MD09G1033100.v1.1

Tetratricopeptide repeat

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr09
OG0010792
Physical Location & Seq
Reverse (-)
2007337 .. 2009847
2511 bp
Loading structure...
UTR
Exon/CDS
Intron
MD09G1033100.v1.1.491

Sequence Viewer

Length: 2004 bp
ATGGCTATGAATGGCGGGATTGATACCTCTACTGAGCAGTTATATCACAACATCTGCGAAATGCAGAGCTCGGACCAATCCCCTTCCTGGGCCAGCTTTGGATCGTTCGGTGAGGAATCGAGGATTGACTCCGAGCTAAACCATCTTGTCGGATATACTCCAGAGGATTTGGAGATAAGGAAGGAGGTGGTTGTGGAAAACAAGGAGGAGGGTGTTTGTAGTGACTCAACTCCTGAGAAAGCAAATGTTAAAAGGTCTCCAACGAAAGTGAAGTCTCCATCTGCGAAAACAAGTCCGAAGAGCAAATCTACTAACGAGAAGCCTCCGCTTGATAAGAGGAATGGGAAGAATCCGAAAAAAGGCAATGTGATATTGTCTAAGAACAAGCATAGGAGTTTTGGTTTACGCGGTGGGGTGAGGTTTCGGAATGGCGTCGATGATCATCCTCCTGAGGTGGGGTTGAATAACCTTGACCTCGGGCCATATTTGCTCAAACAAACGAGGGATTTGATTTCTTCTGGCGAAAACCCCAAGAAAGCGCTCAAGTTAGCTCTCCGGGCAGTGGAATTGTTCGAGAAATGCACGAGCGGGAAGCCCAATTTAGAGCTGGTTATGTGTTTGCATGTTTTGGCAGCAATATATTGCAGCTTAGGGAAGTACAATGAGGCGATTCCAGTTCTTGAGCGCGCCATTGACATTCCAGCGATAGAGGATGGCGATAACTATGCACTAGCCAAGTTTGCAGGGTGCATGCAATTAGGTGACATTTATGCAATGACCGGTCAGATCGAGAACTCAATATTATTTTATACAGCAGGTATGGAAATTCAAAGGCAAGTCTTGGGAGACAAGGACCTGCGATTGGGTGAGACATGTCGGTATGTAGCAGAGGCGCACGTTCAAGCATTGCAATTCGACGAGGCTCAGAAGCTTTGTCAGATGGCGCTCGAAATCCACAGGGAGAATGGTTCTGCTTCCCTCGAGGAAGCGGCAGATAGAAGACTCATGGGACTAATCTGTGACTCAAAAGGAGAATTCGAAGCTGCTCTTGAGCATTATGTTTTGGCAAACATGTCAATGTCTGCCAATGATCAGGAAGTGGATGCAGCTTCGATAGATTGCAGCATTGGTGACGCGTACCTATCCTTGGCACGGTATGATGAGGCGGTGTTTTCTTACCAGAAAGCTCTCACTGTGTTTAAGACAACGAAAGGAGAGACTCATCCGGCGGTAGCTTCTGTTTATGTTCGTTTAGCTGACTTGCACAACAAGATAGGAAAGTTTAAGGAGTCCAAATCATACTGCGAAAATGCACATCAAATTTATGGGAAACCTAATCCCGGAATCCCCTCAGAAGAGATTGCTGGAGGTCTCATTGATGTTTCTGCAATCTATCAATCCATGAATGATCTGGAACAGGCCCTGAAGTTGCTCAAGAAGGCTTTGAAAATATTCGGTGATGCTCCAGGCCACCAGAGCACAAGTGCAGGAATTGAGGCTCAGATGGGGGTAATGTACTATATGATGGGAAATTTTACTGACTCTTACAGCACATTCAAGAGTTCCATAACCAAGTTCCGTGCCACAGGAGAAAAGAAATCGGCGTTGTTTGGGATTGCTCTCAACCAAATGGGGCTAGCCTGCGTTCAGCGTTACTCGATCAATGAGGCTGCAGACTTGTTTGAAGAAGCCAGGAAAATCTTGGAGAAGGAGTATGGACCTTATCACCCTGACACATTAGGGGTTTATAGTAATTTGGCTGGCACATACGATGCAATGGGCAGGTTGGATGCGGCCATTGAGACTCTGGAGTATGTTGTTGGCATGAGAGAGGAGAAGCTGGGAACAGCAAATCCGGATGTGGCGGATGAGAAGCGGAGGTTGTCCGAGTTGTTGAAAGAAGCCGGCAGGGCTCGGAACAAGAAAACCAGATCATTGGAGACACTTCTCGACGCCAACAACCCCCCACAAATTATAAAACAAGACATCATCGAGGTATCGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000003 