Rh2CG609000

Tetratricopeptide repeat

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2C
OG0010792
Physical Location & Seq
Forward (+)
78463865 .. 78466134
2270 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2CG609000.1

Sequence Viewer

Length: 2127 bp
ATGCCTGGATTAGCTATGGATGAAGTGAATGTGAATGGGGTAGTAGATGAGCAGAGTGGAGAGTATACACCTCACAAGGAAGGCTATAACCAGCAAGGCTCTCCGAGAAGTCCATTGAGCCCTCAAAGTCCTCATAGTGACTCCATTGGTATGCCTATGGATGGCCGGATTGACACCTCGATTGAGCAGCTGTATCACAATGTATGTGAAATGCAGAGCTCTGATCAATCTCCATCCAGGGCTAGTTTTGGATCATTTGGTGCTGAGTCGAGGATTGATTCAGAGTTGAATCATCTTGTTGGGTATGTCCATCCAGATGTGGAGGTAAGGAAAGAGGTTGTTGTGGAAACCAGAGAGGATGGTACCTCAACTCCTGAAAAAGAAAATGTGTCTGTGGGAACAAAGGTGAAGATTCAATCTCCTAGGTTCAGTCCTAGGAGCAAATCTCCCAATCAGAGGCCTCCCCTTGACAAGAGGAGTCCAAGAAATGCAAGTTCAGTGATGTCGAAGAACAAGCTGAGAAGTTTAGCTTTACGAGGGATGAAGCTTCAGAATGGAGTCGAGGATCCCTCTGTGGAGGGATTGGATAGCCCTGATCTTGGACCCTTCTTGCTTAAGCAAGCAAGGGATATGATTTCTGCTGGTGAAAGTCCCCGGAAGGCACTTGAGTTGGCTCGTCGGGCAGTGAAATCATTTGAGAAATGTACAACCGAGAAACCCAGTTTAGAGTTGGTCATGTGTTTGCATGTTTTGGCATCAATACATTGCAGCTTAGGCCAGTACAATGAGGCAATTCCAGTTCTTGAGCGCGCCATTGATATTCCAGCTATAGAGGATGGCCATGACCACGCACTAGCCAAGTTTGCAGGGTGCATGCAATTGGGTGACATTTATGCAATGACCGGTCAGATTGAGAATTCAATACTGTTCTACACAGCAGGTATGGAGATACAAAGGCAAGTCTTGGGAGAAACAGACCCTCGATTTGGTGAGACATGTCGATATGTAGCTGAGGCTCATGTCCAAGCATTGCAGTTTGATGAGGCTGAGAAGCTGTGTCTAATGGCCCTTGAAATCCACAGAGAGAATGGGTCTCCTGCTTCACTAGAGGAAGCGGCAGATAGAAGACTCATGGGACTTATCTGTGACTCAAAAGGAGATTATGAAGCTGCTCTTGAGCATTATGTTTTAGCAGGCATGTCCATGTCTGCCAATGGCCACGAAACAGATGCAGCTTCAATTGATTGCAGTATTGGAGATGCTTATCTGGCCTTGGCTAGGTATGATGAGGCAGTCTTTGCTTTCCAGAAAGCACTGACTGTGTTTAAGACCACTAAAGGAGAGACACATCCAGCAGTAGCTTCTGTTTATGTCCGGTTAGCTGATCTTTACAACAAGATAGGGAAGTTTAAGGAGTCCAAGTCGTACTGTGAAAATGCACATAAGATCTACGGGAAGCCAAATCCCGGAACCCCTGCAGAAGAGATTGCTAGCGGTCTTATTGATGTTTCTGCTATCTATCAATCTATGAATGATTTGGAGCAGGCCCTCAAGTTACTCAAGAAGGCTTTGAAGATGTTTGGTGATTCCCCAGGTCAACAAAGTACAATTGCAGGAATTGAGGCTCAGATGGGGGTCATGTATTATATGATGGGAAATTATTCAGACTCCTACAACACCTTCAAGAGTTCCACAACCAAGTTCAGGGCCAGTGGAGAGAAAAAATCAGCCTTGTTTGGGATTGCTCTGAACCAAATGGGTCTAGCCTGTGTGCAGTGCTATTCAATAAACGAGGCTGCAGACCTGTTTGAAGAAGCCAGGAATATCTTAGAGAAGGAATACGGGCCATATCACCCTGATACATTGGGCGTGTATAGTAATTTGGCTGGCACATACGATGCAATGGGCAGGTTGGATGATGCCATTGAAATTTTGGAATATGTTGTTGGGATGAGGGAAGAGAAGCTTGGAACGGCAAATCCTGATGTGGCCGATGAGAAGCGGAGGTTGGCTGTGTTGTTGAAAGAAGCAGGCAGGGTGAGGAACAGGAAACCAAGATCACTAGAGACACTTCTCGACACTGCCAACCCCCAAATTAGAAGAAGTGACATTATTGAGGTACTGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000003 