FvH4_6g48990

Glutaredoxin

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb6
OG0012964
Physical Location & Seq
Reverse (-)
36786725 .. 36788152
1428 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_6g48990.t1

Sequence Viewer

Length: 1428 bp
ATGGGTTGCGCAAGCTCGAAGAAGTCTCCGCGGTGCCGCCACTGCCACAACAACTATTCTTCTCCGGTCACGCGGCGGAGCTACTCAATGCATGTTCATCATCCACCTCAGAACAGAGGCGATAGCTACCATGTCGTTGCGCTCACCTCCTCCACCTTGGGATCTCTCAGCAACAATAAGATCGAGTACGAGTTCAAGACAATTGTCAACGACAATAAGGATCATATCCACAAGGTGATGGAGAAGGAGAACGAGAATGTGAATGTGAATGAAAACAATAAGGATTTTTCGATGGGATTAATTGAGGCTAAGACGTGGTCCAAAATGATCAACCAGAAGATTCCCAAGATTATACCGAAAACGCCGACGAGAACGCCGCCGGGAGAGCCGGAGATGATCGATGCTTGGGAGTTGATGGAGGGTCTTGAAGATATAAGTCCCCTGAGGAATTCAGGTCATCATCTTCGGAGCTTTTCTTTTGACGTTATTAAAAGTCCATGTCCTGTTCCCGTTACAGGTTGTGTTGATCGTCCCAAGTCAAGGTTCCAAGAAAATGGTGCTGCCTCTCCTAAGCCTATGTGGCTTCAATTGGCTGATTACGAGAATAATTTGAATTCTTCCAATGCTGGGATTCCCGATTTTGATCCGGAGGTCATTTCCGGATTTAGAAAGTCTTTCAAAGAGCTCAAGAAAGATGATCCATTTCATTTTCAAGATGGAGAGGAGCCCAATGAGGATATCTCCTTTCATTTTGATCATAGAAAAGAAGAGCTCGATGAGGATGATTTCAAGGATAAAGAAGATGAGCTTCAGGAGGATGATTCTTTTCATTTCTCTGATGAAAAATCTTGTGTCATTTCGGATTTCAATTGTCAAGTGCCTTATGGTAAGGCAAAGGATATAGAGAAAGTGGTGTTGTACTTCACTAGTCTTAGAGGGGTGCGCAAGACTTACGAGGATTGTTGCCATGTGAGAGTGATTCTAAAAGGCATAGGTGTTCGAGTTGATGAGCGAGATGTTTCGATGCATTCAGGATTCAAGGAGGAGCTGAAAGAGCTAGTGAAAGGTGGGTGTGGTGGAATTTCTTTGCCTAAAGTGTTTGTGGGGGAGAAATACATTGGTGGAGCTGAAGAGATTCGGCAAATGCACGAAGATGGGAAGCTCGAGAAGTTGCTTGAATCTTGTGAGAAGTTGAATGATGTTGGTGGAGATGGTGGTGGAGTTTGTGAGGCTTGTGGGGATATAAGGTTTGTGCCATGTGAGACATGTTCCGGTAGCTGTAAAATTTACTATGAAGATGATCATGATCCAGACGAAGAACTTGAGGGCCAAGAGGAAGAAGAAGCAATGGAGGGTGAGTGTGGATTCCAACGATGCCCAGATTGTAATGAAAATGGCCTAACACGTTGCCCCATTTGTTGCTATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005623 GO:0005886 GO:0016020 GO:0044464 GO:0071944
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Glutaredoxin

Protein Analysis

476

Amino Acids

53.78

Weight (kDa)

5.02

Isoelectric Point (pI)

