AT3G28850

glutaredoxin family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
3
OG0012964
Physical Location & Seq
Forward (+)
10848241 .. 10850286
2046 bp
Loading structure...
UTR
Exon/CDS
Intron
AT3G28850.1

Sequence Viewer

Length: 1287 bp
ATGGGTTGTGCGAGTTCGAAGCATCGTAAGCGTTGTCTCCATTGCCGGAGAGGATATTCTCCTCCGGTGGATGTACAGAGAAGTCACTCAGTGCATCACGCATCGCAAAACTCTGAAGATAGTTGTCACATGGTGGCTCTAAGTTCCTCAAGCCTTGGATCTCTCAAGCTATGTGATTCTTCTTTTGGGCATAATCACAAACACTTGGCGGACTTTAGCGAGAAGCTTGTTTCTGGCGAATCTGTGAAAACTGGAAATGGGTTTGGTCCGAATGTTGTCAGAGAGAAGTCAGATAAAGAGAAATCGAATTTGGAATTGCAAGCTAAGCTTATGGAAGCAAAGGTATGGTCAAGTATGATGAATGAGAAGATACCGAAGATTGTACCGAAAACTCCCATTGTTACGCCTCCTGGTGAGCCAGAAACGATTAATACTTGGGAAATGATGGATGGTCTTGAAGATGTTTTGAGTCCTTTACGATCACCTAATCATGTTAAGAGTTTCTCGTTTGATGTTGGTCCTAATGGAGGTAAGTCTAATGGTAGTGTTAAGCCGGTATGGCTTCAAATGGAGGAGGAAGAAGAAGGGTTTGAAGATTTTGATCCTGAGATCATTTCTTCGTTTAGGAAATCGCTTCAAGAACTTCCTTCTGATCATCCGTTTCACATTTCGAACCACGATTTCGAATTGAAACCGCGGTTCAATTTCTCTGATGAGGAAAAGGAGGAGGAGGAACAAAGTGTTGGTAAAGAGAGAGTGATACTTTACTTTACAAGTCTTAGAGGTATAAGGAAGACTTATGAAGAAAGCTGTGATGTTCGGGTTATACTAAAAAGCCTCGGGATTAGAGTGGATGAGCGAGATGTGTCGATGCATTCGGGTTTCAAAGACGAGTTGAAGGAGCTACTAGGGGAAAAGTTTAACAAAGGTGTTGGGATTACTTTACCTAGAGTTTTCTTGGGAAGGAAGTATATTGGGGGAGCAGAGGAGATTCGGAAGTTAAACGAAGATGGGAAGCTTGAGAAGCTTCTTGGAGGGTGTGAGAGGGTGGAAGAAAACCAAAATGGTAATGGTCTAGAATGTGAAGCTTGTGGAGATGTAAGGTTTGTGCCGTGTGAGACATGTTCAGGGAGCTGCAAAGTGTACTATGAATATGAAGATGATGATGATGATGATGATGAAGGTGATGATGATGAAAGTGTTAAGGAAGAAAGAGAGTATGGGTTTCAAACATGTCCTGATTGTAATGAGAATGGTCTCATTAGATGTCCTGTTTGTTGTGATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005623 GO:0005886 GO:0016020 GO:0044464 GO:0071944
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Glutaredoxin

Protein Analysis

428

Amino Acids

48.18

Weight (kDa)

4.98

Isoelectric Point (pI)

47.38

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Glutaredoxin PF00462 254 - 325 2.6e-08 Glutaredoxin
GRXCR1-2_C PF23733 361 - 427 3.4e-21 GRXCR1/2, C-terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0012964)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G28850 AT5G39865
fragaria_vesca FvH4_6g48990
malus_domestica MD09G1049100.v1.1 MD17G1049100.v1.1
prunus_persica Prupe.3G269700_v2.0.a1
pyrus_communis pycom111g04010 pycom17g04410
rosa_chinensis RchiOBHm_Chr2g0168831
rosa_laevigata RLG00000021810
rosa_multiflora Rmu_ssc0000393.1_g000006
rosa_roxburghii Rroxscaffold_2G00082640
rosa_rugosa Rorug02G0535600
rosa_samantha Rh2AG606600 Rh2BG619400 Rh2CG588000 Rh2DG630000
rosa_wichuraiana Rw2G050280

