, 1138
BssMI GATC 9 cut(s) 35, 78, 170, 268, 322, 494, 695, 1654, 1795
BssT1I CCWWGG 4 cut(s) 957, 1074, 1161, 1871
Bst2UI CCWGG 2 cut(s) 1134, 1271
Bst4CI ACNGT 2 cut(s) 16, 874
Bst6I CTCTTC 4 cut(s) 128, 930, 1701, 1882
BstAPI GCANNNNNTGC 2 cut(s) 362, 607
BstAUI TGTACA 1 cut(s) 313
BstC8I GCNNGC 3 cut(s) 54, 807, 1996
BstDEI CTNAG 8 cut(s) 24, 441, 508, 1104, 1152, 1194, 1308, 1740
BstDSI CCRYGG 2 cut(s) 1074, 1161
BstEII GGTNACC 1 cut(s) 1126
BstENI CCTNNNNNAGG 1 cut(s) 1026
BstH2I RGCGCY 1 cut(s) 1679
BstHHI GCGC 2 cut(s) 192, 1678
BstKTI GATC 9 cut(s) 38, 81, 173, 271, 325, 497, 698, 1657, 1798
BstMAI GTCTC 3 cut(s) 294, 1072, 1847
BstMBI GATC 9 cut(s) 35, 78, 170, 268, 322, 494, 695, 1654, 1795
BstMWI GCNNNNNNNGC 5 cut(s) 81, 362, 607, 1109, 1950
BstNI CCWGG 2 cut(s) 1134, 1271
BstPI GGTNACC 1 cut(s) 1126
BstSCI CCNGG 4 cut(s) 622, 826, 1132, 1269
BstSFI CTRYAG 3 cut(s) 54, 272, 816
BstSLI GKGCMC 3 cut(s) 418, 576, 767
BstV1I GCAGC 4 cut(s) 20, 84, 1265, 1299
BstV2I GAAGAC 2 cut(s) 455, 855
BstX2I RGATCY 4 cut(s) 35, 268, 494, 695
BstYI RGATCY 4 cut(s) 35, 268, 494, 695
BsuI GTATCC 1 cut(s) 1840
BsuRI GGCC 9 cut(s) 5, 52, 574, 1032, 1137, 1419, 1467, 1819, 1968
BtgI CCRYGG 2 cut(s) 1074, 1161
BtgZI GCGATG 2 cut(s) 1912, 1933
BtrI CACGTC 4 cut(s) 1406, 1454, 1502, 1577
BtsI GCAGTG 3 cut(s) 363, 538, 1611
BtsIMutI CAGTG 4 cut(s) 363, 538, 968, 1611
BveI ACCTGC 1 cut(s) 265
Cac8I GCNNGC 3 cut(s) 54, 807, 1996
CaiI CAGNNNCTG 2 cut(s) 362, 1013
CciI TCATGA 1 cut(s) 1324
CfoI GCGC 2 cut(s) 192, 1678
Cfr13I GGNCC 8 cut(s) 50, 203, 572, 573, 704, 1031, 1818, 1966
CseI GACGC 1 cut(s) 354
Csp6I GTAC 1 cut(s) 314
CviQI GTAC 1 cut(s) 314
DdeI CTNAG 8 cut(s) 24, 441, 508, 1104, 1152, 1194, 1308, 1740
DpnI GATC 9 cut(s) 37, 80, 172, 270, 324, 496, 697, 1656, 1797
DpnII GATC 9 cut(s) 35, 78, 170, 268, 322, 494, 695, 1654, 1795
EaeI YGGCCR 1 cut(s) 3
Eam1104I CTCTTC 4 cut(s) 128, 930, 1701, 1882
EarI CTCTTC 4 cut(s) 128, 930, 1701, 1882
Ecl136II GAGCTC 2 cut(s) 1156, 1322
Eco130I CCWWGG 4 cut(s) 957, 1074, 1161, 1871
Eco24I GRGCYC 3 cut(s) 576, 1158, 1324
Eco32I GATATC 1 cut(s) 1572
Eco47I GGWCC 2 cut(s) 203, 704
Eco47III AGCGCT 1 cut(s) 1677
Eco53kI GAGCTC 2 cut(s) 1156, 1322
Eco57I CTGAAG 1 cut(s) 204
Eco91I GGTNACC 1 cut(s) 1126
EcoICRI GAGCTC 2 cut(s) 1156, 1322
EcoNI CCTNNNNNAGG 1 cut(s) 1026
EcoO109I RGGNCCY 2 cut(s) 573, 1031
EcoO65I GGTNACC 1 cut(s) 1126
EcoRII CCWGG 2 cut(s) 1132, 1269
EcoRV GATATC 1 cut(s) 1572
EcoT14I CCWWGG 4 cut(s) 957, 1074, 1161, 1871
EcoT22I ATGCAT 1 cut(s) 682
EcoT38I GRGCYC 3 cut(s) 576, 1158, 1324
ErhI CCWWGG 4 cut(s) 957, 1074, 1161, 1871
Esp3I CGTCTC 1 cut(s) 294
FalI AAGNNNNNCTT 2 cut(s) 1748, 1780
