Rh2AG606600

Glutaredoxin

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2A
OG0012964
Physical Location & Seq
Reverse (-)
83433261 .. 83435717
2457 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2AG606600.1

Sequence Viewer

Length: 1473 bp
ATGGGTTGCGCAAGCTCGAAGAAATCTCCGCGGTGCCGCCACTGCCACAACCACTATTCTTCTCCGATTGGCCGGAGCTACTCAATGCATGTTCATCATCCACCTCAGAACAGAGGCGACAGCTACCATGTTGTTGCCCTCACCTCCTCCACCTTGGGATCTCTCAACAACAATAATCGGCTCGAGTACGAGTTCAAGACGATTGTCAATGACAATAAGGATCACATCCACAAGGTGAAGGAGAAGAAGGAGAATGTCAATGGAAACAATAAGGAATTTTCGATGGGTCTAATTGAGGCTAAGACGTGGTCCAATATGATCAACCAGAAGATTCCCAAGATTATACCCAAGACGCCGACGAGAACGCCGCCGGGGGAGCCGGAGATGATCAATGCTTGGGAGTTGATGGAGGGCCTTGAAGACATAAGTCCTCTGAGATCTTCAGGTCTTCATCTTCGGAGCTTTTCTTTTGATGTTATCAAAAGTCCATGCCCTGTTCCCGTTTCAGGGGGTGTTGATCGTCCCAAGTCAAGGTTTCAAGAAAATGGTGCGGCCTCGCCTAAGCCTCTGTGGCTTCAACTGGCTGATTGTGAGAATTTCAATTCCAATGTTGGGATTCCACAATTTGATCCGGAGGTCCTTTCCGGATTTAGAAAATCTTTCGAAGAGCTCGAGGAAGATGATCCATTTCATTTTAAAGATGGAGAAGAGCTCAATGAGGATATTTCTTTTCATTTTAGAGATAGAAAAGAAGAGCTCAATGAGGATGATTCTTTTCATTTCAAGGATAGAGAAGAAGATCTCAAGGCGGATGATTCTTTTCATTTCAAGGACAGAGAAGAAGAGCTCAAGGCGGATGATTCTTTTCGTTTCTCGGATGAAAAGGAGGTAAATAGCTTCATTTCGGATTACAAATGTGAAGTGCCTTTTGGTAAGGCGAAGGATAGAGAGAAAGTGGTGTTGTACTTCACTAGTCTTAGAGGGGTGCGGAAGACTTATGAGGATTGTTGCCATGTGAGGGTGATTCTAAAAGGCATAGGTGTTCGGGTTGATGAGCGAGATGTTTCGATGCATTCGGGGTTCAAGGAGGAGTTGAAAGAGCTAGTGAAAGATGGGTGTAGTGGAGTTTCTTTGCCTAAAGTGTTTGTGGGGGAAAAGTACATTGGTGGAGCTGAAGAGATACGGCAAATGCATGAAGACGGGAAGCTCGAGAAGTTGCTTGAATCTTGTGAAAAGTTGAGTGATGGCGGTGTAGGTGTTGGTAGTGTTTGTGAGGCTTGTGGGGATATAAGGTTTGTGCCATGTGAGACATGTTCCGGGAGCTGCAAAATTTACTATGAAGACGATGATCATGATCGAGACGAAGAACATGAAGGCGAAGAAGAAGAAGCAAAAGAGTGTGAGTGTGGATTCCAACGCTGCCCAGATTGTAATGAAAATGGTCTAATACGTTGCCCCATTTGTTGCTATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005623 GO:0005886 GO:0016020 GO:0044464 GO:0071944
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Glutaredoxin

Protein Analysis

490

Amino Acids

55.84

Weight (kDa)

5.15

Isoelectric Point (pI)

