Rw2G050280

Glutaredoxin

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr2
OG0012964
Physical Location & Seq
Reverse (-)
77905308 .. 77906797
1490 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw2G050280.1

Sequence Viewer

Length: 1440 bp
ATGGGTTGCGCAAGCTCGAAGAAATCTCCGCGGTGCCGCCACTGCCACAACCACTATTCTTCTCCGATTGGCCGGAGCTACTCAATGCATGTTCATCATCCACCTCAGAACAGAGGCGACAGCTACCATGTTGTTGCCCTCACCTCCTCCACCTTGGGATCTCTCAACAACAATAATCGGCTCGAGTACGAGTTCAAGACGATTGTCAATGACAATAAGGATCACATCCACAAGGTGAAGGAGAGGAAACTTGGGGAGGTGGAGAAGGAGAATGCCAATGGAAACAATAAGGAATTTTCGATGGGTCTAATTGAGGCTAAGACGTGGTCCAATATGATCAACCAGAAGATTCCCAAGATTATACCCAAGACGCCGACGAGAACGCCGCCGGGGGAGCCGGAGATGATCAATGCTTGGGAGTTGATGGAGGGCCTTGAAGACATTAGTCCTCTGAGATCTTCAGGTCTTCATCTTCGGAGCTTTTCTTTTGATGTTATCAAAAGTCCATGCCCTGTTCCCGTTTCAGGGGGTGTTGATCGTCCCAAGTCAAGGTTTCAAGAAAATGGTGCGGCCTCGCCTAAGCCTCTGTGGCTTCAACTGGCTGATTGTGAGAATTTCAATTCCAATGTTGGGATTCCACAATTTGATCCGGAGGTCCTTTCCGGATTTAGAAAATCTTTCGAAGAGCTCGAGGAAGATGATCCATTTCATTTTAAAGATGGAGAAGAGCTCAATGAGGATATTTCTTTTCATTTTAGAGATAGAAAAGAAGAGCTCAATGAGGATGATTCTTTTCATTTCAAGGATAGAGAAGAAGAGCTCAAGGAGGATGATTCTTTTCATTTCAAGGATAGAGAGGAAGAGCTCAAGGCGGATGATTCTTTTCGTTTCTCGGATGAAAAGGAGGTAAATTGCTTCATTTCGGATTACAAATGTGAAGTGCCTTTTGGTAAGGCGAAGGATAGAGAGAAAGTGGTGTTGTACTTCACTAGTCTTAGAGGGGTGCGGAAGACTTATGAGGATTGCTGCCATGTGAGGGTGATTCTAAAAGGCATAGGTGTTCGGGTTGATGAGCGAGATGTTTCGATGCATTCGGGGTTCAAGGAGGAGTTGAAAGAGCTAGTGAAAGATGGGTGTAGTGGAGTGTCTTTGCCTAAAGTGTTTGTGGGGGAAAAGTACATTGGTGGAGCTGAAGAGATACGGCAAATGCATGAAGACGGGAAGCTCGAGAATGTTTGTGAGGCTTGTGGGGATATAAGGTTTGTGCCATGTGAGACATGTTCCGGGAGCTGCAAAATTTACCATGAAGACGATGATCATGATCGAGACGAAGAACATGAAGGCGAAGAAGAAGAAGCAAAAGAGTGTGAGTGTGGATTCCAACGCTGCCCAGATTGTAATGAAAATGGTCTAATACGTTGCCCCATTTGTTGCTATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005623 GO:0005886 GO:0016020 GO:0044464 GO:0071944
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Glutaredoxin

Protein Analysis

479

Amino Acids

54.91

Weight (kDa)

5.15

Isoelectric Point (pI)

47.49

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Glutaredoxin PF00462 326 - 394 2e-10 Glutaredoxin
GRXCR1-2_C PF23733 413 - 478 1.5e-19 GRXCR1/2, C-terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0012964)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G28850 AT5G39865
fragaria_vesca FvH4_6g48990
malus_domestica MD09G1049100.v1.1 MD17G1049100.v1.1
prunus_persica Prupe.3G269700_v2.0.a1
pyrus_communis pycom111g04010 pycom17g04410
rosa_chinensis RchiOBHm_Chr2g0168831
rosa_laevigata RLG00000021810
rosa_multiflora Rmu_ssc0000393.1_g000006
rosa_roxburghii Rroxscaffold_2G00082640
rosa_rugosa Rorug02G0535600
rosa_samantha Rh2AG606600 Rh2BG619400 Rh2CG588000 Rh2DG630000
rosa_wichuraiana Rw2G050280