FaqI GGGAC 2 cut(s) 193, 447
FauNDI CATATG 1 cut(s) 786
FbaI TGATCA 1 cut(s) 78
FblI GTMKAC 1 cut(s) 368
Fnu4HI GCNGC 6 cut(s) 6, 9, 73, 1049, 1254, 1313
FriOI GRGCYC 3 cut(s) 576, 1158, 1324
Fsp4HI GCNGC 6 cut(s) 6, 9, 73, 1049, 1254, 1313
FspBI CTAG 5 cut(s) 491, 948, 1080, 1587, 1679
GlaI GCGC 2 cut(s) 191, 1677
GluI GCNGC 6 cut(s) 6, 9, 73, 1049, 1254, 1313
GsaI CCCAGC 1 cut(s) 1180
HaeII RGCGCY 1 cut(s) 1679
HaeIII GGCC 9 cut(s) 5, 52, 574, 1032, 1137, 1419, 1467, 1819, 1968
HapII CCGG 4 cut(s) 293, 624, 827, 1959
HgaI GACGC 1 cut(s) 354
HhaI GCGC 2 cut(s) 192, 1678
Hin6I GCGC 2 cut(s) 190, 1676
HinP1I GCGC 2 cut(s) 190, 1676
HincII GTYRAC 1 cut(s) 369
HindII GTYRAC 1 cut(s) 369
HindIII AAGCTT 1 cut(s) 373
HpaII CCGG 4 cut(s) 293, 624, 827, 1959
HphI GGTGA 9 cut(s) 79, 612, 723, 957, 1150, 1236, 1585, 1664, 1703
Hpy166II GTNNAC 3 cut(s) 206, 316, 369
Hpy188III TCNNGA 5 cut(s) 33, 387, 404, 1325, 1358
Hpy8I GTNNAC 3 cut(s) 206, 316, 369
Hpy99I CGWCG 1 cut(s) 370
HpyAV CCTTC 9 cut(s) 179, 651, 717, 864, 1191, 1387, 1435, 1483, 1531
HpyCH4III ACNGT 2 cut(s) 16, 874
HpyCH4IV ACGT 4 cut(s) 1405, 1453, 1501, 1576
HpyF10VI GCNNNNNNNGC 5 cut(s) 81, 362, 607, 1109, 1950
HpyF3I CTNAG 8 cut(s) 24, 441, 508, 1104, 1152, 1194, 1308, 1740
HpySE526I ACGT 4 cut(s) 1405, 1453, 1501, 1576
HspAI GCGC 2 cut(s) 190, 1676
Ksp22I TGATCA 1 cut(s) 78
Kzo9I GATC 9 cut(s) 35, 78, 170, 268, 322, 494, 695, 1654, 1795
LmnI GCTCC 3 cut(s) 1109, 1319, 1718
Lsp1109I GCAGC 4 cut(s) 20, 84, 1265, 1299
LweI GCATC 6 cut(s) 159, 404, 603, 689, 1777, 1885
MaeI CTAG 5 cut(s) 491, 948, 1080, 1587, 1679
MaeII ACGT 4 cut(s) 1405, 1453, 1501, 1576
MaeIII GTNAC 6 cut(s) 257, 358, 1126, 1343, 1582, 1803
MalI GATC 9 cut(s) 37, 80, 172, 270, 324, 496, 697, 1656, 1797
MboI GATC 9 cut(s) 35, 78, 170, 268, 322, 494, 695, 1654, 1795
MflI RGATCY 4 cut(s) 35, 268, 494, 695
MhlI GDGCHC 5 cut(s) 418, 576, 767, 1158, 1324
MluCI AATT 4 cut(s) 102, 942, 1095, 1628
MlyI GAGTC 5 cut(s) 152, 334, 429, 890, 967
MmeI TCCRAC 2 cut(s) 542, 1696
Mph1103I ATGCAT 1 cut(s) 682
MseI TTAA 3 cut(s) 675, 903, 1755
MslI CAYNNNNRTG 3 cut(s) 548, 1616, 1881
MspI CCGG 4 cut(s) 293, 624, 827, 1959
MspR9I CCNGG 4 cut(s) 624, 828, 1134, 1271
Mva1269I GAATGC 1 cut(s) 778
MvaI CCWGG 2 cut(s) 1134, 1271
MwoI GCNNNNNNNGC 5 cut(s) 81, 362, 607, 1109, 1950
NciI CCSGG 2 cut(s) 624, 828
NcoI CCATGG 2 cut(s) 1074, 1161
NdeI CATATG 1 cut(s) 786
NdeII GATC 9 cut(s) 35, 78, 170, 268, 322, 494, 695, 1654, 1795
NlaIV GGNNCC 3 cut(s) 505, 574, 1275
NmeAIII GCCGAG 1 cut(s) 1994
NmuCI GTSAC 4 cut(s) 257, 358, 1582, 1803
NsiI ATGCAT 1 cut(s) 682
PagI TCATGA 1 cut(s) 1324
PcsI WCGNNNNNNNCGW 1 cut(s) 1915