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 697
AciI CCGC 3 cut(s) 209, 695, 697
AclWI GGATC 2 cut(s) 166, 596
AcsI RAATTY 1 cut(s) 307
AcuI CTGAAG 1 cut(s) 135
AdeI CACNNNGTG 2 cut(s) 91, 133
AfaI GTAC 3 cut(s) 75, 384, 1145
AfiI CCNNNNNNNGG 1 cut(s) 527
AflIII ACRYGT 2 cut(s) 1121, 1232
AgsI TTSAA 9 cut(s) 458, 566, 593, 638, 691, 703, 886, 898, 1229
AjnI CCWGG 1 cut(s) 409
AjuI GAANNNNNNNTTGG 4 cut(s) 293, 325, 726, 758
Alw26I GTCTC 3 cut(s) 41, 1112, 1262
AlwI GGATC 2 cut(s) 166, 596
Ama87I CYCGRG 1 cut(s) 839
ApeKI GCWGC 1 cut(s) 1134
ApoI RAATTY 1 cut(s) 307
ArsI GACNNNNNNTTYG 2 cut(s) 332, 364
AseI ATTAAT 1 cut(s) 429
AspS9I GGNCC 2 cut(s) 266, 518
AsuHPI GGTGA 3 cut(s) 425, 474, 1196
AsuII TTCGAA 3 cut(s) 17, 671, 684
AvaI CYCGRG 1 cut(s) 839
AvaII GGWCC 2 cut(s) 266, 518
BbsI GAAGAC 1 cut(s) 800
BbvI GCAGC 1 cut(s) 1121
BccI CCATC 3 cut(s) 439, 443, 1004
BceAI ACGGC 1 cut(s) 1096
BciT130I CCWGG 1 cut(s) 411
BclI TGATCA 1 cut(s) 652
BcoDI GTCTC 3 cut(s) 41, 1112, 1262
BfaI CTAG 3 cut(s) 908, 948, 1076
BglI GCCNNNNNGGC 1 cut(s) 559
BisI GCNGC 1 cut(s) 1135
BlpI GCTNAGC 1 cut(s) 324
BlsI GCNGC 1 cut(s) 1136
Bme1390I CCNGG 1 cut(s) 411
Bme18I GGWCC 2 cut(s) 266, 518
BmeT110I CYCGRG 1 cut(s) 839
BmgT120I GGNCC 2 cut(s) 266, 518
BmrFI CCNGG 1 cut(s) 411
BmsI GCATC 4 cut(s) 31, 103, 110, 861
BpiI GAAGAC 1 cut(s) 800
Bpu1102I GCTNAGC 1 cut(s) 324
Bpu14I TTCGAA 3 cut(s) 17, 671, 684
BpuEI CTTGAG 3 cut(s) 133, 149, 1040
BsaBI GATNNNNATC 1 cut(s) 600
BsaI GGTCTC 1 cut(s) 1262
BsaJI CCNNGG 3 cut(s) 154, 695, 838
BsaWI WCCGGW 1 cut(s) 64
Bsc4I CCNNNNNNNGG 1 cut(s) 527
Bse118I RCCGGY 1 cut(s) 553
Bse1I ACTGG 1 cut(s) 256
Bse3DI GCAATG 1 cut(s) 40
Bse8I GATNNNNATC 1 cut(s) 600
BseBI CCWGG 1 cut(s) 411
BseDI CCNNGG 3 cut(s) 154, 695, 838
BseGI GGATG 4 cut(s) 76, 454, 655, 859
BseJI GATNNNNATC 1 cut(s) 600
BseLI CCNNNNNNNGG 1 cut(s) 527
BseMI GCAATG 1 cut(s) 40
BseMII CTCAG 2 cut(s) 102, 597
BseNI ACTGG 1 cut(s) 256
BseRI GAGGAG 5 cut(s) 51, 587, 740, 743, 1001