GO:0000902 GO:0000904 GO:0001655 GO:0001822 GO:0001889 GO:0001894 GO:0001895 GO:0001947 GO:0002009 GO:0003006 GO:0003007 GO:0003143 GO:0003205 GO:0003230 GO:0003279 GO:0003283 GO:0003341 GO:0003351 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005886 GO:0005929 GO:0006928 GO:0006996 GO:0007017 GO:0007018 GO:0007275 GO:0007368 GO:0007369 GO:0007389 GO:0007507 GO:0008150 GO:0009653 GO:0009790 GO:0009799 GO:0009826 GO:0009855 GO:0009856 GO:0009860 GO:0009887 GO:0009888 GO:0009932 GO:0009966 GO:0009968 GO:0009987 GO:0010646 GO:0010648 GO:0016020 GO:0016043 GO:0016049 GO:0022414 GO:0022603 GO:0022607 GO:0023051 GO:0023057 GO:0030030 GO:0030031 GO:0030111 GO:0030154 GO:0030178 GO:0030323 GO:0030324 GO:0031016 GO:0031347 GO:0032501 GO:0032502 GO:0032989 GO:0035050 GO:0035239 GO:0035295 GO:0035469 GO:0040007 GO:0042592 GO:0042995 GO:0043226 GO:0044085 GO:0044424 GO:0044444 GO:0044464 GO:0044706 GO:0044782 GO:0045494 GO:0045595 GO:0045596 GO:0045995 GO:0048468 GO:0048496 GO:0048513 GO:0048519 GO:0048523 GO:0048562 GO:0048565 GO:0048568 GO:0048583 GO:0048585 GO:0048588 GO:0048589 GO:0048598 GO:0048729 GO:0048731 GO:0048732 GO:0048856 GO:0048868 GO:0048869 GO:0048871 GO:0050789 GO:0050793 GO:0050794 GO:0051093 GO:0051239 GO:0051704 GO:0051960 GO:0055123 GO:0060026 GO:0060027 GO:0060249 GO:0060271 GO:0060287 GO:0060429 GO:0060541 GO:0060560 GO:0060562 GO:0060828 GO:0060993 GO:0061008 GO:0061371 GO:0065007 GO:0065008 GO:0070925 GO:0071840 GO:0071907 GO:0071908 GO:0071909 GO:0071910 GO:0071944 GO:0072001 GO:0072189 GO:0072359 GO:0080134 GO:0090090 GO:0090175 GO:0090178 GO:0120025 GO:0120031 GO:0120036 GO:1905276 GO:1905330 GO:2000026 GO:2000027 GO:2000050 GO:2000095 GO:2000167
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
TPR_10 TPR_12 TPR_7 TPR_8

Protein Analysis

668

Amino Acids

73.49

Weight (kDa)

5.6

Isoelectric Point (pI)

40.13

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
TPR_12 PF13424 176 - 233 1.5e-06 Tetratricopeptide repeat
TPR_12 PF13424 295 - 353 2.5e-06 Tetratricopeptide repeat
TPR_MalT PF17874 296 - 444 3.8e-09 MalT-like TPR region
TPR_NPHP3 PF24885 361 - 494 1.2e-09 Nephrocystin-3 TPR domain
TPR_12 PF13424 369 - 442 6.6e-09 Tetratricopeptide repeat
TPR_12 PF13424 412 - 485 3e-08 Tetratricopeptide repeat
TPR_12 PF13424 540 - 608 1.1e-10 Tetratricopeptide repeat
