AT5G39865

glutaredoxin family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
5
OG0012964
Physical Location & Seq
Reverse (-)
15965301 .. 15967186
1886 bp
Loading structure...
UTR
Exon/CDS
Intron
AT5G39865.1

Sequence Viewer

Length: 1173 bp
ATGGGTTGTGCGAGCTCGAAGAATCGAAACCGTTGCCGTAATTGCAAAGGAGGATTATCGCCGGTGATTGTGCCACGAAGCTATTCAATGCACGTTCATCATCCAGCACAACACACCGGCGATAGTTATCACACGGTGGCTCTCACTTCCTCCACAATCGGATCTCTTAGTCTTTGTGATTCTTCTCTCAGGCATTTTCACAAACACTTGGAAGACTCTTTTTACAAGCAACGCGTTTCCGACCAAATGGGTGAGGAGACGCTAATCTCCGGTAATGGGTTTCTTCACGGCGATGAAGAGAAGATGAATTTGGATTTGCAAGCTAAGGTTATCGAAGCTAAGGTGTGGTCAAGTACGATAAACGAGAAAATCCCTAAGATTGTGGCTAAAACTCCAATAGTGACGCCTCCTGGAGAGCCAGAGACGATCAATACATGGGAATTGATGGAAGGTCTTGAAGATGTTAGTCCTTTACGATCACCGAATCACTTGAGGAGCTTCTCCTTTGATTTTGTTCGTATCCAACCTAGTCATGATCATGATCATGATGTTGCTGTTTCCTTTGATCTTCCTAAATCAAGGTTTCATGAGAATGTTAAGTCCAGTTGCAGAGTTGATGATTTGGATCCACCTGATATAGTTTCAAGGTTCAAAAGAAAGACTTTAGGTAAAGAAAGAGTGGTACTTTACTTCACAAGCCTTAGAGGTATAAGGAAAACATATGAAGACTGCTGCAATATCCGGATAATACTGAAAAGCTTAGGAATTCGGATCGATGAGCGCGATGTATCGATGCATTCGGGTTTCAAAGATGAGCTGAAGAAGCTCTTGGAGGGTAAATTCAACAACGGCGTTGGAATAACCCTGCCTAGAGTTTTCTTGGGGAACAAGTATCTTGGCGGAGTAGAGGAGATTAAGAAGTTGAATGAAAATGGGGAACTTGAAAAGCTGATAAAAGACTGTGAAATGGTTGAAGATGGCTCACCGGGTTTTGGTAACGAATGTGAGGCTTGTGGAGATGTTCGGTTTGTGCCGTGTGAGACATGTTCAGGCAGCTGCAAACTTTACCACGAAGGCGAAGAAGAAGACGAAGGAGTTACAGAGTATGGATTTCAAAGATGTCCATATTGTAATGAGAATGGATTGATCAGATGTCATGTGTGTTGTGAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005623 GO:0005886 GO:0016020 GO:0044464 GO:0071944
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Glutaredoxin

Protein Analysis

390

Amino Acids

43.94

Weight (kDa)

5.96

Isoelectric Point (pI)

44.72

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Glutaredoxin PF00462 228 - 298 1.1e-09 Glutaredoxin
GRXCR1-2_C PF23733 335 - 389 1.5e-19 GRXCR1/2, C-terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0012964)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G28850 AT5G39865
fragaria_vesca FvH4_6g48990
malus_domestica MD09G1049100.v1.1 MD17G1049100.v1.1
prunus_persica Prupe.3G269700_v2.0.a1
pyrus_communis pycom111g04010 pycom17g04410
rosa_chinensis RchiOBHm_Chr2g0168831
rosa_laevigata RLG00000021810
rosa_multiflora Rmu_ssc0000393.1_g000006
rosa_roxburghii Rroxscaffold_2G00082640
rosa_rugosa Rorug02G0535600
rosa_samantha Rh2AG606600 Rh2BG619400 Rh2CG588000 Rh2DG630000
rosa_wichuraiana Rw2G050280

