MD17G1034400.v1.1

Tetratricopeptide repeat

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr17
OG0010792
Physical Location & Seq
Reverse (-)
2482809 .. 2486510
3702 bp
Loading structure...
UTR
Exon/CDS
Intron
MD17G1034400.v1.1.491

Sequence Viewer

Length: 2133 bp
ATGCCCGGACTAGCTATGGATGCTATGAATCGAAACGGCGATGTAGATGAATCAAATGGAGATTATGCGCCTCAAAAGGAAAGCTACAGCCAGCAGGGCTCTCCGAGAAGTACGTTGAGTTCTCGGAGTGGCTCCATCGGTATGGCTATGAATGGCGGGATTGATACCTCTATTGAGCAGTTATATCACAACGTCTGCGAAATGCAGAGCTCGGATCAATCCCCTTCCCGGGCCAGCTTTGGATCGTTCGGTGGGGAATCGAGGATTGATTCCGAACTAAACCATCTTGTCGGATATGCTCGACAGGATTTGGAGATAAGGAAAGAGGTTGTTGTGGAAAACAAGGAGGAGGGTGTTTGTAGTGACTCAACTCCTGAGAAAGCAAATGTATCGGATGATAAACGGTCTCCAACGAAAGTGAAGTCTCCATCTGCGAAAACAAGTCCGAAGAGCAAATCTCCTGATGAGAAGCCTCCGCATCCGAGAAAAGGCAATGCACTATTGTCGAAGAACAAGCTGAGGAGTTTTGTTTTACGCGGCAGCGTGAGGTTTCAGAATGGAGTCGATGATCATCCTCCTGAAGCCGTGTTGGATAACCCTGATCTCGGGCCATATTTGCTCAAGCAAACAAGGGAAATGATTGCTTCGGGCGAAAACCCCAAGAAAGCGCTTGAGTTATCTCTCCGTGCAGTGAAAGCGTTCGAGAAATGCACTGGTGAGAAGCCTAATTTGGAGTTCGTTATGTGTTTGCATGTTTTGGCAGCAATCTATTGCAGCTTAGAGAAGTACAATGAGGCAATTCCAGTCCTCGAGCGTGCCATTGATATTCCGGCGATAGAGGATGGTGATAACTATGCACTAGCAAAGTTTGCAGGGTGCATGCAATTAGGTGACATTTATGCAATGACCGGTCAGATTGAGAATTCAATTTTGTTCTATACAGCAGGTATGGAAATTCAAAGGCAAGTCTTGGGAGAAAAGGACCCGCGATTGGGTGAGACGTGTCGTTATGTAGCTGAGGCACATGTGCAAGCATTGCAATTCGACGATGCTGAGAAGCTCTGTCAGATGGCTCTTGAAATCCACAGGGAAAATGGTTCTGCTTCGCTTGAGGAAGCGGCAGATAGAAGACTCATGGGACTGATCTGTGACTCAAAAGGGGATTTCGAAGCTGCTCTTGAGCACTATGTTTTAGCAAGCATGTCAATGTCTGCCAATGATATGGAAGCGGATGCAGCATCAATCGATTGTAGCATTGGAGACGCGTATCTATCTTTGGCAAGGTATGATGAGGCGGTGTTTTCTTACCAGAAAGCACTTACTGTGTTCAAGACAACGAAAGGAGAGACACATCCGACAGTAGCTTCTGTTTACGTTCGTTTAGCTGACTTGTACAACAAGATAGGAAGGTTTAAGGAGTCCAAATCCTACTGCGAAAATGCACATCGAATTTATGGGAAACCTAATCCCGGAATCCCCTCAGAAGAGATTGCCGGTGGTCTCATTGATGTTGCTGCAATCTATCAATCCATGAATGATCTGGAACAAGCCCTGAAGTTGCTCAAGAAGGCTTTGAAAATCTTCGGCAATGCTCCGGGCCACCAGGGCACAACTGCAGGAATTGAGGCTCAGATGGGGGTAATGTACTATATGATGGGAAATTACACTGACTCATACAACACATTCAAGAGTTCCATAACAAAGTTCCGCGCCACGGGAGAAAAGAAATCGGCATTGTTTGGGATTGCACTGAACCAAATGGGGTTGGCCTGCGTTCAGCGGTTTTCGATCAACGAGGCTGCAGACTTGTTTGAAGAAGCCAGGAACATCTTGGAGAAGGAGTATGGACCTTATCACCCTGACACATTGGGGGTTTACAGTAATTTAGCTGGCACATATGATGCAATGGGCAGGTTGGATGCCGCCATCGAGATTCTGGAGTATGTTGTTGGCATGAGAGAGGACAAGCTTGGAACAGCAAATCCGGATGTGGCGGACGAGAAGCGGAGGTTGGCGGAGTTGTTGAAAGAAGCCGGCAGGGCTAGGAACCGGAAACCCAGATCGCTGGAGACACTTCTCGACACCAGCAAACCCCCACAGATCATAAAACACGACATCATCGAGGTATTGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000003 