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0010792)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G27960 AT3G27960 AT3G27960
fragaria_vesca FvH4_6g50730
malus_domestica MD09G1033100.v1.1 MD17G1034400.v1.1
prunus_persica Prupe.3G285200_v2.0.a1 Prupe.3G285200_v2.0.a1
pyrus_communis pycom111g02640 pycom17g03180
rosa_chinensis RchiOBHm_Chr2g0171671
rosa_laevigata RLG00000022027
rosa_multiflora Rmu_ssc0000252.1_g000009
rosa_roxburghii Rroxscaffold_2G00080540
rosa_rugosa Rorug02G0555200
rosa_samantha Rh2AG630200 Rh2BG640700 Rh2BG643200 Rh2CG609000
rosa_wichuraiana Rw2G052150

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 1976
AbsI CCTCGAGG 1 cut(s) 980
Acc36I ACCTGC 3 cut(s) 806, 864, 1773
AccBSI CCGCTC 1 cut(s) 588
AccII CGCG 3 cut(s) 408, 687, 1136
AccIII TCCGGA 1 cut(s) 1855
AclWI GGATC 1 cut(s) 109
AcoI YGGCCR 1 cut(s) 1794
AcsI RAATTY 4 cut(s) 825, 1034, 1320, 1531
AcuI CTGAAG 1 cut(s) 1445
AcyI GRCGYC 2 cut(s) 432, 1953
AfaI GTAC 3 cut(s) 659, 1139, 1517
AfeI AGCGCT 1 cut(s) 540
AfiI CCNNNNNNNGG 9 cut(s) 87, 88, 359, 455, 562, 862, 1147, 1152, 1340
AflIII ACRYGT 3 cut(s) 872, 1071, 1134
AgeI ACCGGT 1 cut(s) 779
AgsI TTSAA 7 cut(s) 463, 830, 902, 1447, 1558, 1685, 1897
AjnI CCWGG 3 cut(s) 86, 1465, 1691
AloI GAACNNNNNNTCC 2 cut(s) 1837, 1869
Alw21I GWGCWC 2 cut(s) 71, 1481
Alw26I GTCTC 8 cut(s) 261, 279, 840, 863, 1211, 1376, 1796, 1934
AlwI GGATC 1 cut(s) 109
AlwNI CAGNNNCTG 1 cut(s) 1423
Ama87I CYCGRG 2 cut(s) 476, 980
Aor13HI TCCGGA 1 cut(s) 1855
Aor51HI AGCGCT 1 cut(s) 540
AoxI GGCC 5 cut(s) 90, 479, 1419, 1468, 1794
ApeKI GCWGC 6 cut(s) 632, 645, 1043, 1106, 1122, 1670
ApoI RAATTY 4 cut(s) 825, 1034, 1320, 1531
ArsI GACNNNNNNTTYG 2 cut(s) 257, 289
AsiGI ACCGGT 1 cut(s) 779
Asp700I GAANNNNTTC 1 cut(s) 1451
AspLEI GCGC 5 cut(s) 541, 687, 689, 895, 946
AspS9I GGNCC 6 cut(s) 73, 90, 479, 853, 1420, 1718
AsuC2I CCSGG 2 cut(s) 557, 1341
AsuHPI GGTGA 7 cut(s) 122, 427, 773, 878, 1142, 1469, 1718
AsuII TTCGAA 1 cut(s) 1038
AsuNHI GCTAGC 1 cut(s) 1636
AvaI CYCGRG 2 cut(s) 476, 980
AvaII GGWCC 3 cut(s) 73, 853, 1718
AxyI CCTNAGG 1 cut(s) 450
BanII GRGCYC 2 cut(s) 71, 1915
BauI CACGAG 1 cut(s) 583
BbsI GAAGAC 1 cut(s) 1006
Bbv12I GWGCWC 2 cut(s) 71, 1481
BbvI GCAGC 6 cut(s) 644, 657, 1030, 1118, 1134, 1657
BccI CCATC 6 cut(s) 150, 286, 707, 934, 1498, 1519
BcgI CGANNNNNNTGC 2 cut(s) 707, 741