GO:0000902 GO:0000904 GO:0001655 GO:0001822 GO:0001889 GO:0001894 GO:0001895 GO:0001947 GO:0002009 GO:0003006 GO:0003007 GO:0003143 GO:0003205 GO:0003230 GO:0003279 GO:0003283 GO:0003341 GO:0003351 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005886 GO:0005929 GO:0006928 GO:0006996 GO:0007017 GO:0007018 GO:0007275 GO:0007368 GO:0007369 GO:0007389 GO:0007507 GO:0008150 GO:0009653 GO:0009790 GO:0009799 GO:0009826 GO:0009855 GO:0009856 GO:0009860 GO:0009887 GO:0009888 GO:0009932 GO:0009966 GO:0009968 GO:0009987 GO:0010646 GO:0010648 GO:0016020 GO:0016043 GO:0016049 GO:0022414 GO:0022603 GO:0022607 GO:0023051 GO:0023057 GO:0030030 GO:0030031 GO:0030111 GO:0030154 GO:0030178 GO:0030323 GO:0030324 GO:0031016 GO:0031347 GO:0032501 GO:0032502 GO:0032989 GO:0035050 GO:0035239 GO:0035295 GO:0035469 GO:0040007 GO:0042592 GO:0042995 GO:0043226 GO:0044085 GO:0044424 GO:0044444 GO:0044464 GO:0044706 GO:0044782 GO:0045494 GO:0045595 GO:0045596 GO:0045995 GO:0048468 GO:0048496 GO:0048513 GO:0048519 GO:0048523 GO:0048562 GO:0048565 GO:0048568 GO:0048583 GO:0048585 GO:0048588 GO:0048589 GO:0048598 GO:0048729 GO:0048731 GO:0048732 GO:0048856 GO:0048868 GO:0048869 GO:0048871 GO:0050789 GO:0050793 GO:0050794 GO:0051093 GO:0051239 GO:0051704 GO:0051960 GO:0055123 GO:0060026 GO:0060027 GO:0060249 GO:0060271 GO:0060287 GO:0060429 GO:0060541 GO:0060560 GO:0060562 GO:0060828 GO:0060993 GO:0061008 GO:0061371 GO:0065007 GO:0065008 GO:0070925 GO:0071840 GO:0071907 GO:0071908 GO:0071909 GO:0071910 GO:0071944 GO:0072001 GO:0072189 GO:0072359 GO:0080134 GO:0090090 GO:0090175 GO:0090178 GO:0120025 GO:0120031 GO:0120036 GO:1905276 GO:1905330 GO:2000026 GO:2000027 GO:2000050 GO:2000095 GO:2000167
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
TPR_10 TPR_12 TPR_7 TPR_8

Protein Analysis

708

Amino Acids

77.86

Weight (kDa)

5.29

Isoelectric Point (pI)

50.81

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
TPR_12 PF13424 336 - 395 2.7e-07 Tetratricopeptide repeat