GO:0000902 GO:0000904 GO:0001655 GO:0001822 GO:0001889 GO:0001894 GO:0001895 GO:0001947 GO:0002009 GO:0003006 GO:0003007 GO:0003143 GO:0003205 GO:0003230 GO:0003279 GO:0003283 GO:0003341 GO:0003351 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005886 GO:0005929 GO:0006928 GO:0006996 GO:0007017 GO:0007018 GO:0007275 GO:0007368 GO:0007369 GO:0007389 GO:0007507 GO:0008150 GO:0009653 GO:0009790 GO:0009799 GO:0009826 GO:0009855 GO:0009856 GO:0009860 GO:0009887 GO:0009888 GO:0009932 GO:0009966 GO:0009968 GO:0009987 GO:0010646 GO:0010648 GO:0016020 GO:0016043 GO:0016049 GO:0022414 GO:0022603 GO:0022607 GO:0023051 GO:0023057 GO:0030030 GO:0030031 GO:0030111 GO:0030154 GO:0030178 GO:0030323 GO:0030324 GO:0031016 GO:0031347 GO:0032501 GO:0032502 GO:0032989 GO:0035050 GO:0035239 GO:0035295 GO:0035469 GO:0040007 GO:0042592 GO:0042995 GO:0043226 GO:0044085 GO:0044424 GO:0044444 GO:0044464 GO:0044706 GO:0044782 GO:0045494 GO:0045595 GO:0045596 GO:0045995 GO:0048468 GO:0048496 GO:0048513 GO:0048519 GO:0048523 GO:0048562 GO:0048565 GO:0048568 GO:0048583 GO:0048585 GO:0048588 GO:0048589 GO:0048598 GO:0048729 GO:0048731 GO:0048732 GO:0048856 GO:0048868 GO:0048869 GO:0048871 GO:0050789 GO:0050793 GO:0050794 GO:0051093 GO:0051239 GO:0051704 GO:0051960 GO:0055123 GO:0060026 GO:0060027 GO:0060249 GO:0060271 GO:0060287 GO:0060429 GO:0060541 GO:0060560 GO:0060562 GO:0060828 GO:0060993 GO:0061008 GO:0061371 GO:0065007 GO:0065008 GO:0070925 GO:0071840 GO:0071907 GO:0071908 GO:0071909 GO:0071910 GO:0071944 GO:0072001 GO:0072189 GO:0072359 GO:0080134 GO:0090090 GO:0090175 GO:0090178 GO:0120025 GO:0120031 GO:0120036 GO:1905276 GO:1905330 GO:2000026 GO:2000027 GO:2000050 GO:2000095 GO:2000167
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
TPR_10 TPR_12 TPR_7 TPR_8

Protein Analysis

711

Amino Acids

78.1

Weight (kDa)

5.32

Isoelectric Point (pI)

40.57

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
TPR_12 PF13424 338 - 396 1.5e-06 Tetratricopeptide repeat
TPR_MalT PF17874 378 - 530 3.4e-08 MalT-like TPR region
TPR_NPHP3 PF24885 407 - 541 2.1e-09 Nephrocystin-3 TPR domain
TPR_12 PF13424 412 - 485 2.4e-09 Tetratricopeptide repeat
TPR_12 PF13424 454 - 528 1.5e-09 Tetratricopeptide repeat