BciT130I CCWGG 3 cut(s) 88, 1467, 1693
BclI TGATCA 2 cut(s) 439, 1090
BcnI CCSGG 2 cut(s) 557, 1341
BcoDI GTCTC 8 cut(s) 261, 279, 840, 863, 1211, 1376, 1796, 1934
BfaI CTAG 2 cut(s) 731, 1637
BfmI CTRYAG 1 cut(s) 1671
BfoI RGCGCY 2 cut(s) 542, 947
BfuAI ACCTGC 3 cut(s) 806, 864, 1773
BglI GCCNNNNNGGC 1 cut(s) 1910
BisI GCNGC 8 cut(s) 633, 646, 990, 1044, 1107, 1123, 1671, 1794
BlsI GCNGC 8 cut(s) 634, 647, 991, 1045, 1108, 1124, 1672, 1795
Bme1390I CCNGG 5 cut(s) 88, 557, 1341, 1467, 1693
Bme18I GGWCC 3 cut(s) 73, 853, 1718
BmeT110I CYCGRG 2 cut(s) 476, 980
BmgT120I GGNCC 6 cut(s) 73, 90, 479, 853, 1420, 1718
BmrFI CCNGG 5 cut(s) 88, 557, 1341, 1467, 1693
BmsI GCATC 4 cut(s) 1093, 1450, 1762, 1780
BmtI GCTAGC 1 cut(s) 1640
BpiI GAAGAC 1 cut(s) 1006
BpmI CTGGAG 4 cut(s) 144, 1386, 1449, 1829
Bpu10I CCTNAGC 1 cut(s) 649
Bpu14I TTCGAA 1 cut(s) 1038
BpuEI CTTGAG 4 cut(s) 527, 701, 1070, 1418
BpuMI CCSGG 2 cut(s) 557, 1341
BsaBI GATNNNNATC 1 cut(s) 441
BsaHI GRCGYC 2 cut(s) 432, 1953
BsaI GGTCTC 2 cut(s) 261, 1376
BsaJI CCNNGG 3 cut(s) 87, 475, 1146
BsaWI WCCGGW 2 cut(s) 779, 1855
BsaXI ACNNNNNCTCC 4 cut(s) 385, 415, 1697, 1727
Bsc4I CCNNNNNNNGG 9 cut(s) 87, 88, 359, 455, 562, 862, 1147, 1152, 1340
Bse118I RCCGGY 2 cut(s) 779, 1904
Bse1I ACTGG 1 cut(s) 674
Bse21I CCTNAGG 1 cut(s) 450
Bse3DI GCAATG 4 cut(s) 370, 780, 905, 1782
Bse8I GATNNNNATC 1 cut(s) 441
BseAI TCCGGA 1 cut(s) 1855
BseBI CCWGG 3 cut(s) 88, 1467, 1693
BseDI CCNNGG 3 cut(s) 87, 475, 1146
BseGI GGATG 7 cut(s) 442, 718, 1108, 1222, 1795, 1864, 1873
BseJI GATNNNNATC 1 cut(s) 441
BseLI CCNNNNNNNGG 9 cut(s) 87, 88, 359, 455, 562, 862, 1147, 1152, 1340
BseMI GCAATG 4 cut(s) 370, 780, 905, 1782
BseMII CTCAG 6 cut(s) 24, 225, 441, 938, 1365, 1514
BseNI ACTGG 1 cut(s) 674
BsePI GCGCGC 1 cut(s) 685
BseRI GAGGAG 2 cut(s) 221, 1847
BseXI GCAGC 6 cut(s) 644, 657, 1030, 1118, 1134, 1657
BseYI CCCAGC 1 cut(s) 1840
BsgI GTGCAG 1 cut(s) 1506
Bsh1236I CGCG 3 cut(s) 408, 687, 1136
BshFI GGCC 5 cut(s) 92, 481, 1421, 1470, 1796
BshTI ACCGGT 1 cut(s) 779
BsiHKAI GWGCWC 2 cut(s) 71, 1481
BsiHKCI CYCGRG 2 cut(s) 476, 980
BsiSI CCGG 6 cut(s) 556, 780, 1226, 1341, 1856, 1905
BslFI GGGAC 1 cut(s) 1023
BslI CCNNNNNNNGG 9 cut(s) 87, 88, 359, 455, 562, 862, 1147, 1152, 1340
BsmAI GTCTC 8 cut(s) 261, 279, 840, 863, 1211, 1376, 1796, 1934
BsmFI GGGAC 1 cut(s) 1023