TPR_MalT PF17874 378 - 524 2.4e-07 MalT-like TPR region
TPR_NPHP3 PF24885 409 - 531 1.6e-09 Nephrocystin-3 TPR domain
TPR_12 PF13424 411 - 473 4.3e-09 Tetratricopeptide repeat
TPR_12 PF13424 454 - 527 1.5e-09 Tetratricopeptide repeat
TPR_12 PF13424 582 - 651 8.9e-11 Tetratricopeptide repeat
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0010792)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G27960 AT3G27960 AT3G27960
fragaria_vesca FvH4_6g50730
malus_domestica MD09G1033100.v1.1 MD17G1034400.v1.1
prunus_persica Prupe.3G285200_v2.0.a1 Prupe.3G285200_v2.0.a1
pyrus_communis pycom111g02640 pycom17g03180
rosa_chinensis RchiOBHm_Chr2g0171671
rosa_laevigata RLG00000022027
rosa_multiflora Rmu_ssc0000252.1_g000009
rosa_roxburghii Rroxscaffold_2G00080540
rosa_rugosa Rorug02G0555200
rosa_samantha Rh2AG630200 Rh2BG640700 Rh2BG643200 Rh2CG609000
rosa_wichuraiana Rw2G052150

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 2 cut(s) 929, 1899
Acc65I GGTACC 1 cut(s) 362
AccB1I GGYRCC 1 cut(s) 362
AccI GTMKAC 1 cut(s) 65
AccII CGCG 1 cut(s) 810
AciI CCGC 3 cut(s) 1115, 1494, 2002
AclWI GGATC 3 cut(s) 259, 560, 573
AcoI YGGCCR 4 cut(s) 163, 838, 1216, 1989
AcsI RAATTY 2 cut(s) 916, 1929
AcuI CTGAAG 1 cut(s) 533
AfaI GTAC 6 cut(s) 364, 706, 782, 1427, 1606, 2121
AfiI CCNNNNNNNGG 8 cut(s) 161, 456, 599, 986, 1278, 1466, 1704, 1737
AflII CTTAAG 1 cut(s) 614
AflIII ACRYGT 1 cut(s) 995
AgeI ACCGGT 1 cut(s) 902
AjnI CCWGG 4 cut(s) 4, 236, 1591, 1817
AjuI GAANNNNNNNTTGG 6 cut(s) 1929, 1950, 1961, 1982, 1991, 2023
AloI GAACNNNNNNTCC 2 cut(s) 1963, 1995
Alw21I GWGCWC 1 cut(s) 221
Alw26I GTCTC 4 cut(s) 986, 1098, 1337, 2060
AlwI GGATC 3 cut(s) 259, 560, 573
ApeKI GCWGC 5 cut(s) 187, 768, 1169, 1232, 1796
ApoI RAATTY 2 cut(s) 916, 1929
ArsI GACNNNNNNTTYG 2 cut(s) 968, 1000
AsiGI ACCGGT 1 cut(s) 902
Asp700I GAANNNNTTC 1 cut(s) 1660
Asp718I GGTACC 1 cut(s) 362
AspA2I CCTAGG 2 cut(s) 422, 434
AspLEI GCGC 2 cut(s) 810, 812
AspS9I GGNCC 5 cut(s) 602, 1066, 1546, 1707, 1844
AsuC2I CCSGG 2 cut(s) 655, 1467
AsuHPI GGTGA 7 cut(s) 418, 656, 896, 1001, 1595, 1844, 2050
AsuNHI GCTAGC 1 cut(s) 1490
AvaII GGWCC 1 cut(s) 602
AvrII CCTAGG 2 cut(s) 422, 434
BalI TGGCCA 2 cut(s) 840, 1218
BamHI GGATCC 1 cut(s) 565
BanI GGYRCC 1 cut(s) 362