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 2 cut(s) 234, 783
AccIII TCCGGA 1 cut(s) 741
AciI CCGC 1 cut(s) 900
AclWI GGATC 4 cut(s) 169, 620, 633, 779
AcsI RAATTY 3 cut(s) 307, 765, 839
AcuI CTGAAG 1 cut(s) 839
AcyI GRCGYC 1 cut(s) 404
AdeI CACNNNGTG 1 cut(s) 136
AfaI GTAC 2 cut(s) 355, 684
AfiI CCNNNNNNNGG 2 cut(s) 276, 992
AflIII ACRYGT 2 cut(s) 232, 1043
AjnI CCWGG 1 cut(s) 409
AjuI GAANNNNNNNTTGG 4 cut(s) 293, 325, 812, 844
Alw21I GWGCWC 1 cut(s) 17
Alw26I GTCTC 3 cut(s) 251, 416, 1034
AlwI GGATC 4 cut(s) 169, 620, 633, 779
Aor13HI TCCGGA 1 cut(s) 741
ApeKI GCWGC 3 cut(s) 732, 1053, 1056
ApoI RAATTY 3 cut(s) 307, 765, 839
Asp700I GAANNNNTTC 1 cut(s) 82
AspLEI GCGC 1 cut(s) 783
AsuC2I CCSGG 1 cut(s) 987
AsuHPI GGTGA 4 cut(s) 76, 263, 471, 975
BamHI GGATCC 1 cut(s) 625
BanII GRGCYC 1 cut(s) 17
BbsI GAAGAC 3 cut(s) 219, 732, 1092
Bbv12I GWGCWC 1 cut(s) 17
BbvI GCAGC 3 cut(s) 719, 1043, 1065
BccI CCATC 2 cut(s) 439, 971
BceAI ACGGC 4 cut(s) 21, 304, 865, 1018
BcgI CGANNNNNNTGC 2 cut(s) 15, 49
BciT130I CCWGG 1 cut(s) 411
BciVI GTATCC 1 cut(s) 530
BclI TGATCA 3 cut(s) 535, 541, 1146
BcnI CCSGG 1 cut(s) 987
BcoDI GTCTC 3 cut(s) 251, 416, 1034
BfaI CTAG 2 cut(s) 528, 870
BfuI GTATCC 1 cut(s) 530
BisI GCNGC 3 cut(s) 733, 1054, 1057
BlsI GCNGC 3 cut(s) 734, 1055, 1058
Bme1390I CCNGG 2 cut(s) 411, 987
BmiI GGNNCC 1 cut(s) 627
BmrFI CCNGG 2 cut(s) 411, 987
BmsI GCATC 1 cut(s) 783
BpiI GAAGAC 3 cut(s) 219, 732, 1092
BpmI CTGGAG 1 cut(s) 432
Bpu10I CCTNAGC 3 cut(s) 324, 339, 760
BpuEI CTTGAG 1 cut(s) 511
BpuMI CCSGG 1 cut(s) 987
Bsa29I ATCGAT 2 cut(s) 774, 791
BsaBI GATNNNNATC 3 cut(s) 126, 540, 624
BsaHI GRCGYC 1 cut(s) 404
BsaWI WCCGGW 2 cut(s) 269, 741
Bsc4I CCNNNNNNNGG 2 cut(s) 276, 992
Bse118I RCCGGY 2 cut(s) 61, 116
Bse1I ACTGG 1 cut(s) 603
Bse8I GATNNNNATC 3 cut(s) 126, 540, 624
BseAI TCCGGA 1 cut(s) 741
BseBI CCWGG 1 cut(s) 411
BseCI ATCGAT 2 cut(s) 774, 791
BseGI GGATG 1 cut(s) 100
BseJI GATNNNNATC 3 cut(s) 126, 540, 624
BseLI CCNNNNNNNGG 2 cut(s) 276, 992
BseMII CTCAG 1 cut(s) 202
BseNI ACTGG 1 cut(s) 603
BseRI GAGGAG 3 cut(s) 269, 508, 923
BseXI GCAGC 3 cut(s) 719, 1043, 1065
Bsh1236I CGCG 2 cut(s) 234, 783
BshVI ATCGAT 2 cut(s) 774, 791
BsiHKAI GWGCWC 1 cut(s) 17
BsiSI CCGG 5 cut(s) 62, 117, 270, 742, 986