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 10
AccB1I GGYRCC 1 cut(s) 33
AccII CGCG 1 cut(s) 31
AccIII TCCGGA 2 cut(s) 649, 662
AciI CCGC 7 cut(s) 29, 31, 37, 386, 569, 872, 1006
AclWI GGATC 4 cut(s) 166, 228, 641, 695
AcoI YGGCCR 1 cut(s) 70
AcsI RAATTY 3 cut(s) 293, 613, 1296
AcuI CTGAAG 2 cut(s) 444, 1212
AcyI GRCGYC 1 cut(s) 371
AdeI CACNNNGTG 1 cut(s) 235
AfaI GTAC 3 cut(s) 188, 983, 1178
AfiI CCNNNNNNNGG 5 cut(s) 524, 525, 549, 630, 1036
AflIII ACRYGT 1 cut(s) 1277
AgsI TTSAA 9 cut(s) 196, 437, 557, 596, 619, 802, 847, 1102, 1114
AhlI ACTAGT 1 cut(s) 989
AjiI CACGTC 1 cut(s) 324
AjuI GAANNNNNNNTTGG 4 cut(s) 930, 962, 1164, 1196
Alw21I GWGCWC 5 cut(s) 690, 732, 777, 822, 867
Alw26I GTCTC 2 cut(s) 1268, 1320
AlwI GGATC 4 cut(s) 166, 228, 641, 695
Ama87I CYCGRG 3 cut(s) 182, 689, 1226
Aor13HI TCCGGA 2 cut(s) 649, 662
AoxI GGCC 3 cut(s) 70, 430, 570
ApeKI GCWGC 3 cut(s) 1026, 1290, 1386
ApoI RAATTY 3 cut(s) 293, 613, 1296
AspLEI GCGC 1 cut(s) 11
AspS9I GGNCC 3 cut(s) 327, 430, 655
AsuC2I CCSGG 2 cut(s) 390, 1285
AsuHPI GGTGA 3 cut(s) 133, 247, 1051
AsuII TTCGAA 1 cut(s) 681
AvaI CYCGRG 3 cut(s) 182, 689, 1226
AvaII GGWCC 2 cut(s) 327, 655
BanI GGYRCC 1 cut(s) 33
BanII GRGCYC 5 cut(s) 690, 732, 777, 822, 867
BbsI GAAGAC 5 cut(s) 444, 458, 1016, 1221, 1314
Bbv12I GWGCWC 5 cut(s) 690, 732, 777, 822, 867
BbvI GCAGC 3 cut(s) 1013, 1277, 1373
BccI CCATC 4 cut(s) 295, 418, 713, 1124
BceAI ACGGC 1 cut(s) 1217
BclI TGATCA 3 cut(s) 336, 405, 1315
BcnI CCSGG 2 cut(s) 390, 1285
BcoDI GTCTC 2 cut(s) 1268, 1320
BcuI ACTAGT 1 cut(s) 989
BfaI CTAG 2 cut(s) 990, 1121
BglI GCCNNNNNGGC 1 cut(s) 589
BglII AGATCT 1 cut(s) 455
BisI GCNGC 6 cut(s) 37, 386, 570, 1027, 1291, 1387
BlsI GCNGC 6 cut(s) 38, 387, 571, 1028, 1292, 1388
Bme1390I CCNGG 2 cut(s) 390, 1285
Bme18I GGWCC 2 cut(s) 327, 655
BmeT110I CYCGRG 3 cut(s) 182, 689, 1226
BmgBI CACGTC 1 cut(s) 324
BmgT120I GGNCC 3 cut(s) 327, 430, 655
BmiI GGNNCC 2 cut(s) 35, 396
BmrFI CCNGG 2 cut(s) 390, 1285
BmsI GCATC 1 cut(s) 1077
BoxI GACNNNNGTC 2 cut(s) 203, 444
BpiI GAAGAC 5 cut(s) 444, 458, 1016, 1221, 1314
BplI GAGNNNNNCTC 2 cut(s) 714, 746
Bpu10I CCTNAGC 1 cut(s) 579
Bpu14I TTCGAA 1 cut(s) 681
BpuEI CTTGAG 2 cut(s) 806, 851
BpuMI CCSGG 2 cut(s) 390, 1285
BsaBI GATNNNNATC 1 cut(s) 1320
BsaHI GRCGYC 1 cut(s) 371
BsaJI CCNNGG 3 cut(s) 29, 153, 389
BsaWI WCCGGW 2 cut(s) 649, 662