TPR_12 PF13424 501 - 566 1e-05 Tetratricopeptide repeat
TPR_12 PF13424 541 - 613 6.8e-06 Tetratricopeptide repeat
TPR_12 PF13424 582 - 648 1.5e-11 Tetratricopeptide repeat
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0010792)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G27960 AT3G27960 AT3G27960
fragaria_vesca FvH4_6g50730
malus_domestica MD09G1033100.v1.1 MD17G1034400.v1.1
prunus_persica Prupe.3G285200_v2.0.a1 Prupe.3G285200_v2.0.a1
pyrus_communis pycom111g02640 pycom17g03180
rosa_chinensis RchiOBHm_Chr2g0171671
rosa_laevigata RLG00000022027
rosa_multiflora Rmu_ssc0000252.1_g000009
rosa_roxburghii Rroxscaffold_2G00080540
rosa_rugosa Rorug02G0555200
rosa_samantha Rh2AG630200 Rh2BG640700 Rh2BG643200 Rh2CG609000
rosa_wichuraiana Rw2G052150

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 2 cut(s) 935, 1902
AccII CGCG 4 cut(s) 537, 988, 1265, 1710
AccIII TCCGGA 1 cut(s) 1984
AclWI GGATC 2 cut(s) 222, 250
AcsI RAATTY 3 cut(s) 922, 954, 1449
AcuI CTGAAG 2 cut(s) 600, 1574
AfaI GTAC 4 cut(s) 112, 788, 1394, 1646
AfeI AGCGCT 1 cut(s) 669
AfiI CCNNNNNNNGG 8 cut(s) 228, 229, 488, 605, 991, 992, 1469, 1714
AflIII ACRYGT 3 cut(s) 1001, 1024, 1263
AgeI ACCGGT 1 cut(s) 908
AgsI TTSAA 8 cut(s) 927, 959, 1079, 1330, 1576, 1687, 1814, 2026
AjiI CACGTC 1 cut(s) 1002
AjnI CCWGG 2 cut(s) 1602, 1820
AjuI GAANNNNNNNTTGG 4 cut(s) 713, 745, 1994, 2026
AloI GAACNNNNNNTCC 2 cut(s) 1966, 1998
Alw21I GWGCWC 2 cut(s) 212, 1185
Alw26I GTCTC 7 cut(s) 411, 429, 992, 1254, 1340, 1505, 2063
AlwI GGATC 2 cut(s) 222, 250
Ama87I CYCGRG 3 cut(s) 228, 605, 809
Aor13HI TCCGGA 1 cut(s) 1984
Aor51HI AGCGCT 1 cut(s) 669
AoxI GGCC 4 cut(s) 231, 608, 1597, 1767
ApeKI GCWGC 7 cut(s) 540, 761, 774, 1172, 1235, 1514, 1799
ApoI RAATTY 3 cut(s) 922, 954, 1449
ArsI GACNNNNNNTTYG 2 cut(s) 407, 439
AsiGI ACCGGT 1 cut(s) 908
Asp700I GAANNNNTTC 2 cut(s) 698, 1580
AspLEI GCGC 3 cut(s) 70, 670, 1712
AspS9I GGNCC 5 cut(s) 231, 608, 982, 1597, 1847
AsuC2I CCSGG 5 cut(s) 6, 229, 230, 1470, 1596
AsuHPI GGTGA 5 cut(s) 728, 857, 902, 1007, 1847
AsuII TTCGAA 1 cut(s) 1167
AvaI CYCGRG 3 cut(s) 228, 605, 809
AvaII GGWCC 2 cut(s) 982, 1847
BaeGI GKGCMC 1 cut(s) 1610
BanII GRGCYC 2 cut(s) 101, 212
BbsI GAAGAC 1 cut(s) 1135
Bbv12I GWGCWC 2 cut(s) 212, 1185
BbvCI CCTCAGC 2 cut(s) 518, 1017
BbvI GCAGC 7 cut(s) 552, 773, 786, 1159, 1247, 1501, 1786