BseXI GCAGC 1 cut(s) 1121
Bsh1236I CGCG 1 cut(s) 697
BsiHKCI CYCGRG 1 cut(s) 839
BsiSI CCGG 3 cut(s) 46, 65, 554
BslI CCNNNNNNNGG 1 cut(s) 527
BsmAI GTCTC 3 cut(s) 41, 1112, 1262
BsmI GAATGC 1 cut(s) 874
Bso31I GGTCTC 1 cut(s) 1262
BsoBI CYCGRG 1 cut(s) 839
Bsp119I TTCGAA 3 cut(s) 17, 671, 684
Bsp1407I TGTACA 1 cut(s) 73
Bsp143I GATC 5 cut(s) 158, 479, 601, 609, 652
Bsp1720I GCTNAGC 1 cut(s) 324
BspACI CCGC 3 cut(s) 209, 695, 697
BspCNI CTCAG 2 cut(s) 101, 598
BspFNI CGCG 1 cut(s) 697
BspPI GGATC 2 cut(s) 166, 596
BspT104I TTCGAA 3 cut(s) 17, 671, 684
BspTNI GGTCTC 1 cut(s) 1262
BsrDI GCAATG 1 cut(s) 40
BsrFI RCCGGY 1 cut(s) 553
BsrGI TGTACA 1 cut(s) 73
BsrI ACTGG 1 cut(s) 256
BssAI RCCGGY 1 cut(s) 553
BssECI CCNNGG 3 cut(s) 154, 695, 838
BssMI GATC 5 cut(s) 158, 479, 601, 609, 652
BssT1I CCWWGG 1 cut(s) 154
Bst2UI CCWGG 1 cut(s) 411
BstAUI TGTACA 1 cut(s) 73
BstBI TTCGAA 3 cut(s) 17, 671, 684
BstC8I GCNNGC 1 cut(s) 321
BstDEI CTNAG 5 cut(s) 88, 140, 324, 606, 779
BstDSI CCRYGG 1 cut(s) 695
BstENI CCTNNNNNAGG 1 cut(s) 525
BstF5I GGATG 4 cut(s) 76, 454, 655, 859
BstFNI CGCG 1 cut(s) 697
BstKTI GATC 5 cut(s) 161, 482, 604, 612, 655
BstMAI GTCTC 3 cut(s) 41, 1112, 1262
BstMBI GATC 5 cut(s) 158, 479, 601, 609, 652
BstMWI GCNNNNNNNGC 4 cut(s) 28, 325, 559, 1024
BstNI CCWGG 1 cut(s) 411
BstNSI RCATGY 2 cut(s) 1125, 1236
BstSCI CCNGG 1 cut(s) 409
BstUI CGCG 1 cut(s) 697
BstV1I GCAGC 1 cut(s) 1121
BstV2I GAAGAC 1 cut(s) 800
BstX2I RGATCY 1 cut(s) 158
BstYI RGATCY 1 cut(s) 158
BtgI CCRYGG 1 cut(s) 695
BtgZI GCGATG 1 cut(s) 87
BtsCI GGATG 4 cut(s) 76, 454, 655, 859
BtsIMutI CAGTG 1 cut(s) 96
Cac8I GCNNGC 1 cut(s) 321
Cfr10I RCCGGY 1 cut(s) 553
Cfr13I GGNCC 2 cut(s) 266, 518
Cfr42I CCGCGG 1 cut(s) 698
Csp6I GTAC 3 cut(s) 74, 383, 1144
CviAII CATG 4 cut(s) 130, 491, 1122, 1233
CviQI GTAC 3 cut(s) 74, 383, 1144
DdeI CTNAG 5 cut(s) 88, 140, 324, 606, 779
DpnI GATC 5 cut(s) 160, 481, 603, 611, 654
DpnII GATC 5 cut(s) 158, 479, 601, 609, 652