BanII GRGCYC 2 cut(s) 122, 221
BbsI GAAGAC 1 cut(s) 1132
Bbv12I GWGCWC 1 cut(s) 221
BbvCI CCTCAGC 1 cut(s) 1011
BbvI GCAGC 5 cut(s) 199, 780, 1156, 1244, 1783
BccI CCATC 7 cut(s) 155, 241, 318, 353, 830, 1624, 1645
BceAI ACGGC 1 cut(s) 1989
BcgI CGANNNNNNTGC 2 cut(s) 1211, 1245
BciT130I CCWGG 4 cut(s) 6, 238, 1593, 1819
BclI TGATCA 1 cut(s) 223
BcnI CCSGG 2 cut(s) 655, 1467
BcoDI GTCTC 4 cut(s) 986, 1098, 1337, 2060
BfaI CTAG 9 cut(s) 243, 423, 435, 854, 1106, 1278, 1491, 1763, 2063
BfmI CTRYAG 3 cut(s) 828, 1476, 1797
BfrI CTTAAG 1 cut(s) 614
BfuAI ACCTGC 2 cut(s) 929, 1899
BglII AGATCT 1 cut(s) 1446
BisI GCNGC 6 cut(s) 188, 769, 1116, 1170, 1233, 1797
BlnI CCTAGG 2 cut(s) 422, 434
BlsI GCNGC 6 cut(s) 189, 770, 1117, 1171, 1234, 1798
Bme1390I CCNGG 6 cut(s) 6, 238, 655, 1467, 1593, 1819
Bme18I GGWCC 1 cut(s) 602
BmgT120I GGNCC 5 cut(s) 602, 1066, 1546, 1707, 1844
BmiI GGNNCC 4 cut(s) 364, 567, 604, 1471
BmrFI CCNGG 6 cut(s) 6, 238, 655, 1467, 1593, 1819
BmrI ACTGGG 1 cut(s) 714
BmsI GCATC 5 cut(s) 764, 1219, 1249, 1888, 1909
BmtI GCTAGC 1 cut(s) 1494
BmuI ACTGGG 1 cut(s) 714
BpiI GAAGAC 1 cut(s) 1132
BplI GAGNNNNNCTC 4 cut(s) 430, 462, 554, 586
Bpu10I CCTNAGC 2 cut(s) 772, 1011
BpuEI CTTGAG 5 cut(s) 686, 824, 1196, 1535, 1544
BpuMI CCSGG 2 cut(s) 655, 1467
BsaBI GATNNNNATC 1 cut(s) 1263
BsaI GGTCTC 1 cut(s) 1098
BsaJI CCNNGG 6 cut(s) 237, 422, 434, 653, 1272, 1591
BsaWI WCCGGW 2 cut(s) 902, 1374
BsaXI ACNNNNNCTCC 4 cut(s) 355, 385, 1406, 1436
Bsc4I CCNNNNNNNGG 8 cut(s) 161, 456, 599, 986, 1278, 1466, 1704, 1737
Bse118I RCCGGY 1 cut(s) 902
Bse1I ACTGG 4 cut(s) 720, 778, 797, 1710
Bse3DI GCAATG 4 cut(s) 763, 903, 1028, 1908
Bse8I GATNNNNATC 1 cut(s) 1263
BseBI CCWGG 4 cut(s) 6, 238, 1593, 1819
BseDI CCNNGG 6 cut(s) 237, 422, 434, 653, 1272, 1591
BseJI GATNNNNATC 1 cut(s) 1263
BseLI CCNNNNNNNGG 8 cut(s) 161, 456, 599, 986, 1278, 1466, 1704, 1737
BseMI GCAATG 4 cut(s) 763, 903, 1028, 1908
BseMII CTCAG 5 cut(s) 255, 509, 1002, 1038, 1640
BseNI ACTGG 4 cut(s) 720, 778, 797, 1710
BsePI GCGCGC 1 cut(s) 808
BseRI GAGGAG 1 cut(s) 490
BseXI GCAGC 5 cut(s) 199, 780, 1156, 1244, 1783
BsgI GTGCAG 1 cut(s) 1793
Bsh1236I CGCG 1 cut(s) 810
BshNI GGYRCC 1 cut(s) 362
BshTI ACCGGT 1 cut(s) 902