46.65

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Glutaredoxin PF00462 320 - 388 2.1e-10 Glutaredoxin
GRXCR1-2_C PF23733 424 - 489 1.2e-19 GRXCR1/2, C-terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0012964)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G28850 AT5G39865
fragaria_vesca FvH4_6g48990
malus_domestica MD09G1049100.v1.1 MD17G1049100.v1.1
prunus_persica Prupe.3G269700_v2.0.a1
pyrus_communis pycom111g04010 pycom17g04410
rosa_chinensis RchiOBHm_Chr2g0168831
rosa_laevigata RLG00000021810
rosa_multiflora Rmu_ssc0000393.1_g000006
rosa_roxburghii Rroxscaffold_2G00082640
rosa_rugosa Rorug02G0535600
rosa_samantha Rh2AG606600 Rh2BG619400 Rh2CG588000 Rh2DG630000
rosa_wichuraiana Rw2G050280

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 10
AccB1I GGYRCC 1 cut(s) 33
AccII CGCG 1 cut(s) 31
AccIII TCCGGA 2 cut(s) 631, 644
AciI CCGC 9 cut(s) 29, 31, 37, 368, 551, 809, 854, 988, 1248
AclWI GGATC 4 cut(s) 166, 228, 623, 677
AcoI YGGCCR 1 cut(s) 70
AcsI RAATTY 3 cut(s) 275, 595, 1329
AcuI CTGAAG 2 cut(s) 426, 1194
AcyI GRCGYC 1 cut(s) 353
AdeI CACNNNGTG 1 cut(s) 235
AfaI GTAC 3 cut(s) 188, 965, 1160
AfiI CCNNNNNNNGG 5 cut(s) 506, 507, 531, 612, 1018
AflIII ACRYGT 1 cut(s) 1310
AhlI ACTAGT 1 cut(s) 971
AjiI CACGTC 1 cut(s) 306
AjuI GAANNNNNNNTTGG 4 cut(s) 912, 944, 1146, 1178
Alw21I GWGCWC 4 cut(s) 672, 714, 759, 849
Alw26I GTCTC 2 cut(s) 1301, 1353
AlwI GGATC 4 cut(s) 166, 228, 623, 677
Ama87I CYCGRG 3 cut(s) 182, 671, 1208
Aor13HI TCCGGA 2 cut(s) 631, 644
AoxI GGCC 3 cut(s) 70, 412, 552
ApeKI GCWGC 2 cut(s) 1323, 1419
ApoI RAATTY 3 cut(s) 275, 595, 1329
AspLEI GCGC 1 cut(s) 11
AspS9I GGNCC 3 cut(s) 309, 412, 637
AsuC2I CCSGG 2 cut(s) 372, 1318
AsuHPI GGTGA 3 cut(s) 133, 247, 1033
AsuII TTCGAA 1 cut(s) 663
AvaI CYCGRG 3 cut(s) 182, 671, 1208
AvaII GGWCC 2 cut(s) 309, 637
BanI GGYRCC 1 cut(s) 33
BanII GRGCYC 4 cut(s) 672, 714, 759, 849
BbsI GAAGAC 5 cut(s) 426, 440, 998, 1203, 1347
Bbv12I GWGCWC 4 cut(s) 672, 714, 759, 849
BbvI GCAGC 2 cut(s) 1310, 1406
BccI CCATC 5 cut(s) 277, 400, 695, 1106, 1238
BceAI ACGGC 1 cut(s) 1199
BclI TGATCA 3 cut(s) 318, 387, 1348
BcnI CCSGG 2 cut(s) 372, 1318
BcoDI GTCTC 2 cut(s) 1301, 1353
BcuI ACTAGT 1 cut(s) 971