BsnI GGCC 5 cut(s) 92, 481, 1421, 1470, 1796
Bso31I GGTCTC 2 cut(s) 261, 1376
BsoBI CYCGRG 2 cut(s) 476, 980
Bsp119I TTCGAA 1 cut(s) 1038
Bsp1286I GDGCHC 3 cut(s) 71, 1481, 1915
Bsp13I TCCGGA 1 cut(s) 1855
Bsp143I GATC 7 cut(s) 101, 439, 786, 1090, 1408, 1659, 1931
BspANI GGCC 5 cut(s) 92, 481, 1421, 1470, 1796
BspCNI CTCAG 6 cut(s) 25, 226, 442, 937, 1364, 1513
BspEI TCCGGA 1 cut(s) 1855
BspFNI CGCG 3 cut(s) 408, 687, 1136
BspMAI CTGCAG 1 cut(s) 1675
BspMI ACCTGC 3 cut(s) 806, 864, 1773
BspOI GCTAGC 1 cut(s) 1640
BspPI GGATC 1 cut(s) 109
BspQI GCTCTTC 1 cut(s) 293
BspT104I TTCGAA 1 cut(s) 1038
BspTNI GGTCTC 2 cut(s) 261, 1376
BsrBI CCGCTC 1 cut(s) 588
BsrDI GCAATG 4 cut(s) 370, 780, 905, 1782
BsrFI RCCGGY 2 cut(s) 779, 1904
BsrI ACTGG 1 cut(s) 674
BssAI RCCGGY 2 cut(s) 779, 1904
BssECI CCNNGG 3 cut(s) 87, 475, 1146
BssHII GCGCGC 1 cut(s) 685
BssMI GATC 7 cut(s) 101, 439, 786, 1090, 1408, 1659, 1931
BssNI GRCGYC 2 cut(s) 432, 1953
BssSI CACGAG 1 cut(s) 583
BssT1I CCWWGG 1 cut(s) 1146
Bst2BI CACGAG 1 cut(s) 583
Bst2UI CCWGG 3 cut(s) 88, 1467, 1693
Bst4CI ACNGT 2 cut(s) 1155, 1195
Bst6I CTCTTC 2 cut(s) 293, 1350
BstACI GRCGYC 2 cut(s) 432, 1953
BstBI TTCGAA 1 cut(s) 1038
BstC8I GCNNGC 7 cut(s) 94, 687, 752, 1638, 1642, 1762, 1906
BstDEI CTNAG 8 cut(s) 33, 234, 378, 450, 649, 924, 1351, 1500
BstF5I GGATG 7 cut(s) 442, 718, 1108, 1222, 1795, 1864, 1873
BstFNI CGCG 3 cut(s) 408, 687, 1136
BstH2I RGCGCY 2 cut(s) 542, 947
BstHHI GCGC 5 cut(s) 541, 687, 689, 895, 946
BstKTI GATC 7 cut(s) 104, 442, 789, 1093, 1411, 1662, 1934
BstMAI GTCTC 8 cut(s) 261, 279, 840, 863, 1211, 1376, 1796, 1934
BstMBI GATC 7 cut(s) 101, 439, 786, 1090, 1408, 1659, 1931
BstMWI GCNNNNNNNGC 5 cut(s) 487, 557, 740, 1476, 1910
BstNI CCWGG 3 cut(s) 88, 1467, 1693
BstNSI RCATGY 4 cut(s) 626, 754, 876, 1075
BstSCI CCNGG 5 cut(s) 86, 555, 1339, 1465, 1691
BstSFI CTRYAG 1 cut(s) 1671
BstUI CGCG 3 cut(s) 408, 687, 1136
BstV1I GCAGC 6 cut(s) 644, 657, 1030, 1118, 1134, 1657
BstV2I GAAGAC 1 cut(s) 1006
BstXI CCANNNNNNTGG 1 cut(s) 1936
Bsu36I CCTNAGG 1 cut(s) 450
BsuRI GGCC 5 cut(s) 92, 481, 1421, 1470, 1796
BtsCI GGATG 7 cut(s) 442, 718, 1108, 1222, 1795, 1864, 1873
BtsI GCAGTG 1 cut(s) 567
BtsIMutI CAGTG 2 cut(s) 567, 1191
BveI ACCTGC 3 cut(s) 806, 864, 1773
Cac8I GCNNGC 7 cut(s) 94, 687, 752, 1638, 1642, 1762, 1906