48.44

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Glutaredoxin PF00462 305 - 373 1.6e-10 Glutaredoxin
GRXCR1-2_C PF23733 409 - 474 4.8e-20 GRXCR1/2, C-terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0012964)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G28850 AT5G39865
fragaria_vesca FvH4_6g48990
malus_domestica MD09G1049100.v1.1 MD17G1049100.v1.1
prunus_persica Prupe.3G269700_v2.0.a1
pyrus_communis pycom111g04010 pycom17g04410
rosa_chinensis RchiOBHm_Chr2g0168831
rosa_laevigata RLG00000021810
rosa_multiflora Rmu_ssc0000393.1_g000006
rosa_roxburghii Rroxscaffold_2G00082640
rosa_rugosa Rorug02G0535600
rosa_samantha Rh2AG606600 Rh2BG619400 Rh2CG588000 Rh2DG630000
rosa_wichuraiana Rw2G050280

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 2 cut(s) 10, 944
AccB1I GGYRCC 1 cut(s) 33
AccII CGCG 2 cut(s) 31, 73
AccIII TCCGGA 2 cut(s) 646, 659
AciI CCGC 6 cut(s) 29, 31, 37, 73, 76, 377
AclWI GGATC 5 cut(s) 169, 228, 638, 692, 1301
AcsI RAATTY 4 cut(s) 448, 613, 1080, 1284
AcuI CTGAAG 2 cut(s) 794, 1149
AdeI CACNNNGTG 1 cut(s) 235
AfaI GTAC 2 cut(s) 188, 920
AfiI CCNNNNNNNGG 3 cut(s) 515, 540, 627
AflIII ACRYGT 2 cut(s) 1265, 1403
AhlI ACTAGT 1 cut(s) 926
AjiI CACGTC 1 cut(s) 315
AjuI GAANNNNNNNTTGG 2 cut(s) 527, 559
Alw21I GWGCWC 2 cut(s) 687, 774
Alw26I GTCTC 2 cut(s) 30, 1256
AlwI GGATC 5 cut(s) 169, 228, 638, 692, 1301
Ama87I CYCGRG 1 cut(s) 1163
Aor13HI TCCGGA 2 cut(s) 646, 659
AoxI GGCC 2 cut(s) 1327, 1396
ApeKI GCWGC 1 cut(s) 560
ApoI RAATTY 4 cut(s) 448, 613, 1080, 1284
AseI ATTAAT 1 cut(s) 299
Asp700I GAANNNNTTC 1 cut(s) 1134
AspLEI GCGC 3 cut(s) 11, 142, 945
AspS9I GGNCC 2 cut(s) 318, 1327
AsuC2I CCSGG 1 cut(s) 381
AsuHPI GGTGA 3 cut(s) 136, 247, 1367
AvaI CYCGRG 1 cut(s) 1163
AvaII GGWCC 1 cut(s) 318
AxyI CCTNAGG 1 cut(s) 443
BanI GGYRCC 1 cut(s) 33
BanII GRGCYC 3 cut(s) 687, 729, 774
Bbv12I GWGCWC 2 cut(s) 687, 774
BbvI GCAGC 1 cut(s) 547
BccI CCATC 6 cut(s) 232, 286, 409, 710, 1148, 1205
BclI TGATCA 3 cut(s) 327, 754, 1300
BcnI CCSGG 1 cut(s) 381
BcoDI GTCTC 2 cut(s) 30, 1256
BcuI ACTAGT 1 cut(s) 926
BfaI CTAG 2 cut(s) 927, 1058
BglI GCCNNNNNGGC 1 cut(s) 580