BccI CCATC 8 cut(s) 143, 291, 436, 836, 1063, 1627, 1648, 1934
BceAI ACGGC 2 cut(s) 52, 569
BcgI CGANNNNNNTGC 4 cut(s) 372, 406, 486, 520
BciT130I CCWGG 2 cut(s) 1604, 1822
BclI TGATCA 1 cut(s) 568
BcnI CCSGG 5 cut(s) 6, 229, 230, 1470, 1596
BcoDI GTCTC 7 cut(s) 411, 429, 992, 1254, 1340, 1505, 2063
BfaI CTAG 3 cut(s) 11, 860, 2043
BfmI CTRYAG 3 cut(s) 85, 1614, 1800
BfoI RGCGCY 1 cut(s) 671
BfuAI ACCTGC 2 cut(s) 935, 1902
BglI GCCNNNNNGGC 3 cut(s) 96, 1605, 2039
Bme1390I CCNGG 7 cut(s) 6, 229, 230, 1470, 1596, 1604, 1822
Bme18I GGWCC 2 cut(s) 982, 1847
BmeT110I CYCGRG 3 cut(s) 228, 605, 809
BmgBI CACGTC 1 cut(s) 1002
BmgT120I GGNCC 5 cut(s) 231, 608, 982, 1597, 1847
BmiI GGNNCC 3 cut(s) 133, 984, 2048
BmrFI CCNGG 7 cut(s) 6, 229, 230, 1470, 1596, 1604, 1822
BmsI GCATC 7 cut(s) 10, 487, 1039, 1222, 1247, 1891, 1909
BpiI GAAGAC 1 cut(s) 1135
BplI GAGNNNNNCTC 2 cut(s) 442, 474
BpmI CTGGAG 2 cut(s) 1958, 2087
Bpu10I CCTNAGC 2 cut(s) 518, 1017
Bpu14I TTCGAA 1 cut(s) 1167
BpuEI CTTGAG 5 cut(s) 605, 692, 1130, 1199, 1547
BpuMI CCSGG 5 cut(s) 6, 229, 230, 1470, 1596
Bsa29I ATCGAT 1 cut(s) 1245
BsaBI GATNNNNATC 1 cut(s) 570
BsaI GGTCTC 2 cut(s) 411, 1505
BsaJI CCNNGG 3 cut(s) 228, 1603, 1713
BsaWI WCCGGW 3 cut(s) 908, 1984, 2049
BsaXI ACNNNNNCTCC 2 cut(s) 1826, 1856
Bsc4I CCNNNNNNNGG 8 cut(s) 228, 229, 488, 605, 991, 992, 1469, 1714
Bse118I RCCGGY 3 cut(s) 908, 1493, 2033
Bse1I ACTGG 2 cut(s) 718, 803
Bse3DI GCAATG 5 cut(s) 499, 909, 1034, 1594, 1911
Bse8I GATNNNNATC 1 cut(s) 570
BseAI TCCGGA 1 cut(s) 1984
BseBI CCWGG 2 cut(s) 1604, 1822
BseCI ATCGAT 1 cut(s) 1245
BseDI CCNNGG 3 cut(s) 228, 1603, 1713
BseGI GGATG 9 cut(s) 25, 400, 478, 571, 847, 1237, 1351, 1924, 1993
BseJI GATNNNNATC 1 cut(s) 570
BseLI CCNNNNNNNGG 8 cut(s) 228, 229, 488, 605, 991, 992, 1469, 1714
BseMI GCAATG 5 cut(s) 499, 909, 1034, 1594, 1911
BseMII CTCAG 6 cut(s) 366, 509, 1008, 1044, 1494, 1643
BseNI ACTGG 2 cut(s) 718, 803
BseRI GAGGAG 2 cut(s) 362, 535
BseSI GKGCMC 1 cut(s) 1610
BseXI GCAGC 7 cut(s) 552, 773, 786, 1159, 1247, 1501, 1786
BsgI GTGCAG 1 cut(s) 708
Bsh1236I CGCG 4 cut(s) 537, 988, 1265, 1710
BshFI GGCC 4 cut(s) 233, 610, 1599, 1769
BshTI ACCGGT 1 cut(s) 908
BshVI ATCGAT 1 cut(s) 1245
BsiHKAI GWGCWC 2 cut(s) 212, 1185
BsiHKCI CYCGRG 3 cut(s) 228, 605, 809
BslFI GGGAC 1 cut(s) 1152
BslI CCNNNNNNNGG 8 cut(s) 228, 229, 488, 605, 991, 992, 1469, 1714