CaiI CAGNNNCTG 1 cut(s) 1423
CfoI GCGC 5 cut(s) 541, 687, 689, 895, 946
Cfr10I RCCGGY 2 cut(s) 779, 1904
Cfr13I GGNCC 6 cut(s) 73, 90, 479, 853, 1420, 1718
CseI GACGC 3 cut(s) 421, 1142, 1961
Csp6I GTAC 3 cut(s) 658, 1138, 1516
CspAI ACCGGT 1 cut(s) 779
CviAII CATG 7 cut(s) 623, 751, 873, 1006, 1072, 1402, 1825
CviQI GTAC 3 cut(s) 658, 1138, 1516
DdeI CTNAG 8 cut(s) 33, 234, 378, 450, 649, 924, 1351, 1500
DpnI GATC 7 cut(s) 103, 441, 788, 1092, 1410, 1661, 1933
DpnII GATC 7 cut(s) 101, 439, 786, 1090, 1408, 1659, 1931
EaeI YGGCCR 1 cut(s) 1794
Eam1104I CTCTTC 2 cut(s) 293, 1350
EarI CTCTTC 2 cut(s) 293, 1350
EciI GGCGGA 1 cut(s) 1880
Ecl136II GAGCTC 1 cut(s) 69
Eco130I CCWWGG 1 cut(s) 1146
Eco24I GRGCYC 2 cut(s) 71, 1915
Eco31I GGTCTC 2 cut(s) 261, 1376
Eco47I GGWCC 3 cut(s) 73, 853, 1718
Eco47III AGCGCT 1 cut(s) 540
Eco53kI GAGCTC 1 cut(s) 69
Eco57I CTGAAG 1 cut(s) 1445
Eco81I CCTNAGG 1 cut(s) 450
Eco88I CYCGRG 2 cut(s) 476, 980
EcoICRI GAGCTC 1 cut(s) 69
EcoO109I RGGNCCY 2 cut(s) 853, 1420
EcoRI GAATTC 1 cut(s) 1034
EcoRII CCWGG 3 cut(s) 86, 1465, 1691
EcoT14I CCWWGG 1 cut(s) 1146
EcoT38I GRGCYC 2 cut(s) 71, 1915
ErhI CCWWGG 1 cut(s) 1146
FaeI CATG 7 cut(s) 626, 754, 876, 1009, 1075, 1405, 1828
FalI AAGNNNNNCTT 2 cut(s) 1032, 1064
FaqI GGGAC 1 cut(s) 1023
FatI CATG 7 cut(s) 622, 750, 872, 1005, 1071, 1401, 1824
FauI CCCGC 2 cut(s) 8, 581
FbaI TGATCA 2 cut(s) 439, 1090
Fnu4HI GCNGC 8 cut(s) 633, 646, 990, 1044, 1107, 1123, 1671, 1794
FokI GGATG 7 cut(s) 429, 725, 1115, 1209, 1802, 1871, 1880
FriOI GRGCYC 2 cut(s) 71, 1915
Fsp4HI GCNGC 8 cut(s) 633, 646, 990, 1044, 1107, 1123, 1671, 1794
FspBI CTAG 2 cut(s) 731, 1637
GlaI GCGC 5 cut(s) 540, 686, 688, 894, 945
GluI GCNGC 8 cut(s) 633, 646, 990, 1044, 1107, 1123, 1671, 1794
GsaI CCCAGC 1 cut(s) 1844
GsuI CTGGAG 4 cut(s) 144, 1386, 1449, 1829
HaeII RGCGCY 2 cut(s) 542, 947
HaeIII GGCC 5 cut(s) 92, 481, 1421, 1470, 1796
HapII CCGG 6 cut(s) 556, 780, 1226, 1341, 1856, 1905
HgaI GACGC 3 cut(s) 421, 1142, 1961
HhaI GCGC 5 cut(s) 541, 687, 689, 895, 946
Hin1I GRCGYC 2 cut(s) 432, 1953
Hin1II CATG 7 cut(s) 626, 754, 876, 1009, 1075, 1405, 1828
Hin6I GCGC 5 cut(s) 539, 685, 687, 893, 944
HinP1I GCGC 5 cut(s) 539, 685, 687, 893, 944
HindIII AAGCTT 1 cut(s) 929
HpaII CCGG 6 cut(s) 556, 780, 1226, 1341, 1856, 1905
HphI GGTGA 7 cut(s) 122, 427, 773, 878, 1142, 1469, 1718