BslI CCNNNNNNNGG 2 cut(s) 276, 992
BsmAI GTCTC 3 cut(s) 251, 416, 1034
BsmBI CGTCTC 2 cut(s) 251, 416
BsmI GAATGC 1 cut(s) 796
Bsp1286I GDGCHC 1 cut(s) 17
Bsp13I TCCGGA 1 cut(s) 741
Bsp143I GATC 9 cut(s) 161, 426, 476, 535, 541, 565, 625, 771, 1146
BspACI CCGC 1 cut(s) 900
BspCNI CTCAG 1 cut(s) 201
BspDI ATCGAT 2 cut(s) 774, 791
BspEI TCCGGA 1 cut(s) 741
BspFNI CGCG 2 cut(s) 234, 783
BspHI TCATGA 4 cut(s) 532, 538, 544, 586
BspLI GGNNCC 1 cut(s) 627
BspPI GGATC 4 cut(s) 169, 620, 633, 779
BsrFI RCCGGY 2 cut(s) 61, 116
BsrI ACTGG 1 cut(s) 603
BssAI RCCGGY 2 cut(s) 61, 116
BssMI GATC 9 cut(s) 161, 426, 476, 535, 541, 565, 625, 771, 1146
BssNI GRCGYC 1 cut(s) 404
Bst2UI CCWGG 1 cut(s) 411
Bst4CI ACNGT 3 cut(s) 32, 136, 962
Bst6I CTCTTC 1 cut(s) 291
BstACI GRCGYC 1 cut(s) 404
BstC8I GCNNGC 2 cut(s) 13, 321
BstDEI CTNAG 7 cut(s) 167, 188, 324, 339, 375, 701, 760
BstF5I GGATG 1 cut(s) 100
BstFNI CGCG 2 cut(s) 234, 783
BstHHI GCGC 1 cut(s) 783
BstKTI GATC 9 cut(s) 164, 429, 479, 538, 544, 568, 628, 774, 1149
BstMAI GTCTC 3 cut(s) 251, 416, 1034
BstMBI GATC 9 cut(s) 161, 426, 476, 535, 541, 565, 625, 771, 1146
BstMWI GCNNNNNNNGC 2 cut(s) 42, 823
BstNI CCWGG 1 cut(s) 411
BstNSI RCATGY 1 cut(s) 1047
BstSCI CCNGG 2 cut(s) 409, 985
BstUI CGCG 2 cut(s) 234, 783
BstV1I GCAGC 3 cut(s) 719, 1043, 1065
BstV2I GAAGAC 3 cut(s) 219, 732, 1092
BstX2I RGATCY 2 cut(s) 161, 625
BstYI RGATCY 2 cut(s) 161, 625
Bsu15I ATCGAT 2 cut(s) 774, 791
BsuI GTATCC 1 cut(s) 530
BsuTUI ATCGAT 2 cut(s) 774, 791
BtgZI GCGATG 2 cut(s) 306, 798
BtsCI GGATG 1 cut(s) 100
Cac8I GCNNGC 2 cut(s) 13, 321
CciI TCATGA 4 cut(s) 532, 538, 544, 586
CfoI GCGC 1 cut(s) 783
Cfr10I RCCGGY 2 cut(s) 61, 116
ClaI ATCGAT 2 cut(s) 774, 791
CseI GACGC 2 cut(s) 268, 412
Csp6I GTAC 2 cut(s) 354, 683
CviAII CATG 7 cut(s) 435, 533, 539, 545, 587, 1044, 1157
CviQI GTAC 2 cut(s) 354, 683
DdeI CTNAG 7 cut(s) 167, 188, 324, 339, 375, 701, 760
DpnI GATC 9 cut(s) 163, 428, 478, 537, 543, 567, 627, 773, 1148
DpnII GATC 9 cut(s) 161, 426, 476, 535, 541, 565, 625, 771, 1146
DraIII CACNNNGTG 1 cut(s) 136
Eam1104I CTCTTC 1 cut(s) 291
EarI CTCTTC 1 cut(s) 291
EciI GGCGGA 1 cut(s) 915
Ecl136II GAGCTC 1 cut(s) 15
Eco24I GRGCYC 1 cut(s) 17
Eco53kI GAGCTC 1 cut(s) 15