BisI GCNGC 4 cut(s) 37, 74, 377, 561
BlsI GCNGC 4 cut(s) 38, 75, 378, 562
Bme1390I CCNGG 1 cut(s) 381
Bme18I GGWCC 1 cut(s) 318
BmeT110I CYCGRG 1 cut(s) 1163
BmgBI CACGTC 1 cut(s) 315
BmgT120I GGNCC 2 cut(s) 318, 1327
BmiI GGNNCC 3 cut(s) 35, 545, 726
BmrFI CCNGG 1 cut(s) 381
BmsI GCATC 3 cut(s) 391, 1014, 1364
BoxI GACNNNNGTC 1 cut(s) 203
BplI GAGNNNNNCTC 2 cut(s) 725, 757
Bpu10I CCTNAGC 1 cut(s) 570
BpuEI CTTGAG 2 cut(s) 671, 1343
BpuMI CCSGG 1 cut(s) 381
Bsa29I ATCGAT 1 cut(s) 399
BsaBI GATNNNNATC 2 cut(s) 642, 1305
BsaJI CCNNGG 2 cut(s) 29, 156
BsaWI WCCGGW 4 cut(s) 64, 646, 659, 1271
BsaXI ACNNNNNCTCC 2 cut(s) 1343, 1373
Bsc4I CCNNNNNNNGG 3 cut(s) 515, 540, 627
Bse21I CCTNAGG 1 cut(s) 443
Bse3DI GCAATG 1 cut(s) 1353
Bse8I GATNNNNATC 2 cut(s) 642, 1305
BseAI TCCGGA 2 cut(s) 646, 659
BseCI ATCGAT 1 cut(s) 399
BseDI CCNNGG 2 cut(s) 29, 156
BseGI GGATG 3 cut(s) 100, 787, 823
BseJI GATNNNNATC 2 cut(s) 642, 1305
BseLI CCNNNNNNNGG 3 cut(s) 515, 540, 627
BseMI GCAATG 1 cut(s) 1353
BseMII CTCAG 3 cut(s) 122, 181, 434
BseRI GAGGAG 3 cut(s) 139, 737, 1058
BseXI GCAGC 1 cut(s) 547
BseYI CCCAGC 1 cut(s) 626
Bsh1236I CGCG 2 cut(s) 31, 73
BshFI GGCC 2 cut(s) 1329, 1398
BshNI GGYRCC 1 cut(s) 33
BshVI ATCGAT 1 cut(s) 399
BsiHKAI GWGCWC 2 cut(s) 687, 774
BsiHKCI CYCGRG 1 cut(s) 1163
BsiSI CCGG 6 cut(s) 65, 380, 389, 647, 660, 1272
BslFI GGGAC 2 cut(s) 423, 516
BslI CCNNNNNNNGG 3 cut(s) 515, 540, 627
BsmAI GTCTC 2 cut(s) 30, 1256
BsmFI GGGAC 2 cut(s) 423, 516
BsmI GAATGC 1 cut(s) 1027
BsnI GGCC 2 cut(s) 1329, 1398
BsoBI CYCGRG 1 cut(s) 1163
Bsp1286I GDGCHC 3 cut(s) 687, 729, 774
Bsp13I TCCGGA 2 cut(s) 646, 659
BspACI CCGC 6 cut(s) 29, 31, 37, 73, 76, 377
BspANI GGCC 2 cut(s) 1329, 1398
BspCNI CTCAG 3 cut(s) 121, 180, 435
BspDI ATCGAT 1 cut(s) 399
BspEI TCCGGA 2 cut(s) 646, 659
BspFNI CGCG 2 cut(s) 31, 73
BspHI TCATGA 1 cut(s) 1303
BspLI GGNNCC 3 cut(s) 35, 545, 726
BspPI GGATC 5 cut(s) 169, 228, 638, 692, 1301
BspQI GCTCTTC 1 cut(s) 762
BspT107I GGYRCC 1 cut(s) 33
BsrDI GCAATG 1 cut(s) 1353
BssECI CCNNGG 2 cut(s) 29, 156
BssT1I CCWWGG 1 cut(s) 156
Bst6I CTCTTC 2 cut(s) 762, 1125
BstC8I GCNNGC 1 cut(s) 13
BstDEI CTNAG 6 cut(s) 108, 167, 309, 443, 570, 932