BsiHKAI GWGCWC 1 cut(s) 221
BsiSI CCGG 5 cut(s) 166, 655, 903, 1375, 1467
BslFI GGGAC 2 cut(s) 636, 1149
BslI CCNNNNNNNGG 8 cut(s) 161, 456, 599, 986, 1278, 1466, 1704, 1737
BsmAI GTCTC 4 cut(s) 986, 1098, 1337, 2060
BsmFI GGGAC 2 cut(s) 636, 1149
Bso31I GGTCTC 1 cut(s) 1098
Bsp1286I GDGCHC 2 cut(s) 122, 221
Bsp1407I TGTACA 1 cut(s) 704
Bsp143I GATC 7 cut(s) 223, 251, 565, 595, 1384, 1446, 2057
BspACI CCGC 3 cut(s) 1115, 1494, 2002
BspCNI CTCAG 5 cut(s) 256, 510, 1003, 1039, 1639
BspFNI CGCG 1 cut(s) 810
BspLI GGNNCC 4 cut(s) 364, 567, 604, 1471
BspMAI CTGCAG 2 cut(s) 1480, 1801
BspMI ACCTGC 2 cut(s) 929, 1899
BspOI GCTAGC 1 cut(s) 1494
BspPI GGATC 3 cut(s) 259, 560, 573
BspT107I GGYRCC 1 cut(s) 362
BspTI CTTAAG 1 cut(s) 614
BspTNI GGTCTC 1 cut(s) 1098
BsrDI GCAATG 4 cut(s) 763, 903, 1028, 1908
BsrFI RCCGGY 1 cut(s) 902
BsrGI TGTACA 1 cut(s) 704
BsrI ACTGG 4 cut(s) 720, 778, 797, 1710
BssAI RCCGGY 1 cut(s) 902
BssECI CCNNGG 6 cut(s) 237, 422, 434, 653, 1272, 1591
BssHII GCGCGC 1 cut(s) 808
BssMI GATC 7 cut(s) 223, 251, 565, 595, 1384, 1446, 2057
BssNAI GTATAC 1 cut(s) 66
BssT1I CCWWGG 3 cut(s) 422, 434, 1272
Bst1107I GTATAC 1 cut(s) 66
Bst2UI CCWGG 4 cut(s) 6, 238, 1593, 1819
Bst4CI ACNGT 4 cut(s) 927, 1321, 1430, 2124
Bst6I CTCTTC 2 cut(s) 1476, 1953
BstAFI CTTAAG 1 cut(s) 614
BstAPI GCANNNNNTGC 1 cut(s) 1298
BstAUI TGTACA 1 cut(s) 704
BstC8I GCNNGC 8 cut(s) 621, 810, 875, 1195, 1492, 1545, 1888, 2032
BstDEI CTNAG 7 cut(s) 264, 518, 772, 1011, 1047, 1626, 1828
BstENI CCTNNNNNAGG 1 cut(s) 1276
BstFNI CGCG 1 cut(s) 810
BstHHI GCGC 2 cut(s) 810, 812
BstKTI GATC 7 cut(s) 226, 254, 568, 598, 1387, 1449, 2060
BstMAI GTCTC 4 cut(s) 986, 1098, 1337, 2060
BstMBI GATC 7 cut(s) 223, 251, 565, 595, 1384, 1446, 2057
BstMWI GCNNNNNNNGC 5 cut(s) 680, 774, 863, 1268, 1298
BstNI CCWGG 4 cut(s) 6, 238, 1593, 1819
BstNSI RCATGY 4 cut(s) 749, 877, 999, 1201
BstSCI CCNGG 6 cut(s) 4, 236, 653, 1465, 1591, 1817
BstSFI CTRYAG 3 cut(s) 828, 1476, 1797
BstUI CGCG 1 cut(s) 810
BstV1I GCAGC 5 cut(s) 199, 780, 1156, 1244, 1783
BstV2I GAAGAC 1 cut(s) 1132
BstX2I RGATCY 2 cut(s) 565, 1446
BstYI RGATCY 2 cut(s) 565, 1446
BstZ17I GTATAC 1 cut(s) 66
BtsI GCAGTG 3 cut(s) 690, 1781, 2079
BtsIMutI CAGTG 6 cut(s) 504, 690, 1313, 1717, 1781, 2079