DraIII CACNNNGTG 2 cut(s) 91, 133
EciI GGCGGA 1 cut(s) 224
Eco130I CCWWGG 1 cut(s) 154
Eco31I GGTCTC 1 cut(s) 1262
Eco47I GGWCC 2 cut(s) 266, 518
Eco57I CTGAAG 1 cut(s) 135
Eco88I CYCGRG 1 cut(s) 839
EcoNI CCTNNNNNAGG 1 cut(s) 525
EcoRII CCWGG 1 cut(s) 409
EcoT14I CCWWGG 1 cut(s) 154
EcoT22I ATGCAT 1 cut(s) 876
ErhI CCWWGG 1 cut(s) 154
FaeI CATG 4 cut(s) 133, 494, 1125, 1236
FalI AAGNNNNNCTT 4 cut(s) 312, 344, 781, 813
FatI CATG 4 cut(s) 129, 490, 1121, 1232
FbaI TGATCA 1 cut(s) 652
Fnu4HI GCNGC 1 cut(s) 1135
FokI GGATG 4 cut(s) 83, 461, 642, 866
Fsp4HI GCNGC 1 cut(s) 1135
FspBI CTAG 3 cut(s) 908, 948, 1076
GluI GCNGC 1 cut(s) 1135
HapII CCGG 3 cut(s) 46, 65, 554
Hin1II CATG 4 cut(s) 133, 494, 1125, 1236
HindIII AAGCTT 5 cut(s) 224, 326, 1016, 1025, 1086
HinfI GANTC 4 cut(s) 176, 239, 469, 991
HpaII CCGG 3 cut(s) 46, 65, 554
HphI GGTGA 3 cut(s) 425, 474, 1196
Hpy166II GTNNAC 1 cut(s) 1144
Hpy188I TCNGA 7 cut(s) 115, 270, 281, 292, 652, 712, 996
Hpy188III TCNNGA 6 cut(s) 455, 605, 638, 841, 1076, 1238
Hpy8I GTNNAC 1 cut(s) 1144
HpyAV CCTTC 5 cut(s) 578, 657, 892, 957, 1175
HpyCH4V TGCA 4 cut(s) 94, 319, 874, 1137
HpyF10VI GCNNNNNNNGC 4 cut(s) 28, 325, 559, 1024
HpyF3I CTNAG 5 cut(s) 88, 140, 324, 606, 779
Hsp92II CATG 4 cut(s) 133, 494, 1125, 1236
Ksp22I TGATCA 1 cut(s) 652
KspI CCGCGG 1 cut(s) 698
Kzo9I GATC 5 cut(s) 158, 479, 601, 609, 652
LmnI GCTCC 3 cut(s) 901, 980, 1131
Lsp1109I GCAGC 1 cut(s) 1121
LweI GCATC 4 cut(s) 31, 103, 110, 861
MaeI CTAG 3 cut(s) 908, 948, 1076
MaeIII GTNAC 3 cut(s) 83, 125, 400
MalI GATC 5 cut(s) 160, 481, 603, 611, 654
MboI GATC 5 cut(s) 158, 479, 601, 609, 652
MflI RGATCY 1 cut(s) 158
MluCI AATT 4 cut(s) 307, 314, 686, 703
MlyI GAGTC 1 cut(s) 478
Mph1103I ATGCAT 1 cut(s) 876
MseI TTAA 6 cut(s) 429, 495, 549, 921, 1001, 1203
MspA1I CMGCKG 1 cut(s) 697
MspI CCGG 3 cut(s) 46, 65, 554
MspR9I CCNGG 1 cut(s) 411
Mva1269I GAATGC 1 cut(s) 874
MvaI CCWGG 1 cut(s) 411
MvnI CGCG 1 cut(s) 697
MwoI GCNNNNNNNGC 4 cut(s) 28, 325, 559, 1024