BsmAI GTCTC 7 cut(s) 411, 429, 992, 1254, 1340, 1505, 2063
BsmBI CGTCTC 2 cut(s) 992, 1254
BsmFI GGGAC 1 cut(s) 1152
BsnI GGCC 4 cut(s) 233, 610, 1599, 1769
Bso31I GGTCTC 2 cut(s) 411, 1505
BsoBI CYCGRG 3 cut(s) 228, 605, 809
Bsp119I TTCGAA 1 cut(s) 1167
Bsp1286I GDGCHC 4 cut(s) 101, 212, 1185, 1610
Bsp13I TCCGGA 1 cut(s) 1984
Bsp1407I TGTACA 1 cut(s) 1392
Bsp143I GATC 9 cut(s) 214, 242, 568, 601, 1143, 1537, 1788, 2060, 2100
BspANI GGCC 4 cut(s) 233, 610, 1599, 1769
BspCNI CTCAG 6 cut(s) 367, 510, 1009, 1045, 1493, 1642
BspDI ATCGAT 1 cut(s) 1245
BspEI TCCGGA 1 cut(s) 1984
BspFNI CGCG 4 cut(s) 537, 988, 1265, 1710
BspLI GGNNCC 3 cut(s) 133, 984, 2048
BspMAI CTGCAG 2 cut(s) 1618, 1804
BspMI ACCTGC 2 cut(s) 935, 1902
BspPI GGATC 2 cut(s) 222, 250
BspQI GCTCTTC 1 cut(s) 443
BspT104I TTCGAA 1 cut(s) 1167
BspTNI GGTCTC 2 cut(s) 411, 1505
BsrDI GCAATG 5 cut(s) 499, 909, 1034, 1594, 1911
BsrFI RCCGGY 3 cut(s) 908, 1493, 2033
BsrGI TGTACA 1 cut(s) 1392
BsrI ACTGG 2 cut(s) 718, 803
BssAI RCCGGY 3 cut(s) 908, 1493, 2033
BssECI CCNNGG 3 cut(s) 228, 1603, 1713
BssMI GATC 9 cut(s) 214, 242, 568, 601, 1143, 1537, 1788, 2060, 2100
Bst2UI CCWGG 2 cut(s) 1604, 1822
Bst4CI ACNGT 4 cut(s) 405, 1324, 1360, 1880
Bst6I CTCTTC 2 cut(s) 443, 1479
BstAPI GCANNNNNTGC 2 cut(s) 869, 1036
BstAUI TGTACA 1 cut(s) 1392
BstBI TTCGAA 1 cut(s) 1167
BstC8I GCNNGC 9 cut(s) 92, 235, 816, 881, 1032, 1198, 1771, 1891, 2035
BstDEI CTNAG 7 cut(s) 375, 518, 778, 1017, 1053, 1480, 1629
BstDSI CCRYGG 1 cut(s) 1713
BstF5I GGATG 9 cut(s) 25, 400, 478, 571, 847, 1237, 1351, 1924, 1993
BstFNI CGCG 4 cut(s) 537, 988, 1265, 1710
BstH2I RGCGCY 1 cut(s) 671
BstHHI GCGC 3 cut(s) 70, 670, 1712
BstKTI GATC 9 cut(s) 217, 245, 571, 604, 1146, 1540, 1791, 2063, 2103
BstMAI GTCTC 7 cut(s) 411, 429, 992, 1254, 1340, 1505, 2063
BstMBI GATC 9 cut(s) 214, 242, 568, 601, 1143, 1537, 1788, 2060, 2100
BstMWI GCNNNNNNNGC 9 cut(s) 20, 96, 616, 695, 869, 1036, 1235, 1605, 2039
BstNI CCWGG 2 cut(s) 1604, 1822
BstNSI RCATGY 4 cut(s) 755, 883, 1028, 1204
BstSCI CCNGG 7 cut(s) 4, 227, 228, 1468, 1594, 1602, 1820
BstSFI CTRYAG 3 cut(s) 85, 1614, 1800
BstSLI GKGCMC 1 cut(s) 1610
BstUI CGCG 4 cut(s) 537, 988, 1265, 1710
BstV1I GCAGC 7 cut(s) 552, 773, 786, 1159, 1247, 1501, 1786
BstV2I GAAGAC 1 cut(s) 1135
BstXI CCANNNNNNTGG 3 cut(s) 142, 1222, 2065
Bsu15I ATCGAT 1 cut(s) 1245