BveI ACCTGC 2 cut(s) 929, 1899
Cac8I GCNNGC 8 cut(s) 621, 810, 875, 1195, 1492, 1545, 1888, 2032
CfoI GCGC 2 cut(s) 810, 812
Cfr10I RCCGGY 1 cut(s) 902
Cfr13I GGNCC 5 cut(s) 602, 1066, 1546, 1707, 1844
Csp6I GTAC 6 cut(s) 363, 705, 781, 1426, 1605, 2120
CspAI ACCGGT 1 cut(s) 902
CviQI GTAC 6 cut(s) 363, 705, 781, 1426, 1605, 2120
DdeI CTNAG 7 cut(s) 264, 518, 772, 1011, 1047, 1626, 1828
DpnI GATC 7 cut(s) 225, 253, 567, 597, 1386, 1448, 2059
DpnII GATC 7 cut(s) 223, 251, 565, 595, 1384, 1446, 2057
EaeI YGGCCR 4 cut(s) 163, 838, 1216, 1989
Eam1104I CTCTTC 2 cut(s) 1476, 1953
EarI CTCTTC 2 cut(s) 1476, 1953
Ecl136II GAGCTC 1 cut(s) 219
Eco130I CCWWGG 3 cut(s) 422, 434, 1272
Eco147I AGGCCT 1 cut(s) 460
Eco24I GRGCYC 2 cut(s) 122, 221
Eco31I GGTCTC 1 cut(s) 1098
Eco47I GGWCC 1 cut(s) 602
Eco53kI GAGCTC 1 cut(s) 219
Eco57I CTGAAG 1 cut(s) 533
EcoICRI GAGCTC 1 cut(s) 219
EcoNI CCTNNNNNAGG 1 cut(s) 1276
EcoO109I RGGNCCY 1 cut(s) 1546
EcoRI GAATTC 1 cut(s) 916
EcoRII CCWGG 4 cut(s) 4, 236, 1591, 1817
EcoT14I CCWWGG 3 cut(s) 422, 434, 1272
EcoT38I GRGCYC 2 cut(s) 122, 221
ErhI CCWWGG 3 cut(s) 422, 434, 1272
FalI AAGNNNNNCTT 6 cut(s) 514, 546, 1158, 1190, 1950, 1982
FaqI GGGAC 2 cut(s) 636, 1149
FbaI TGATCA 1 cut(s) 223
FblI GTMKAC 1 cut(s) 65
Fnu4HI GCNGC 6 cut(s) 188, 769, 1116, 1170, 1233, 1797
FriOI GRGCYC 2 cut(s) 122, 221
Fsp4HI GCNGC 6 cut(s) 188, 769, 1116, 1170, 1233, 1797
FspBI CTAG 9 cut(s) 243, 423, 435, 854, 1106, 1278, 1491, 1763, 2063
GlaI GCGC 2 cut(s) 809, 811
GluI GCNGC 6 cut(s) 188, 769, 1116, 1170, 1233, 1797
HapII CCGG 5 cut(s) 166, 655, 903, 1375, 1467
HhaI GCGC 2 cut(s) 810, 812
Hin6I GCGC 2 cut(s) 808, 810
HinP1I GCGC 2 cut(s) 808, 810
HincII GTYRAC 1 cut(s) 1598
HindII GTYRAC 1 cut(s) 1598
HindIII AAGCTT 2 cut(s) 545, 1964
HpaII CCGG 5 cut(s) 166, 655, 903, 1375, 1467
HphI GGTGA 7 cut(s) 418, 656, 896, 1001, 1595, 1844, 2050
Hpy166II GTNNAC 2 cut(s) 66, 1598
Hpy188I TCNGA 9 cut(s) 105, 223, 283, 456, 552, 909, 1629, 1666, 1749
Hpy188III TCNNGA 9 cut(s) 314, 374, 803, 1175, 1306, 1561, 1684, 1982, 2075
Hpy8I GTNNAC 2 cut(s) 66, 1598
Hpy99I CGWCG 1 cut(s) 681
HpyAV CCTTC 6 cut(s) 74, 616, 652, 1558, 1690, 1828
HpyCH4III ACNGT 4 cut(s) 927, 1321, 1430, 2124