BfaI CTAG 2 cut(s) 972, 1103
BglI GCCNNNNNGGC 1 cut(s) 571
BglII AGATCT 2 cut(s) 437, 799
BisI GCNGC 5 cut(s) 37, 368, 552, 1324, 1420
BlsI GCNGC 5 cut(s) 38, 369, 553, 1325, 1421
Bme1390I CCNGG 2 cut(s) 372, 1318
Bme18I GGWCC 2 cut(s) 309, 637
BmeT110I CYCGRG 3 cut(s) 182, 671, 1208
BmgBI CACGTC 1 cut(s) 306
BmgT120I GGNCC 3 cut(s) 309, 412, 637
BmiI GGNNCC 2 cut(s) 35, 378
BmrFI CCNGG 2 cut(s) 372, 1318
BmsI GCATC 1 cut(s) 1059
BoxI GACNNNNGTC 2 cut(s) 203, 426
BpiI GAAGAC 5 cut(s) 426, 440, 998, 1203, 1347
BplI GAGNNNNNCTC 2 cut(s) 696, 728
Bpu10I CCTNAGC 1 cut(s) 561
Bpu14I TTCGAA 1 cut(s) 663
BpuEI CTTGAG 2 cut(s) 788, 833
BpuMI CCSGG 2 cut(s) 372, 1318
BsaBI GATNNNNATC 1 cut(s) 1353
BsaHI GRCGYC 1 cut(s) 353
BsaJI CCNNGG 3 cut(s) 29, 153, 371
BsaWI WCCGGW 2 cut(s) 631, 644
Bsc4I CCNNNNNNNGG 5 cut(s) 506, 507, 531, 612, 1018
Bse1I ACTGG 1 cut(s) 585
Bse8I GATNNNNATC 1 cut(s) 1353
BseAI TCCGGA 2 cut(s) 631, 644
BseDI CCNNGG 3 cut(s) 29, 153, 371
BseGI GGATG 6 cut(s) 97, 225, 772, 817, 862, 883
BseJI GATNNNNATC 1 cut(s) 1353
BseLI CCNNNNNNNGG 5 cut(s) 506, 507, 531, 612, 1018
BseMII CTCAG 2 cut(s) 119, 425
BseNI ACTGG 1 cut(s) 585
BseRI GAGGAG 2 cut(s) 136, 1103
BseXI GCAGC 2 cut(s) 1310, 1406
Bsh1236I CGCG 1 cut(s) 31
BshFI GGCC 3 cut(s) 72, 414, 554
BshNI GGYRCC 1 cut(s) 33
BsiHKAI GWGCWC 4 cut(s) 672, 714, 759, 849
BsiHKCI CYCGRG 3 cut(s) 182, 671, 1208
BsiSI CCGG 6 cut(s) 73, 371, 380, 632, 645, 1317
BslFI GGGAC 1 cut(s) 507
BslI CCNNNNNNNGG 5 cut(s) 506, 507, 531, 612, 1018
BsmAI GTCTC 2 cut(s) 1301, 1353
BsmBI CGTCTC 1 cut(s) 1353
BsmFI GGGAC 1 cut(s) 507
BsmI GAATGC 1 cut(s) 1072
BsnI GGCC 3 cut(s) 72, 414, 554
BsoBI CYCGRG 3 cut(s) 182, 671, 1208
Bsp119I TTCGAA 1 cut(s) 663
Bsp1286I GDGCHC 4 cut(s) 672, 714, 759, 849
Bsp13I TCCGGA 2 cut(s) 631, 644
BspACI CCGC 9 cut(s) 29, 31, 37, 368, 551, 809, 854, 988, 1248
BspANI GGCC 3 cut(s) 72, 414, 554
BspCNI CTCAG 2 cut(s) 118, 426
BspEI TCCGGA 2 cut(s) 631, 644
BspFNI CGCG 1 cut(s) 31
BspHI TCATGA 1 cut(s) 1351
BspLI GGNNCC 2 cut(s) 35, 378
BspPI GGATC 4 cut(s) 166, 228, 623, 677
BspQI GCTCTTC 4 cut(s) 660, 702, 747, 837
BspT104I TTCGAA 1 cut(s) 663
BspT107I GGYRCC 1 cut(s) 33
BsrI ACTGG 1 cut(s) 585
BssECI CCNNGG 3 cut(s) 29, 153, 371