PctI GAATGC 1 cut(s) 778
PfeI GAWTC 9 cut(s) 59, 564, 728, 898, 1061, 1265, 1590, 1694, 1772
PflFI GACNNNGTC 1 cut(s) 364
PflMI CCANNNNNTGG 2 cut(s) 386, 755
PkrI GCNGC 6 cut(s) 7, 10, 74, 1050, 1255, 1314
PleI GAGTC 5 cut(s) 151, 334, 429, 889, 967
PpsI GAGTC 5 cut(s) 151, 334, 429, 889, 967
PshBI ATTAAT 1 cut(s) 675
Psp124BI GAGCTC 2 cut(s) 1158, 1324
Psp6I CCWGG 2 cut(s) 1132, 1269
PspEI GGTNACC 1 cut(s) 1126
PspFI CCCAGC 1 cut(s) 1176
PspGI CCWGG 2 cut(s) 1132, 1269
PspN4I GGNNCC 3 cut(s) 505, 574, 1275
PspOMI GGGCCC 1 cut(s) 572
PspPI GGNCC 8 cut(s) 50, 203, 572, 573, 704, 1031, 1818, 1966
PstI CTGCAG 2 cut(s) 58, 276
PstNI CAGNNNCTG 2 cut(s) 362, 1013
PsuI RGATCY 4 cut(s) 35, 268, 494, 695
PsyI GACNNNGTC 1 cut(s) 364
RsaI GTAC 1 cut(s) 315
RsaNI GTAC 1 cut(s) 314
RseI CAYNNNNRTG 3 cut(s) 548, 1616, 1881
SacI GAGCTC 2 cut(s) 1158, 1324
SalI GTCGAC 1 cut(s) 367
SaqAI TTAA 3 cut(s) 675, 903, 1755
SatI GCNGC 6 cut(s) 6, 9, 73, 1049, 1254, 1313
Sau3AI GATC 9 cut(s) 35, 78, 170, 268, 322, 494, 695, 1654, 1795
Sau96I GGNCC 8 cut(s) 50, 203, 572, 573, 704, 1031, 1818, 1966
SchI GAGTC 5 cut(s) 152, 334, 429, 890, 967
ScrFI CCNGG 4 cut(s) 624, 828, 1134, 1271
SduI GDGCHC 5 cut(s) 418, 576, 767, 1158, 1324
SfaNI GCATC 6 cut(s) 159, 404, 603, 689, 1777, 1885
SfcI CTRYAG 3 cut(s) 54, 272, 816
SinI GGWCC 2 cut(s) 203, 704
SmiMI CAYNNNNRTG 3 cut(s) 548, 1616, 1881
SmlI CTYRAG 3 cut(s) 157, 351, 889
SmoI CTYRAG 3 cut(s) 157, 351, 889
Sse9I AATT 4 cut(s) 102, 942, 1095, 1628
SsiI CCGC 3 cut(s) 6, 1049, 1944
SspI AATATT 1 cut(s) 1281
SspMI CTAG 5 cut(s) 491, 948, 1080, 1587, 1679
SstI GAGCTC 2 cut(s) 1158, 1324
StyD4I CCNGG 4 cut(s) 622, 826, 1132, 1269
StyI CCWWGG 4 cut(s) 957, 1074, 1161, 1871
TaaI ACNGT 2 cut(s) 16, 874
TaiI ACGT 4 cut(s) 1408, 1456, 1504, 1579
TaqI TCGA 2 cut(s) 368, 1909
TasI AATT 4 cut(s) 102, 942, 1095, 1628
TatI WGTACW 1 cut(s) 313
TauI GCSGC 2 cut(s) 8, 1051
TfiI GAWTC 9 cut(s) 59, 564, 728, 898, 1061, 1265, 1590, 1694, 1772
Tru1I TTAA 3 cut(s) 675, 903, 1755
Tru9I TTAA 3 cut(s) 675, 903, 1755
TscAI CASTG 4 cut(s) 363, 538, 975, 1618
TseFI GTSAC 4 cut(s) 257, 358, 1582, 1803
TseI GCWGC 4 cut(s) 8, 72, 1253, 1312
Tsp45I GTSAC 4 cut(s) 257, 358, 1582, 1803
TspDTI ATGAA 9 cut(s) 30, 917, 1161, 1513, 1517, 1634, 1656, 1719, 1853
TspRI CASTG 4 cut(s) 363, 538, 975, 1618
Tth111I GACNNNGTC 1 cut(s) 364
Van91I CCANNNNNTGG 2 cut(s) 386, 755
VpaK11BI GGWCC 2 cut(s) 203, 704
VspI ATTAAT 1 cut(s) 675
XagI CCTNNNNNAGG 1 cut(s) 1026
XapI RAATTY 2 cut(s) 102, 1628
XmiI GTMKAC 1 cut(s) 368
XspI CTAG 5 cut(s) 491, 948, 1080, 1587, 1679
Zsp2I ATGCAT 1 cut(s) 682
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.