BsuRI GGCC 4 cut(s) 233, 610, 1599, 1769
BsuTUI ATCGAT 1 cut(s) 1245
BtgI CCRYGG 1 cut(s) 1713
BtgZI GCGATG 1 cut(s) 54
BtrI CACGTC 1 cut(s) 1002
BtsCI GGATG 9 cut(s) 25, 400, 478, 571, 847, 1237, 1351, 1924, 1993
BtsI GCAGTG 1 cut(s) 696
BtsIMutI CAGTG 4 cut(s) 696, 711, 1665, 1748
BveI ACCTGC 2 cut(s) 935, 1902
Cac8I GCNNGC 9 cut(s) 92, 235, 816, 881, 1032, 1198, 1771, 1891, 2035
CfoI GCGC 3 cut(s) 70, 670, 1712
Cfr10I RCCGGY 3 cut(s) 908, 1493, 2033
Cfr13I GGNCC 5 cut(s) 231, 608, 982, 1597, 1847
Cfr9I CCCGGG 1 cut(s) 228
ClaI ATCGAT 1 cut(s) 1245
CseI GACGC 1 cut(s) 1271
Csp6I GTAC 4 cut(s) 111, 787, 1393, 1645
CspAI ACCGGT 1 cut(s) 908
CviAII CATG 7 cut(s) 752, 880, 1025, 1135, 1201, 1531, 1954
CviQI GTAC 4 cut(s) 111, 787, 1393, 1645
DdeI CTNAG 7 cut(s) 375, 518, 778, 1017, 1053, 1480, 1629
DpnI GATC 9 cut(s) 216, 244, 570, 603, 1145, 1539, 1790, 2062, 2102
DpnII GATC 9 cut(s) 214, 242, 568, 601, 1143, 1537, 1788, 2060, 2100
Eam1104I CTCTTC 2 cut(s) 443, 1479
EarI CTCTTC 2 cut(s) 443, 1479
EciI GGCGGA 2 cut(s) 2009, 2030
Ecl136II GAGCTC 1 cut(s) 210
Eco24I GRGCYC 2 cut(s) 101, 212
Eco31I GGTCTC 2 cut(s) 411, 1505
Eco47I GGWCC 2 cut(s) 982, 1847
Eco47III AGCGCT 1 cut(s) 669
Eco53kI GAGCTC 1 cut(s) 210
Eco57I CTGAAG 2 cut(s) 600, 1574
Eco88I CYCGRG 3 cut(s) 228, 605, 809
EcoICRI GAGCTC 1 cut(s) 210
EcoO109I RGGNCCY 1 cut(s) 982
EcoRI GAATTC 1 cut(s) 922
EcoRII CCWGG 2 cut(s) 1602, 1820
EcoT38I GRGCYC 2 cut(s) 101, 212
Esp3I CGTCTC 2 cut(s) 992, 1254
FaeI CATG 7 cut(s) 755, 883, 1028, 1138, 1204, 1534, 1957
FalI AAGNNNNNCTT 2 cut(s) 1161, 1193
FaqI GGGAC 1 cut(s) 1152
FatI CATG 7 cut(s) 751, 879, 1024, 1134, 1200, 1530, 1953
FauI CCCGC 2 cut(s) 149, 993
FauNDI CATATG 1 cut(s) 1897
FbaI TGATCA 1 cut(s) 568
FokI GGATG 9 cut(s) 32, 407, 465, 558, 854, 1244, 1338, 1931, 2000
FriOI GRGCYC 2 cut(s) 101, 212
FspBI CTAG 3 cut(s) 11, 860, 2043
GlaI GCGC 3 cut(s) 69, 669, 1711
GsuI CTGGAG 2 cut(s) 1958, 2087
HaeII RGCGCY 1 cut(s) 671
HaeIII GGCC 4 cut(s) 233, 610, 1599, 1769
HgaI GACGC 1 cut(s) 1271
HhaI GCGC 3 cut(s) 70, 670, 1712
Hin1II CATG 7 cut(s) 755, 883, 1028, 1138, 1204, 1534, 1957
Hin6I GCGC 3 cut(s) 68, 668, 1710
HinP1I GCGC 3 cut(s) 68, 668, 1710
HindIII AAGCTT 1 cut(s) 1967
HphI GGTGA 5 cut(s) 728, 857, 902, 1007, 1847
Hpy166II GTNNAC 2 cut(s) 1372, 1876
Hpy8I GTNNAC 2 cut(s) 1372, 1876