BssNI GRCGYC 1 cut(s) 353
BssT1I CCWWGG 1 cut(s) 153
Bst6I CTCTTC 5 cut(s) 660, 702, 747, 837, 1170
BstACI GRCGYC 1 cut(s) 353
BstBI TTCGAA 1 cut(s) 663
BstC8I GCNNGC 1 cut(s) 13
BstDEI CTNAG 5 cut(s) 105, 300, 434, 561, 977
BstDSI CCRYGG 1 cut(s) 29
BstF5I GGATG 6 cut(s) 97, 225, 772, 817, 862, 883
BstFNI CGCG 1 cut(s) 31
BstHHI GCGC 1 cut(s) 11
BstMAI GTCTC 2 cut(s) 1301, 1353
BstMWI GCNNNNNNNGC 3 cut(s) 42, 376, 571
BstNSI RCATGY 2 cut(s) 92, 1314
BstPAI GACNNNNGTC 2 cut(s) 203, 426
BstSCI CCNGG 2 cut(s) 370, 1316
BstUI CGCG 1 cut(s) 31
BstV1I GCAGC 2 cut(s) 1310, 1406
BstV2I GAAGAC 5 cut(s) 426, 440, 998, 1203, 1347
BstX2I RGATCY 3 cut(s) 158, 437, 799
BstYI RGATCY 3 cut(s) 158, 437, 799
BsuRI GGCC 3 cut(s) 72, 414, 554
BtgI CCRYGG 1 cut(s) 29
BtrI CACGTC 1 cut(s) 306
BtsCI GGATG 6 cut(s) 97, 225, 772, 817, 862, 883
BtsI GCAGTG 1 cut(s) 40
BtsIMutI CAGTG 1 cut(s) 40
Cac8I GCNNGC 1 cut(s) 13
CciI TCATGA 1 cut(s) 1351
CfoI GCGC 1 cut(s) 11
Cfr13I GGNCC 3 cut(s) 309, 412, 637
Cfr42I CCGCGG 1 cut(s) 32
CseI GACGC 1 cut(s) 361
Csp6I GTAC 3 cut(s) 187, 964, 1159
CviAII CATG 9 cut(s) 89, 128, 489, 1013, 1193, 1302, 1311, 1352, 1370
CviQI GTAC 3 cut(s) 187, 964, 1159
DdeI CTNAG 5 cut(s) 105, 300, 434, 561, 977
DraI TTTAAA 1 cut(s) 697
DraIII CACNNNGTG 1 cut(s) 235
EaeI YGGCCR 1 cut(s) 70
Eam1104I CTCTTC 5 cut(s) 660, 702, 747, 837, 1170
EarI CTCTTC 5 cut(s) 660, 702, 747, 837, 1170
EciI GGCGGA 2 cut(s) 824, 869
Ecl136II GAGCTC 4 cut(s) 670, 712, 757, 847
Eco130I CCWWGG 1 cut(s) 153
Eco24I GRGCYC 4 cut(s) 672, 714, 759, 849
Eco47I GGWCC 2 cut(s) 309, 637
Eco53kI GAGCTC 4 cut(s) 670, 712, 757, 847
Eco57I CTGAAG 2 cut(s) 426, 1194
Eco88I CYCGRG 3 cut(s) 182, 671, 1208
EcoICRI GAGCTC 4 cut(s) 670, 712, 757, 847
EcoO109I RGGNCCY 2 cut(s) 412, 637
EcoT14I CCWWGG 1 cut(s) 153
EcoT22I ATGCAT 3 cut(s) 90, 1074, 1194
EcoT38I GRGCYC 4 cut(s) 672, 714, 759, 849
ErhI CCWWGG 1 cut(s) 153
Esp3I CGTCTC 1 cut(s) 1353
FaeI CATG 9 cut(s) 92, 131, 492, 1016, 1196, 1305, 1314, 1355, 1373
FaqI GGGAC 1 cut(s) 507
FatI CATG 9 cut(s) 88, 127, 488, 1012, 1192, 1301, 1310, 1351, 1369
FbaI TGATCA 3 cut(s) 318, 387, 1348
Fnu4HI GCNGC 5 cut(s) 37, 368, 552, 1324, 1420
FokI GGATG 6 cut(s) 84, 212, 779, 824, 869, 890