Eco57I CTGAAG 1 cut(s) 839
EcoICRI GAGCTC 1 cut(s) 15
EcoRI GAATTC 1 cut(s) 765
EcoRII CCWGG 1 cut(s) 409
EcoT22I ATGCAT 1 cut(s) 798
EcoT38I GRGCYC 1 cut(s) 17
Esp3I CGTCTC 2 cut(s) 251, 416
FaeI CATG 7 cut(s) 438, 536, 542, 548, 590, 1047, 1160
FalI AAGNNNNNCTT 4 cut(s) 646, 678, 812, 844
FatI CATG 7 cut(s) 434, 532, 538, 544, 586, 1043, 1156
FauNDI CATATG 1 cut(s) 721
FbaI TGATCA 3 cut(s) 535, 541, 1146
Fnu4HI GCNGC 3 cut(s) 733, 1054, 1057
FokI GGATG 1 cut(s) 87
FriOI GRGCYC 1 cut(s) 17
Fsp4HI GCNGC 3 cut(s) 733, 1054, 1057
FspBI CTAG 2 cut(s) 528, 870
GlaI GCGC 1 cut(s) 782
GluI GCNGC 3 cut(s) 733, 1054, 1057
GsuI CTGGAG 1 cut(s) 432
HapII CCGG 5 cut(s) 62, 117, 270, 742, 986
HgaI GACGC 2 cut(s) 268, 412
HhaI GCGC 1 cut(s) 783
Hin1I GRCGYC 1 cut(s) 404
Hin1II CATG 7 cut(s) 438, 536, 542, 548, 590, 1047, 1160
Hin6I GCGC 1 cut(s) 781
HinP1I GCGC 1 cut(s) 781
HindIII AAGCTT 1 cut(s) 757
HinfI GANTC 4 cut(s) 22, 179, 215, 484
HpaII CCGG 5 cut(s) 62, 117, 270, 742, 986
HphI GGTGA 4 cut(s) 76, 263, 471, 975
Hpy188I TCNGA 4 cut(s) 161, 241, 771, 1151
Hpy188III TCNNGA 6 cut(s) 455, 533, 539, 545, 587, 742
HpyAV CCTTC 3 cut(s) 443, 1067, 1085
HpyCH4III ACNGT 3 cut(s) 32, 136, 962
HpyCH4IV ACGT 1 cut(s) 93
HpyCH4V TGCA 7 cut(s) 45, 91, 319, 609, 735, 796, 1059
HpyF10VI GCNNNNNNNGC 2 cut(s) 42, 823
HpyF3I CTNAG 7 cut(s) 167, 188, 324, 339, 375, 701, 760
HpySE526I ACGT 1 cut(s) 93
Hsp92I GRCGYC 1 cut(s) 404
Hsp92II CATG 7 cut(s) 438, 536, 542, 548, 590, 1047, 1160
HspAI GCGC 1 cut(s) 781
Kpn2I TCCGGA 1 cut(s) 741
Ksp22I TGATCA 3 cut(s) 535, 541, 1146
Kzo9I GATC 9 cut(s) 161, 426, 476, 535, 541, 565, 625, 771, 1146
LmnI GCTCC 1 cut(s) 495
Lsp1109I GCAGC 3 cut(s) 719, 1043, 1065
LweI GCATC 1 cut(s) 783
MaeI CTAG 2 cut(s) 528, 870
MaeII ACGT 1 cut(s) 93
MaeIII GTNAC 3 cut(s) 400, 995, 1096
MalI GATC 9 cut(s) 163, 428, 478, 537, 543, 567, 627, 773, 1148
MboI GATC 9 cut(s) 161, 426, 476, 535, 541, 565, 625, 771, 1146
MflI RGATCY 2 cut(s) 161, 625
MhlI GDGCHC 1 cut(s) 17
MluCI AATT 5 cut(s) 40, 307, 440, 765, 839
MluI ACGCGT 1 cut(s) 232
MlyI GAGTC 1 cut(s) 209
MmeI TCCRAC 3 cut(s) 264, 547, 835
MnlI CCTC 9 cut(s) 44, 160, 247, 417, 486, 698, 826, 901, 1000
Mph1103I ATGCAT 1 cut(s) 798
MroI TCCGGA 1 cut(s) 741
MroXI GAANNNNTTC 1 cut(s) 82