HpyF10VI GCNNNNNNNGC 5 cut(s) 680, 774, 863, 1268, 1298
HpyF3I CTNAG 7 cut(s) 264, 518, 772, 1011, 1047, 1626, 1828
HspAI GCGC 2 cut(s) 808, 810
KpnI GGTACC 1 cut(s) 366
Ksp22I TGATCA 1 cut(s) 223
Kzo9I GATC 7 cut(s) 223, 251, 565, 595, 1384, 1446, 2057
LmnI GCTCC 2 cut(s) 438, 1540
Lsp1109I GCAGC 5 cut(s) 199, 780, 1156, 1244, 1783
LweI GCATC 5 cut(s) 764, 1219, 1249, 1888, 1909
MaeI CTAG 9 cut(s) 243, 423, 435, 854, 1106, 1278, 1491, 1763, 2063
MaeIII GTNAC 5 cut(s) 137, 884, 1145, 1554, 2105
MalI GATC 7 cut(s) 225, 253, 567, 597, 1386, 1448, 2059
MboI GATC 7 cut(s) 223, 251, 565, 595, 1384, 1446, 2057
MboII GAAGA 8 cut(s) 421, 520, 1137, 1493, 1585, 1823, 1970, 2112
MfeI CAATTG 3 cut(s) 878, 1239, 1608
MflI RGATCY 2 cut(s) 565, 1446
MhlI GDGCHC 2 cut(s) 122, 221
MlsI TGGCCA 2 cut(s) 840, 1218
MluNI TGGCCA 2 cut(s) 840, 1218
MlyI GAGTC 8 cut(s) 134, 275, 487, 567, 1122, 1142, 1424, 1661
MmeI TCCRAC 1 cut(s) 1893
Mox20I TGGCCA 2 cut(s) 840, 1218
MroXI GAANNNNTTC 1 cut(s) 1660
MscI TGGCCA 2 cut(s) 840, 1218
MseI TTAA 3 cut(s) 615, 1326, 1410
MslI CAYNNNNRTG 3 cut(s) 149, 315, 1202
Msp20I TGGCCA 2 cut(s) 840, 1218
MspA1I CMGCKG 1 cut(s) 190
MspCI CTTAAG 1 cut(s) 614
MspI CCGG 5 cut(s) 166, 655, 903, 1375, 1467
MspR9I CCNGG 6 cut(s) 6, 238, 655, 1467, 1593, 1819
MunI CAATTG 3 cut(s) 878, 1239, 1608
MvaI CCWGG 4 cut(s) 6, 238, 1593, 1819
MvnI CGCG 1 cut(s) 810
MwoI GCNNNNNNNGC 5 cut(s) 680, 774, 863, 1268, 1298
NciI CCSGG 2 cut(s) 655, 1467
NdeII GATC 7 cut(s) 223, 251, 565, 595, 1384, 1446, 2057
NheI GCTAGC 1 cut(s) 1490
NlaIV GGNNCC 4 cut(s) 364, 567, 604, 1471
NmuCI GTSAC 4 cut(s) 137, 884, 1145, 2105
NspI RCATGY 4 cut(s) 749, 877, 999, 1201
PaeI GCATGC 1 cut(s) 877
PauI GCGCGC 1 cut(s) 808
PceI AGGCCT 1 cut(s) 460
PciI ACATGT 1 cut(s) 995
PdmI GAANNNNTTC 1 cut(s) 1660
PfeI GAWTC 4 cut(s) 278, 289, 412, 1586
PfoI TCCNGGA 1 cut(s) 1465
PinAI ACCGGT 1 cut(s) 902
PkrI GCNGC 6 cut(s) 189, 770, 1117, 1171, 1234, 1798
PleI GAGTC 8 cut(s) 134, 274, 486, 566, 1122, 1142, 1423, 1661
PpsI GAGTC 8 cut(s) 134, 274, 486, 566, 1122, 1142, 1423, 1661
PscI ACATGT 1 cut(s) 995
Psp124BI GAGCTC 1 cut(s) 221
Psp6I CCWGG 4 cut(s) 4, 236, 1591, 1817
PspGI CCWGG 4 cut(s) 4, 236, 1591, 1817