Hpy166II GTNNAC 1 cut(s) 404
Hpy8I GTNNAC 1 cut(s) 404
Hpy99I CGWCG 3 cut(s) 437, 920, 1955
HpyAV CCTTC 4 cut(s) 93, 175, 1432, 1702
HpyCH4III ACNGT 2 cut(s) 1155, 1195
HpyCH4IV ACGT 1 cut(s) 897
HpyF10VI GCNNNNNNNGC 5 cut(s) 487, 557, 740, 1476, 1910
HpyF3I CTNAG 8 cut(s) 33, 234, 378, 450, 649, 924, 1351, 1500
HpySE526I ACGT 1 cut(s) 897
Hsp92I GRCGYC 2 cut(s) 432, 1953
Hsp92II CATG 7 cut(s) 626, 754, 876, 1009, 1075, 1405, 1828
HspAI GCGC 5 cut(s) 539, 685, 687, 893, 944
Kpn2I TCCGGA 1 cut(s) 1855
KroI GCCGGC 1 cut(s) 1904
KroNI GCCGGC 1 cut(s) 1906
Ksp22I TGATCA 2 cut(s) 439, 1090
Kzo9I GATC 7 cut(s) 101, 439, 786, 1090, 1408, 1659, 1931
LguI GCTCTTC 1 cut(s) 293
LmnI GCTCC 1 cut(s) 1468
Lsp1109I GCAGC 6 cut(s) 644, 657, 1030, 1118, 1134, 1657
LweI GCATC 4 cut(s) 1093, 1450, 1762, 1780
MaeI CTAG 2 cut(s) 731, 1637
MaeII ACGT 1 cut(s) 897
MaeIII GTNAC 5 cut(s) 221, 761, 1019, 1130, 1652
MalI GATC 7 cut(s) 103, 441, 788, 1092, 1410, 1661, 1933
MbiI CCGCTC 1 cut(s) 588
MboI GATC 7 cut(s) 101, 439, 786, 1090, 1408, 1659, 1931
MboII GAAGA 6 cut(s) 310, 358, 507, 1011, 1367, 1697
MhlI GDGCHC 3 cut(s) 71, 1481, 1915
MluI ACGCGT 1 cut(s) 1134
MlyI GAGTC 8 cut(s) 122, 218, 996, 1016, 1213, 1298, 1535, 1798
MmeI TCCRAC 3 cut(s) 130, 284, 1767
MroI TCCGGA 1 cut(s) 1855
MroNI GCCGGC 1 cut(s) 1904
MroXI GAANNNNTTC 1 cut(s) 1451
MseI TTAA 3 cut(s) 249, 1200, 1284
MslI CAYNNNNRTG 1 cut(s) 1076
MspI CCGG 6 cut(s) 556, 780, 1226, 1341, 1856, 1905
MspR9I CCNGG 5 cut(s) 88, 557, 1341, 1467, 1693
MvaI CCWGG 3 cut(s) 88, 1467, 1693
MvnI CGCG 3 cut(s) 408, 687, 1136
MwoI GCNNNNNNNGC 5 cut(s) 487, 557, 740, 1476, 1910
NaeI GCCGGC 1 cut(s) 1906
NciI CCSGG 2 cut(s) 557, 1341
NdeII GATC 7 cut(s) 101, 439, 786, 1090, 1408, 1659, 1931
NgoMIV GCCGGC 1 cut(s) 1904
NheI GCTAGC 1 cut(s) 1636
NlaIII CATG 7 cut(s) 626, 754, 876, 1009, 1075, 1405, 1828
NmuCI GTSAC 4 cut(s) 221, 761, 1019, 1130
NspI RCATGY 4 cut(s) 626, 754, 876, 1075
NspV TTCGAA 1 cut(s) 1038
PaeI GCATGC 1 cut(s) 754
PaeR7I CTCGAG 1 cut(s) 980
PauI GCGCGC 1 cut(s) 685
PciI ACATGT 2 cut(s) 872, 1071
PciSI GCTCTTC 1 cut(s) 293
PdiI GCCGGC 1 cut(s) 1906
PdmI GAANNNNTTC 1 cut(s) 1451
PfeI GAWTC 4 cut(s) 116, 349, 670, 1344
PfoI TCCNGGA 1 cut(s) 1339
PinAI ACCGGT 1 cut(s) 779
PkrI GCNGC 8 cut(s) 634, 647, 991, 1045, 1108, 1124, 1672, 1795