BstDSI CCRYGG 1 cut(s) 29
BstF5I GGATG 3 cut(s) 100, 787, 823
BstFNI CGCG 2 cut(s) 31, 73
BstHHI GCGC 3 cut(s) 11, 142, 945
BstMAI GTCTC 2 cut(s) 30, 1256
BstMWI GCNNNNNNNGC 4 cut(s) 42, 385, 580, 1054
BstNSI RCATGY 2 cut(s) 95, 1269
BstPAI GACNNNNGTC 1 cut(s) 203
BstSCI CCNGG 1 cut(s) 379
BstUI CGCG 2 cut(s) 31, 73
BstV1I GCAGC 1 cut(s) 547
BstX2I RGATCY 1 cut(s) 161
BstXI CCANNNNNNTGG 1 cut(s) 554
BstYI RGATCY 1 cut(s) 161
Bsu15I ATCGAT 1 cut(s) 399
Bsu36I CCTNAGG 1 cut(s) 443
BsuRI GGCC 2 cut(s) 1329, 1398
BsuTUI ATCGAT 1 cut(s) 399
BtgI CCRYGG 1 cut(s) 29
BtrI CACGTC 1 cut(s) 315
BtsCI GGATG 3 cut(s) 100, 787, 823
BtsI GCAGTG 1 cut(s) 40
BtsIMutI CAGTG 1 cut(s) 40
Cac8I GCNNGC 1 cut(s) 13
CciI TCATGA 1 cut(s) 1303
CfoI GCGC 3 cut(s) 11, 142, 945
Cfr13I GGNCC 2 cut(s) 318, 1327
Cfr42I CCGCGG 1 cut(s) 32
ClaI ATCGAT 1 cut(s) 399
Csp6I GTAC 2 cut(s) 187, 919
CviAII CATG 7 cut(s) 92, 131, 498, 968, 1257, 1266, 1304
CviQI GTAC 2 cut(s) 187, 919
DdeI CTNAG 6 cut(s) 108, 167, 309, 443, 570, 932
DraIII CACNNNGTG 1 cut(s) 235
Eam1104I CTCTTC 2 cut(s) 762, 1125
EarI CTCTTC 2 cut(s) 762, 1125
EciI GGCGGA 1 cut(s) 91
Ecl136II GAGCTC 2 cut(s) 685, 772
Eco130I CCWWGG 1 cut(s) 156
Eco24I GRGCYC 3 cut(s) 687, 729, 774
Eco32I GATATC 1 cut(s) 739
Eco47I GGWCC 1 cut(s) 318
Eco53kI GAGCTC 2 cut(s) 685, 772
Eco57I CTGAAG 2 cut(s) 794, 1149
Eco81I CCTNAGG 1 cut(s) 443
Eco88I CYCGRG 1 cut(s) 1163
EcoICRI GAGCTC 2 cut(s) 685, 772
EcoRI GAATTC 2 cut(s) 448, 613
EcoRV GATATC 1 cut(s) 739
EcoT14I CCWWGG 1 cut(s) 156
EcoT22I ATGCAT 2 cut(s) 93, 1029
EcoT38I GRGCYC 3 cut(s) 687, 729, 774
ErhI CCWWGG 1 cut(s) 156
FaeI CATG 7 cut(s) 95, 134, 501, 971, 1260, 1269, 1307
FalI AAGNNNNNCTT 2 cut(s) 792, 824
FaqI GGGAC 2 cut(s) 423, 516
FatI CATG 7 cut(s) 91, 130, 497, 967, 1256, 1265, 1303
FbaI TGATCA 3 cut(s) 327, 754, 1300
Fnu4HI GCNGC 4 cut(s) 37, 74, 377, 561
FokI GGATG 3 cut(s) 87, 794, 830
FriOI GRGCYC 3 cut(s) 687, 729, 774
Fsp4HI GCNGC 4 cut(s) 37, 74, 377, 561
FspBI CTAG 2 cut(s) 927, 1058
FspI TGCGCA 2 cut(s) 10, 944
GlaI GCGC 3 cut(s) 10, 141, 944
GluI GCNGC 4 cut(s) 37, 74, 377, 561
GsaI CCCAGC 1 cut(s) 630