PspN4I GGNNCC 4 cut(s) 364, 567, 604, 1471
PspPI GGNCC 5 cut(s) 602, 1066, 1546, 1707, 1844
PstI CTGCAG 2 cut(s) 1480, 1801
PsuI RGATCY 2 cut(s) 565, 1446
PteI GCGCGC 1 cut(s) 808
PvuII CAGCTG 1 cut(s) 190
RsaI GTAC 6 cut(s) 364, 706, 782, 1427, 1606, 2121
RsaNI GTAC 6 cut(s) 363, 705, 781, 1426, 1605, 2120
RseI CAYNNNNRTG 3 cut(s) 149, 315, 1202
SacI GAGCTC 1 cut(s) 221
SaqAI TTAA 3 cut(s) 615, 1326, 1410
SatI GCNGC 6 cut(s) 188, 769, 1116, 1170, 1233, 1797
Sau3AI GATC 7 cut(s) 223, 251, 565, 595, 1384, 1446, 2057
Sau96I GGNCC 5 cut(s) 602, 1066, 1546, 1707, 1844
SchI GAGTC 8 cut(s) 134, 275, 487, 567, 1122, 1142, 1424, 1661
ScrFI CCNGG 6 cut(s) 6, 238, 655, 1467, 1593, 1819
SduI GDGCHC 2 cut(s) 122, 221
SfaNI GCATC 5 cut(s) 764, 1219, 1249, 1888, 1909
SfcI CTRYAG 3 cut(s) 828, 1476, 1797
SinI GGWCC 1 cut(s) 602
SmiMI CAYNNNNRTG 3 cut(s) 149, 315, 1202
SmlI CTYRAG 6 cut(s) 614, 665, 803, 1175, 1550, 1559
SmoI CTYRAG 6 cut(s) 614, 665, 803, 1175, 1550, 1559
SphI GCATGC 1 cut(s) 877
SseBI AGGCCT 1 cut(s) 460
SsiI CCGC 3 cut(s) 1115, 1494, 2002
SspMI CTAG 9 cut(s) 243, 423, 435, 854, 1106, 1278, 1491, 1763, 2063
SstI GAGCTC 1 cut(s) 221
StuI AGGCCT 1 cut(s) 460
StyD4I CCNGG 6 cut(s) 4, 236, 653, 1465, 1591, 1817
StyI CCWWGG 3 cut(s) 422, 434, 1272
TaaI ACNGT 4 cut(s) 927, 1321, 1430, 2124
TaqI TCGA 7 cut(s) 179, 269, 506, 561, 982, 1000, 2076
TatI WGTACW 3 cut(s) 704, 780, 1604
TauI GCSGC 1 cut(s) 1118
TfiI GAWTC 4 cut(s) 278, 289, 412, 1586
Tru1I TTAA 3 cut(s) 615, 1326, 1410
Tru9I TTAA 3 cut(s) 615, 1326, 1410
TscAI CASTG 6 cut(s) 504, 690, 1320, 1717, 1781, 2086
TseFI GTSAC 4 cut(s) 137, 884, 1145, 2105
TseI GCWGC 5 cut(s) 187, 768, 1169, 1232, 1796
Tsp45I GTSAC 4 cut(s) 137, 884, 1145, 2105
TspDTI ATGAA 4 cut(s) 36, 557, 1179, 1544
TspRI CASTG 6 cut(s) 504, 690, 1320, 1717, 1781, 2086
Vha464I CTTAAG 1 cut(s) 614
VpaK11BI GGWCC 1 cut(s) 602
XagI CCTNNNNNAGG 1 cut(s) 1276
XapI RAATTY 2 cut(s) 916, 1929
XceI RCATGY 4 cut(s) 749, 877, 999, 1201
XcmI CCANNNNNNNNNTGG 3 cut(s) 727, 1085, 1930
XmaJI CCTAGG 2 cut(s) 422, 434
XmiI GTMKAC 1 cut(s) 65
XmnI GAANNNNTTC 1 cut(s) 1660
XspI CTAG 9 cut(s) 243, 423, 435, 854, 1106, 1278, 1491, 1763, 2063
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.