Hpy99I CGWCG 1 cut(s) 1049
HpyAV CCTTC 4 cut(s) 234, 1401, 1561, 1831
HpyCH4III ACNGT 4 cut(s) 405, 1324, 1360, 1880
HpyCH4IV ACGT 4 cut(s) 113, 192, 1001, 1374
HpyF10VI GCNNNNNNNGC 9 cut(s) 20, 96, 616, 695, 869, 1036, 1235, 1605, 2039
HpyF3I CTNAG 7 cut(s) 375, 518, 778, 1017, 1053, 1480, 1629
HpySE526I ACGT 4 cut(s) 113, 192, 1001, 1374
Hsp92II CATG 7 cut(s) 755, 883, 1028, 1138, 1204, 1534, 1957
HspAI GCGC 3 cut(s) 68, 668, 1710
Kpn2I TCCGGA 1 cut(s) 1984
KroI GCCGGC 1 cut(s) 2033
KroNI GCCGGC 1 cut(s) 2035
Ksp22I TGATCA 1 cut(s) 568
Kzo9I GATC 9 cut(s) 214, 242, 568, 601, 1143, 1537, 1788, 2060, 2100
LguI GCTCTTC 1 cut(s) 443
LmnI GCTCC 2 cut(s) 137, 1597
Lsp1109I GCAGC 7 cut(s) 552, 773, 786, 1159, 1247, 1501, 1786
LweI GCATC 7 cut(s) 10, 487, 1039, 1222, 1247, 1891, 1909
MaeI CTAG 3 cut(s) 11, 860, 2043
MaeII ACGT 4 cut(s) 113, 192, 1001, 1374
MaeIII GTNAC 3 cut(s) 362, 890, 1148
MalI GATC 9 cut(s) 216, 244, 570, 603, 1145, 1539, 1790, 2062, 2102
MboI GATC 9 cut(s) 214, 242, 568, 601, 1143, 1537, 1788, 2060, 2100
MboII GAAGA 6 cut(s) 460, 520, 1140, 1496, 1573, 1826
MhlI GDGCHC 4 cut(s) 101, 212, 1185, 1610
MluI ACGCGT 1 cut(s) 1263
MlyI GAGTC 6 cut(s) 359, 570, 1125, 1145, 1427, 1664
MmeI TCCRAC 5 cut(s) 271, 434, 570, 1379, 1896
MroI TCCGGA 1 cut(s) 1984
MroNI GCCGGC 1 cut(s) 2033
MroXI GAANNNNTTC 2 cut(s) 698, 1580
MseI TTAA 1 cut(s) 1413
MslI CAYNNNNRTG 2 cut(s) 140, 1205
MspA1I CMGCKG 1 cut(s) 1780
MspR9I CCNGG 7 cut(s) 6, 229, 230, 1470, 1596, 1604, 1822
MvaI CCWGG 2 cut(s) 1604, 1822
MvnI CGCG 4 cut(s) 537, 988, 1265, 1710
MwoI GCNNNNNNNGC 9 cut(s) 20, 96, 616, 695, 869, 1036, 1235, 1605, 2039
NaeI GCCGGC 1 cut(s) 2035
NciI CCSGG 5 cut(s) 6, 229, 230, 1470, 1596
NdeI CATATG 1 cut(s) 1897
NdeII GATC 9 cut(s) 214, 242, 568, 601, 1143, 1537, 1788, 2060, 2100
NgoMIV GCCGGC 1 cut(s) 2033
NlaIII CATG 7 cut(s) 755, 883, 1028, 1138, 1204, 1534, 1957
NlaIV GGNNCC 3 cut(s) 133, 984, 2048
NmuCI GTSAC 3 cut(s) 362, 890, 1148
NspI RCATGY 4 cut(s) 755, 883, 1028, 1204
NspV TTCGAA 1 cut(s) 1167
PaeI GCATGC 1 cut(s) 883
PaeR7I CTCGAG 1 cut(s) 809
PciI ACATGT 1 cut(s) 1024
PciSI GCTCTTC 1 cut(s) 443
PcsI WCGNNNNNNNCGW 1 cut(s) 2118
PdiI GCCGGC 1 cut(s) 2035
PdmI GAANNNNTTC 2 cut(s) 698, 1580
PfeI GAWTC 6 cut(s) 28, 50, 257, 269, 1473, 1933
PfoI TCCNGGA 1 cut(s) 1468
PinAI ACCGGT 1 cut(s) 908