HaeIII GGCC 2 cut(s) 1329, 1398
HapII CCGG 6 cut(s) 65, 380, 389, 647, 660, 1272
HhaI GCGC 3 cut(s) 11, 142, 945
Hin1II CATG 7 cut(s) 95, 134, 501, 971, 1260, 1269, 1307
Hin6I GCGC 3 cut(s) 9, 140, 943
HinP1I GCGC 3 cut(s) 9, 140, 943
HincII GTYRAC 1 cut(s) 208
HindII GTYRAC 1 cut(s) 208
HinfI GANTC 8 cut(s) 340, 631, 821, 979, 1035, 1135, 1178, 1365
HpaII CCGG 6 cut(s) 65, 380, 389, 647, 660, 1272
HphI GGTGA 3 cut(s) 136, 247, 1367
Hpy166II GTNNAC 1 cut(s) 208
Hpy188I TCNGA 4 cut(s) 111, 468, 838, 862
Hpy8I GTNNAC 1 cut(s) 208
Hpy99I CGWCG 1 cut(s) 370
HpyAV CCTTC 1 cut(s) 238
HpyCH4IV ACGT 3 cut(s) 314, 483, 1405
HpyCH4V TGCA 3 cut(s) 91, 1027, 1147
HpyF10VI GCNNNNNNNGC 4 cut(s) 42, 385, 580, 1054
HpyF3I CTNAG 6 cut(s) 108, 167, 309, 443, 570, 932
HpySE526I ACGT 3 cut(s) 314, 483, 1405
Hsp92II CATG 7 cut(s) 95, 134, 501, 971, 1260, 1269, 1307
HspAI GCGC 3 cut(s) 9, 140, 943
Kpn2I TCCGGA 2 cut(s) 646, 659
Ksp22I TGATCA 3 cut(s) 327, 754, 1300
KspI CCGCGG 1 cut(s) 32
LguI GCTCTTC 1 cut(s) 762
LmnI GCTCC 5 cut(s) 78, 468, 724, 1045, 1124
Lsp1109I GCAGC 1 cut(s) 547
LweI GCATC 3 cut(s) 391, 1014, 1364
MaeI CTAG 2 cut(s) 927, 1058
MaeII ACGT 3 cut(s) 314, 483, 1405
MaeIII GTNAC 2 cut(s) 67, 511
MfeI CAATTG 3 cut(s) 201, 587, 868
MflI RGATCY 1 cut(s) 161
MhlI GDGCHC 3 cut(s) 687, 729, 774
MluCI AATT 9 cut(s) 201, 300, 448, 587, 607, 613, 868, 1080, 1284
MmeI TCCRAC 1 cut(s) 1393
Mph1103I ATGCAT 2 cut(s) 93, 1029
MroI TCCGGA 2 cut(s) 646, 659
MroXI GAANNNNTTC 1 cut(s) 1134
MseI TTAA 3 cut(s) 299, 489, 1426
MslI CAYNNNNRTG 1 cut(s) 1152
MspA1I CMGCKG 1 cut(s) 31
MspI CCGG 6 cut(s) 65, 380, 389, 647, 660, 1272
MspR9I CCNGG 1 cut(s) 381
MunI CAATTG 3 cut(s) 201, 587, 868
Mva1269I GAATGC 1 cut(s) 1027
MvnI CGCG 2 cut(s) 31, 73
MwoI GCNNNNNNNGC 4 cut(s) 42, 385, 580, 1054
NciI CCSGG 1 cut(s) 381
NlaIII CATG 7 cut(s) 95, 134, 501, 971, 1260, 1269, 1307
NlaIV GGNNCC 3 cut(s) 35, 545, 726
NmuCI GTSAC 1 cut(s) 67
NsbI TGCGCA 2 cut(s) 10, 944
NsiI ATGCAT 2 cut(s) 93, 1029
NspI RCATGY 2 cut(s) 95, 1269
PaeR7I CTCGAG 1 cut(s) 1163
PagI TCATGA 1 cut(s) 1303
PciI ACATGT 1 cut(s) 1265
PciSI GCTCTTC 1 cut(s) 762