FriOI GRGCYC 4 cut(s) 672, 714, 759, 849
Fsp4HI GCNGC 5 cut(s) 37, 368, 552, 1324, 1420
FspBI CTAG 2 cut(s) 972, 1103
FspI TGCGCA 1 cut(s) 10
GlaI GCGC 1 cut(s) 10
GluI GCNGC 5 cut(s) 37, 368, 552, 1324, 1420
HaeIII GGCC 3 cut(s) 72, 414, 554
HapII CCGG 6 cut(s) 73, 371, 380, 632, 645, 1317
HgaI GACGC 1 cut(s) 361
HhaI GCGC 1 cut(s) 11
Hin1I GRCGYC 1 cut(s) 353
Hin1II CATG 9 cut(s) 92, 131, 492, 1016, 1196, 1305, 1314, 1355, 1373
Hin6I GCGC 1 cut(s) 9
HinP1I GCGC 1 cut(s) 9
HinfI GANTC 8 cut(s) 331, 616, 770, 815, 860, 1024, 1223, 1410
HpaII CCGG 6 cut(s) 73, 371, 380, 632, 645, 1317
HphI GGTGA 3 cut(s) 133, 247, 1033
Hpy188I TCNGA 6 cut(s) 66, 108, 435, 459, 877, 907
Hpy188III TCNNGA 7 cut(s) 196, 539, 632, 645, 1210, 1352, 1358
Hpy99I CGWCG 1 cut(s) 361
HpyAV CCTTC 4 cut(s) 232, 241, 934, 1367
HpyCH4IV ACGT 2 cut(s) 305, 1450
HpyCH4V TGCA 4 cut(s) 88, 1072, 1192, 1326
HpyF10VI GCNNNNNNNGC 3 cut(s) 42, 376, 571
HpyF3I CTNAG 5 cut(s) 105, 300, 434, 561, 977
HpySE526I ACGT 2 cut(s) 305, 1450
Hsp92I GRCGYC 1 cut(s) 353
Hsp92II CATG 9 cut(s) 92, 131, 492, 1016, 1196, 1305, 1314, 1355, 1373
HspAI GCGC 1 cut(s) 9
Kpn2I TCCGGA 2 cut(s) 631, 644
Ksp22I TGATCA 3 cut(s) 318, 387, 1348
KspI CCGCGG 1 cut(s) 32
LguI GCTCTTC 4 cut(s) 660, 702, 747, 837
LmnI GCTCC 5 cut(s) 75, 376, 459, 1169, 1320
Lsp1109I GCAGC 2 cut(s) 1310, 1406
LweI GCATC 1 cut(s) 1059
MaeI CTAG 2 cut(s) 972, 1103
MaeII ACGT 2 cut(s) 305, 1450
MflI RGATCY 3 cut(s) 158, 437, 799
MhlI GDGCHC 4 cut(s) 672, 714, 759, 849
MluCI AATT 6 cut(s) 275, 291, 595, 601, 623, 1329
MmeI TCCRAC 1 cut(s) 1438
Mph1103I ATGCAT 3 cut(s) 90, 1074, 1194
MroI TCCGGA 2 cut(s) 631, 644
MseI TTAA 1 cut(s) 696
MspA1I CMGCKG 1 cut(s) 31
MspI CCGG 6 cut(s) 73, 371, 380, 632, 645, 1317
MspR9I CCNGG 2 cut(s) 372, 1318
Mva1269I GAATGC 1 cut(s) 1072
MvnI CGCG 1 cut(s) 31
MwoI GCNNNNNNNGC 3 cut(s) 42, 376, 571
NciI CCSGG 2 cut(s) 372, 1318
NlaIII CATG 9 cut(s) 92, 131, 492, 1016, 1196, 1305, 1314, 1355, 1373
NlaIV GGNNCC 2 cut(s) 35, 378
NsbI TGCGCA 1 cut(s) 10
NsiI ATGCAT 3 cut(s) 90, 1074, 1194
NspI RCATGY 2 cut(s) 92, 1314
NspV TTCGAA 1 cut(s) 663
PaeR7I CTCGAG 3 cut(s) 182, 671, 1208
PagI TCATGA 1 cut(s) 1351
PciI ACATGT 1 cut(s) 1310