MseI TTAA 2 cut(s) 597, 915
MslI CAYNNNNRTG 4 cut(s) 291, 537, 543, 591
MspA1I CMGCKG 1 cut(s) 1056
MspI CCGG 5 cut(s) 62, 117, 270, 742, 986
MspR9I CCNGG 2 cut(s) 411, 987
Mva1269I GAATGC 1 cut(s) 796
MvaI CCWGG 1 cut(s) 411
MvnI CGCG 2 cut(s) 234, 783
MwoI GCNNNNNNNGC 2 cut(s) 42, 823
NciI CCSGG 1 cut(s) 987
NdeI CATATG 1 cut(s) 721
NdeII GATC 9 cut(s) 161, 426, 476, 535, 541, 565, 625, 771, 1146
NlaIII CATG 7 cut(s) 438, 536, 542, 548, 590, 1047, 1160
NlaIV GGNNCC 1 cut(s) 627
NmuCI GTSAC 1 cut(s) 400
NsiI ATGCAT 1 cut(s) 798
NspI RCATGY 1 cut(s) 1047
PagI TCATGA 4 cut(s) 532, 538, 544, 586
PciI ACATGT 1 cut(s) 1043
PcsI WCGNNNNNNNCGW 1 cut(s) 780
PctI GAATGC 1 cut(s) 796
PdmI GAANNNNTTC 1 cut(s) 82
PfeI GAWTC 3 cut(s) 22, 179, 484
PfoI TCCNGGA 1 cut(s) 409
PkrI GCNGC 3 cut(s) 734, 1055, 1058
PleI GAGTC 1 cut(s) 209
PpsI GAGTC 1 cut(s) 209
PscI ACATGT 1 cut(s) 1043
Psp124BI GAGCTC 1 cut(s) 17
Psp6I CCWGG 1 cut(s) 409
PspGI CCWGG 1 cut(s) 409
PspN4I GGNNCC 1 cut(s) 627
PsuI RGATCY 2 cut(s) 161, 625
PvuII CAGCTG 1 cut(s) 1056
RsaI GTAC 2 cut(s) 355, 684
RsaNI GTAC 2 cut(s) 354, 683
RseI CAYNNNNRTG 4 cut(s) 291, 537, 543, 591
SacI GAGCTC 1 cut(s) 17
SaqAI TTAA 2 cut(s) 597, 915
SatI GCNGC 3 cut(s) 733, 1054, 1057
Sau3AI GATC 9 cut(s) 161, 426, 476, 535, 541, 565, 625, 771, 1146
SchI GAGTC 1 cut(s) 209
ScrFI CCNGG 2 cut(s) 411, 987
SduI GDGCHC 1 cut(s) 17
SfaNI GCATC 1 cut(s) 783
SgrAI CRCCGGYG 2 cut(s) 61, 116
SmiMI CAYNNNNRTG 4 cut(s) 291, 537, 543, 591
SmlI CTYRAG 1 cut(s) 490
SmoI CTYRAG 1 cut(s) 490
Sse9I AATT 5 cut(s) 40, 307, 440, 765, 839
SsiI CCGC 1 cut(s) 900
SspMI CTAG 2 cut(s) 528, 870
SstI GAGCTC 1 cut(s) 17
StyD4I CCNGG 2 cut(s) 409, 985
TaaI ACNGT 3 cut(s) 32, 136, 962
TaiI ACGT 1 cut(s) 96
TaqI TCGA 5 cut(s) 17, 25, 333, 774, 791
TasI AATT 5 cut(s) 40, 307, 440, 765, 839
TfiI GAWTC 3 cut(s) 22, 179, 484
Tru1I TTAA 2 cut(s) 597, 915
Tru9I TTAA 2 cut(s) 597, 915
TseFI GTSAC 1 cut(s) 400
TseI GCWGC 3 cut(s) 732, 1053, 1056
Tsp45I GTSAC 1 cut(s) 400
TspDTI ATGAA 6 cut(s) 86, 309, 320, 575, 738, 942
XapI RAATTY 3 cut(s) 307, 765, 839
XceI RCATGY 1 cut(s) 1047
XmnI GAANNNNTTC 1 cut(s) 82
XspI CTAG 2 cut(s) 528, 870
Zsp2I ATGCAT 1 cut(s) 798
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.