PleI GAGTC 6 cut(s) 359, 569, 1125, 1145, 1426, 1664
PpsI GAGTC 6 cut(s) 359, 569, 1125, 1145, 1426, 1664
PpuMI RGGWCCY 1 cut(s) 982
PscI ACATGT 1 cut(s) 1024
Psp124BI GAGCTC 1 cut(s) 212
Psp5II RGGWCCY 1 cut(s) 982
Psp6I CCWGG 2 cut(s) 1602, 1820
PspGI CCWGG 2 cut(s) 1602, 1820
PspN4I GGNNCC 3 cut(s) 133, 984, 2048
PspPI GGNCC 5 cut(s) 231, 608, 982, 1597, 1847
PspPPI RGGWCCY 1 cut(s) 982
PspXI VCTCGAGB 1 cut(s) 809
PsrI GAACNNNNNNTAC 2 cut(s) 103, 135
PstI CTGCAG 2 cut(s) 1618, 1804
RsaI GTAC 4 cut(s) 112, 788, 1394, 1646
RsaNI GTAC 4 cut(s) 111, 787, 1393, 1645
RseI CAYNNNNRTG 2 cut(s) 140, 1205
SacI GAGCTC 1 cut(s) 212
SapI GCTCTTC 1 cut(s) 443
SaqAI TTAA 1 cut(s) 1413
Sau3AI GATC 9 cut(s) 214, 242, 568, 601, 1143, 1537, 1788, 2060, 2100
Sau96I GGNCC 5 cut(s) 231, 608, 982, 1597, 1847
SchI GAGTC 6 cut(s) 359, 570, 1125, 1145, 1427, 1664
ScrFI CCNGG 7 cut(s) 6, 229, 230, 1470, 1596, 1604, 1822
SduI GDGCHC 4 cut(s) 101, 212, 1185, 1610
SfaNI GCATC 7 cut(s) 10, 487, 1039, 1222, 1247, 1891, 1909
SfcI CTRYAG 3 cut(s) 85, 1614, 1800
Sfr274I CTCGAG 1 cut(s) 809
SfuI TTCGAA 1 cut(s) 1167
SinI GGWCC 2 cut(s) 982, 1847
SlaI CTCGAG 1 cut(s) 809
SmaI CCCGGG 1 cut(s) 230
SmiMI CAYNNNNRTG 2 cut(s) 140, 1205
SmlI CTYRAG 6 cut(s) 620, 671, 809, 1109, 1178, 1562
SmoI CTYRAG 6 cut(s) 620, 671, 809, 1109, 1178, 1562
SphI GCATGC 1 cut(s) 883
SspMI CTAG 3 cut(s) 11, 860, 2043
SstI GAGCTC 1 cut(s) 212
StyD4I CCNGG 7 cut(s) 4, 227, 228, 1468, 1594, 1602, 1820
TaaI ACNGT 4 cut(s) 405, 1324, 1360, 1880
TaiI ACGT 4 cut(s) 116, 195, 1004, 1377
TatI WGTACW 3 cut(s) 786, 1392, 1644
TauI GCSGC 3 cut(s) 540, 1121, 1925
TfiI GAWTC 6 cut(s) 28, 50, 257, 269, 1473, 1933
Tru1I TTAA 1 cut(s) 1413
Tru9I TTAA 1 cut(s) 1413
TscAI CASTG 4 cut(s) 696, 718, 1672, 1755
TseFI GTSAC 3 cut(s) 362, 890, 1148
TseI GCWGC 7 cut(s) 540, 761, 774, 1172, 1235, 1514, 1799
Tsp45I GTSAC 3 cut(s) 362, 890, 1148
TspDTI ATGAA 4 cut(s) 41, 63, 164, 1547
TspGWI ACGGA 1 cut(s) 674
TspMI CCCGGG 1 cut(s) 228
TspRI CASTG 4 cut(s) 696, 718, 1672, 1755
VpaK11BI GGWCC 2 cut(s) 982, 1847
XapI RAATTY 3 cut(s) 922, 954, 1449
XceI RCATGY 4 cut(s) 755, 883, 1028, 1204
XcmI CCANNNNNNNNNTGG 4 cut(s) 1091, 1537, 1828, 1933
XhoI CTCGAG 1 cut(s) 809
XmaI CCCGGG 1 cut(s) 228
XmnI GAANNNNTTC 2 cut(s) 698, 1580
XspI CTAG 3 cut(s) 11, 860, 2043
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.