NdeII GATC 5 cut(s) 158, 479, 601, 609, 652
NlaIII CATG 4 cut(s) 133, 494, 1125, 1236
NmuCI GTSAC 2 cut(s) 83, 125
NsiI ATGCAT 1 cut(s) 876
NspI RCATGY 2 cut(s) 1125, 1236
NspV TTCGAA 3 cut(s) 17, 671, 684
PciI ACATGT 2 cut(s) 1121, 1232
PctI GAATGC 1 cut(s) 874
PfeI GAWTC 3 cut(s) 176, 239, 991
PkrI GCNGC 1 cut(s) 1136
PleI GAGTC 1 cut(s) 477
PpsI GAGTC 1 cut(s) 477
PscI ACATGT 2 cut(s) 1121, 1232
PshBI ATTAAT 1 cut(s) 429
Psp6I CCWGG 1 cut(s) 409
PspGI CCWGG 1 cut(s) 409
PspPI GGNCC 2 cut(s) 266, 518
PsuI RGATCY 1 cut(s) 158
RsaI GTAC 3 cut(s) 75, 384, 1145
RsaNI GTAC 3 cut(s) 74, 383, 1144
SacII CCGCGG 1 cut(s) 698
SaqAI TTAA 6 cut(s) 429, 495, 549, 921, 1001, 1203
SatI GCNGC 1 cut(s) 1135
Sau3AI GATC 5 cut(s) 158, 479, 601, 609, 652
Sau96I GGNCC 2 cut(s) 266, 518
SchI GAGTC 1 cut(s) 478
ScrFI CCNGG 1 cut(s) 411
SfaNI GCATC 4 cut(s) 31, 103, 110, 861
Sfr303I CCGCGG 1 cut(s) 698
SfuI TTCGAA 3 cut(s) 17, 671, 684
SgrBI CCGCGG 1 cut(s) 698
SinI GGWCC 2 cut(s) 266, 518
SmlI CTYRAG 3 cut(s) 148, 164, 1019
SmoI CTYRAG 3 cut(s) 148, 164, 1019
Sse9I AATT 4 cut(s) 307, 314, 686, 703
SsiI CCGC 3 cut(s) 209, 695, 697
SspMI CTAG 3 cut(s) 908, 948, 1076
StyD4I CCNGG 1 cut(s) 409
StyI CCWWGG 1 cut(s) 154
TaqI TCGA 5 cut(s) 17, 305, 671, 684, 869
TasI AATT 4 cut(s) 307, 314, 686, 703
TatI WGTACW 2 cut(s) 73, 1143
TfiI GAWTC 3 cut(s) 176, 239, 991
Tru1I TTAA 6 cut(s) 429, 495, 549, 921, 1001, 1203
Tru9I TTAA 6 cut(s) 429, 495, 549, 921, 1001, 1203
TscAI CASTG 1 cut(s) 96
TseFI GTSAC 2 cut(s) 83, 125
TseI GCWGC 1 cut(s) 1134
Tsp45I GTSAC 2 cut(s) 83, 125
TspDTI ATGAA 6 cut(s) 374, 816, 1164, 1170, 1194, 1209
TspGWI ACGGA 1 cut(s) 648
TspRI CASTG 1 cut(s) 96
VpaK11BI GGWCC 2 cut(s) 266, 518
VspI ATTAAT 1 cut(s) 429
XagI CCTNNNNNAGG 1 cut(s) 525
XapI RAATTY 1 cut(s) 307
XbaI TCTAGA 1 cut(s) 1075
XceI RCATGY 2 cut(s) 1125, 1236
XcmI CCANNNNNNNNNTGG 1 cut(s) 1067
XspI CTAG 3 cut(s) 908, 948, 1076
Zsp2I ATGCAT 1 cut(s) 876
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.