PctI GAATGC 1 cut(s) 1027
PdmI GAANNNNTTC 1 cut(s) 1134
PfeI GAWTC 8 cut(s) 340, 631, 821, 979, 1035, 1135, 1178, 1365
PflFI GACNNNGTC 1 cut(s) 316
PkrI GCNGC 4 cut(s) 38, 75, 378, 562
PscI ACATGT 1 cut(s) 1265
PshAI GACNNNNGTC 1 cut(s) 203
PshBI ATTAAT 1 cut(s) 299
Psp124BI GAGCTC 2 cut(s) 687, 774
PspFI CCCAGC 1 cut(s) 626
PspN4I GGNNCC 3 cut(s) 35, 545, 726
PspPI GGNCC 2 cut(s) 318, 1327
PsuI RGATCY 1 cut(s) 161
PsyI GACNNNGTC 1 cut(s) 316
RsaI GTAC 2 cut(s) 188, 920
RsaNI GTAC 2 cut(s) 187, 919
RseI CAYNNNNRTG 1 cut(s) 1152
SacI GAGCTC 2 cut(s) 687, 774
SacII CCGCGG 1 cut(s) 32
SapI GCTCTTC 1 cut(s) 762
SaqAI TTAA 3 cut(s) 299, 489, 1426
SatI GCNGC 4 cut(s) 37, 74, 377, 561
Sau96I GGNCC 2 cut(s) 318, 1327
ScrFI CCNGG 1 cut(s) 381
SduI GDGCHC 3 cut(s) 687, 729, 774
SfaNI GCATC 3 cut(s) 391, 1014, 1364
Sfr274I CTCGAG 1 cut(s) 1163
Sfr303I CCGCGG 1 cut(s) 32
SgrBI CCGCGG 1 cut(s) 32
SinI GGWCC 1 cut(s) 318
SlaI CTCGAG 1 cut(s) 1163
SmiMI CAYNNNNRTG 1 cut(s) 1152
SmlI CTYRAG 3 cut(s) 686, 1163, 1322
SmoI CTYRAG 3 cut(s) 686, 1163, 1322
SpeI ACTAGT 1 cut(s) 926
Sse9I AATT 9 cut(s) 201, 300, 448, 587, 607, 613, 868, 1080, 1284
SsiI CCGC 6 cut(s) 29, 31, 37, 73, 76, 377
SspMI CTAG 2 cut(s) 927, 1058
SstI GAGCTC 2 cut(s) 687, 774
StyD4I CCNGG 1 cut(s) 379
StyI CCWWGG 1 cut(s) 156
TaiI ACGT 3 cut(s) 317, 486, 1408
TaqI TCGA 8 cut(s) 17, 183, 290, 399, 774, 1000, 1022, 1164
TasI AATT 9 cut(s) 201, 300, 448, 587, 607, 613, 868, 1080, 1284
TatI WGTACW 1 cut(s) 918
TauI GCSGC 3 cut(s) 39, 76, 379
TfiI GAWTC 8 cut(s) 340, 631, 821, 979, 1035, 1135, 1178, 1365
Tru1I TTAA 3 cut(s) 299, 489, 1426
Tru9I TTAA 3 cut(s) 299, 489, 1426
TscAI CASTG 1 cut(s) 47
TseFI GTSAC 1 cut(s) 67
TseI GCWGC 1 cut(s) 560
Tsp45I GTSAC 1 cut(s) 67
TspDTI ATGAA 8 cut(s) 86, 285, 695, 737, 818, 855, 1308, 1404
TspRI CASTG 1 cut(s) 47
Tth111I GACNNNGTC 1 cut(s) 316
VpaK11BI GGWCC 1 cut(s) 318
VspI ATTAAT 1 cut(s) 299
XapI RAATTY 4 cut(s) 448, 613, 1080, 1284
XceI RCATGY 2 cut(s) 95, 1269
XhoI CTCGAG 1 cut(s) 1163
XmnI GAANNNNTTC 1 cut(s) 1134
XspI CTAG 2 cut(s) 927, 1058
Zsp2I ATGCAT 2 cut(s) 93, 1029
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.