PciSI GCTCTTC 4 cut(s) 660, 702, 747, 837
PcsI WCGNNNNNNNCGW 2 cut(s) 669, 1206
PctI GAATGC 1 cut(s) 1072
PfeI GAWTC 8 cut(s) 331, 616, 770, 815, 860, 1024, 1223, 1410
PflFI GACNNNGTC 1 cut(s) 307
PfoI TCCNGGA 1 cut(s) 1316
PkrI GCNGC 5 cut(s) 38, 369, 553, 1325, 1421
PpuMI RGGWCCY 1 cut(s) 637
PscI ACATGT 1 cut(s) 1310
PshAI GACNNNNGTC 2 cut(s) 203, 426
Psp124BI GAGCTC 4 cut(s) 672, 714, 759, 849
Psp5II RGGWCCY 1 cut(s) 637
PspN4I GGNNCC 2 cut(s) 35, 378
PspPI GGNCC 3 cut(s) 309, 412, 637
PspPPI RGGWCCY 1 cut(s) 637
PspXI VCTCGAGB 2 cut(s) 182, 671
PsuI RGATCY 3 cut(s) 158, 437, 799
PsyI GACNNNGTC 1 cut(s) 307
RsaI GTAC 3 cut(s) 188, 965, 1160
RsaNI GTAC 3 cut(s) 187, 964, 1159
SacI GAGCTC 4 cut(s) 672, 714, 759, 849
SacII CCGCGG 1 cut(s) 32
SapI GCTCTTC 4 cut(s) 660, 702, 747, 837
SaqAI TTAA 1 cut(s) 696
SatI GCNGC 5 cut(s) 37, 368, 552, 1324, 1420
Sau96I GGNCC 3 cut(s) 309, 412, 637
ScrFI CCNGG 2 cut(s) 372, 1318
SduI GDGCHC 4 cut(s) 672, 714, 759, 849
SfaNI GCATC 1 cut(s) 1059
Sfr274I CTCGAG 3 cut(s) 182, 671, 1208
Sfr303I CCGCGG 1 cut(s) 32
SfuI TTCGAA 1 cut(s) 663
SgrBI CCGCGG 1 cut(s) 32
SinI GGWCC 2 cut(s) 309, 637
SlaI CTCGAG 3 cut(s) 182, 671, 1208
SmlI CTYRAG 5 cut(s) 182, 671, 803, 848, 1208
SmoI CTYRAG 5 cut(s) 182, 671, 803, 848, 1208
SpeI ACTAGT 1 cut(s) 971
Sse9I AATT 6 cut(s) 275, 291, 595, 601, 623, 1329
SsiI CCGC 9 cut(s) 29, 31, 37, 368, 551, 809, 854, 988, 1248
SspMI CTAG 2 cut(s) 972, 1103
SstI GAGCTC 4 cut(s) 672, 714, 759, 849
StyD4I CCNGG 2 cut(s) 370, 1316
StyI CCWWGG 1 cut(s) 153
TaiI ACGT 2 cut(s) 308, 1453
TaqI TCGA 8 cut(s) 17, 183, 281, 663, 672, 1067, 1209, 1357
TasI AATT 6 cut(s) 275, 291, 595, 601, 623, 1329
TatI WGTACW 2 cut(s) 963, 1158
TauI GCSGC 3 cut(s) 39, 370, 554
TfiI GAWTC 8 cut(s) 331, 616, 770, 815, 860, 1024, 1223, 1410
Tru1I TTAA 1 cut(s) 696
Tru9I TTAA 1 cut(s) 696
TscAI CASTG 1 cut(s) 47
TseI GCWGC 2 cut(s) 1323, 1419
TspRI CASTG 1 cut(s) 47
Tth111I GACNNNGTC 1 cut(s) 307
VpaK11BI GGWCC 2 cut(s) 309, 637
XapI RAATTY 3 cut(s) 275, 595, 1329
XceI RCATGY 2 cut(s) 92, 1314
XhoI CTCGAG 3 cut(s) 182, 671, 1208
XspI CTAG 2 cut(s) 972, 1103
Zsp2I ATGCAT 3 cut(s) 90, 1074, 1194
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.