PleI GAGTC 8 cut(s) 122, 218, 996, 1016, 1213, 1297, 1535, 1798
PpsI GAGTC 8 cut(s) 122, 218, 996, 1016, 1213, 1297, 1535, 1798
PpuMI RGGWCCY 1 cut(s) 853
PscI ACATGT 2 cut(s) 872, 1071
PsiI TTATAA 1 cut(s) 1976
Psp124BI GAGCTC 1 cut(s) 71
Psp5II RGGWCCY 1 cut(s) 853
Psp6I CCWGG 3 cut(s) 86, 1465, 1691
PspFI CCCAGC 1 cut(s) 1840
PspGI CCWGG 3 cut(s) 86, 1465, 1691
PspPI GGNCC 6 cut(s) 73, 90, 479, 853, 1420, 1718
PspPPI RGGWCCY 1 cut(s) 853
PspXI VCTCGAGB 1 cut(s) 980
PstI CTGCAG 1 cut(s) 1675
PstNI CAGNNNCTG 1 cut(s) 1423
PteI GCGCGC 1 cut(s) 685
RsaI GTAC 3 cut(s) 659, 1139, 1517
RsaNI GTAC 3 cut(s) 658, 1138, 1516
RseI CAYNNNNRTG 1 cut(s) 1076
SacI GAGCTC 1 cut(s) 71
SapI GCTCTTC 1 cut(s) 293
SaqAI TTAA 3 cut(s) 249, 1200, 1284
SatI GCNGC 8 cut(s) 633, 646, 990, 1044, 1107, 1123, 1671, 1794
Sau3AI GATC 7 cut(s) 101, 439, 786, 1090, 1408, 1659, 1931
Sau96I GGNCC 6 cut(s) 73, 90, 479, 853, 1420, 1718
SchI GAGTC 8 cut(s) 122, 218, 996, 1016, 1213, 1298, 1535, 1798
ScrFI CCNGG 5 cut(s) 88, 557, 1341, 1467, 1693
SduI GDGCHC 3 cut(s) 71, 1481, 1915
SfaNI GCATC 4 cut(s) 1093, 1450, 1762, 1780
SfcI CTRYAG 1 cut(s) 1671
Sfr274I CTCGAG 1 cut(s) 980
SfuI TTCGAA 1 cut(s) 1038
SinI GGWCC 3 cut(s) 73, 853, 1718
SlaI CTCGAG 1 cut(s) 980
SmiMI CAYNNNNRTG 1 cut(s) 1076
SmlI CTYRAG 5 cut(s) 542, 680, 980, 1049, 1433
SmoI CTYRAG 5 cut(s) 542, 680, 980, 1049, 1433
SphI GCATGC 1 cut(s) 754
SspI AATATT 2 cut(s) 801, 1452
SspMI CTAG 2 cut(s) 731, 1637
SstI GAGCTC 1 cut(s) 71
StyD4I CCNGG 5 cut(s) 86, 555, 1339, 1465, 1691
StyI CCWWGG 1 cut(s) 1146
TaaI ACNGT 2 cut(s) 1155, 1195
TaiI ACGT 1 cut(s) 900
TatI WGTACW 2 cut(s) 657, 1515
TauI GCSGC 2 cut(s) 992, 1796
TfiI GAWTC 4 cut(s) 116, 349, 670, 1344
Tru1I TTAA 3 cut(s) 249, 1200, 1284
Tru9I TTAA 3 cut(s) 249, 1200, 1284
TscAI CASTG 2 cut(s) 567, 1198
TseFI GTSAC 4 cut(s) 221, 761, 1019, 1130
TseI GCWGC 6 cut(s) 632, 645, 1043, 1106, 1122, 1670
Tsp45I GTSAC 4 cut(s) 221, 761, 1019, 1130
TspDTI ATGAA 2 cut(s) 23, 1418
TspGWI ACGGA 1 cut(s) 1568
TspRI CASTG 2 cut(s) 567, 1198
VpaK11BI GGWCC 3 cut(s) 73, 853, 1718
XapI RAATTY 4 cut(s) 825, 1034, 1320, 1531
XceI RCATGY 4 cut(s) 626, 754, 876, 1075
XcmI CCANNNNNNNNNTGG 5 cut(s) 604, 962, 1408, 1699, 1804
XhoI CTCGAG 1 cut(s) 980
XmnI GAANNNNTTC 1 cut(s) 1451
XspI CTAG 2 cut(s) 731, 1637
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.