Bsc4I CCNNNNNNNGG 5 cut(s) 524, 525, 549, 630, 1036
Bse1I ACTGG 1 cut(s) 603
Bse8I GATNNNNATC 1 cut(s) 1320
BseAI TCCGGA 2 cut(s) 649, 662
BseDI CCNNGG 3 cut(s) 29, 153, 389
BseGI GGATG 6 cut(s) 97, 225, 790, 835, 880, 901
BseJI GATNNNNATC 1 cut(s) 1320
BseLI CCNNNNNNNGG 5 cut(s) 524, 525, 549, 630, 1036
BseMII CTCAG 2 cut(s) 119, 443
BseNI ACTGG 1 cut(s) 603
BseRI GAGGAG 2 cut(s) 136, 1121
BseXI GCAGC 3 cut(s) 1013, 1277, 1373
Bsh1236I CGCG 1 cut(s) 31
BshFI GGCC 3 cut(s) 72, 432, 572
BshNI GGYRCC 1 cut(s) 33
BsiHKAI GWGCWC 5 cut(s) 690, 732, 777, 822, 867
BsiHKCI CYCGRG 3 cut(s) 182, 689, 1226
BsiSI CCGG 6 cut(s) 73, 389, 398, 650, 663, 1284
BslFI GGGAC 1 cut(s) 525
BslI CCNNNNNNNGG 5 cut(s) 524, 525, 549, 630, 1036
BsmAI GTCTC 2 cut(s) 1268, 1320
BsmBI CGTCTC 1 cut(s) 1320
BsmFI GGGAC 1 cut(s) 525
BsmI GAATGC 2 cut(s) 277, 1090
BsnI GGCC 3 cut(s) 72, 432, 572
BsoBI CYCGRG 3 cut(s) 182, 689, 1226
Bsp119I TTCGAA 1 cut(s) 681
Bsp1286I GDGCHC 5 cut(s) 690, 732, 777, 822, 867
Bsp13I TCCGGA 2 cut(s) 649, 662
BspACI CCGC 7 cut(s) 29, 31, 37, 386, 569, 872, 1006
BspANI GGCC 3 cut(s) 72, 432, 572
BspCNI CTCAG 2 cut(s) 118, 444
BspEI TCCGGA 2 cut(s) 649, 662
BspFNI CGCG 1 cut(s) 31
BspHI TCATGA 1 cut(s) 1318
BspLI GGNNCC 2 cut(s) 35, 396
BspPI GGATC 4 cut(s) 166, 228, 641, 695
BspQI GCTCTTC 5 cut(s) 678, 720, 765, 810, 855
BspT104I TTCGAA 1 cut(s) 681
BspT107I GGYRCC 1 cut(s) 33
BsrI ACTGG 1 cut(s) 603
BssECI CCNNGG 3 cut(s) 29, 153, 389
BssNI GRCGYC 1 cut(s) 371
BssT1I CCWWGG 1 cut(s) 153
Bst6I CTCTTC 6 cut(s) 678, 720, 765, 810, 855, 1188
BstACI GRCGYC 1 cut(s) 371
BstBI TTCGAA 1 cut(s) 681
BstC8I GCNNGC 1 cut(s) 13
BstDEI CTNAG 5 cut(s) 105, 318, 452, 579, 995
BstDSI CCRYGG 1 cut(s) 29
BstF5I GGATG 6 cut(s) 97, 225, 790, 835, 880, 901
BstFNI CGCG 1 cut(s) 31
BstHHI GCGC 1 cut(s) 11
BstMAI GTCTC 2 cut(s) 1268, 1320
BstMWI GCNNNNNNNGC 3 cut(s) 42, 394, 589
BstNSI RCATGY 2 cut(s) 92, 1281
BstPAI GACNNNNGTC 2 cut(s) 203, 444
BstSCI CCNGG 2 cut(s) 388, 1283
BstUI CGCG 1 cut(s) 31
BstV1I GCAGC 3 cut(s) 1013, 1277, 1373
BstV2I GAAGAC 5 cut(s) 444, 458, 1016, 1221, 1314
BstX2I RGATCY 2 cut(s) 158, 455
BstYI RGATCY 2 cut(s) 158, 455
BsuRI GGCC 3 cut(s) 72, 432, 572
BtgI CCRYGG 1 cut(s) 29
BtrI CACGTC 1 cut(s) 324
BtsCI GGATG 6 cut(s) 97, 225, 790, 835, 880, 901
BtsI GCAGTG 1 cut(s) 40
BtsIMutI CAGTG 1 cut(s) 40
Cac8I GCNNGC 1 cut(s) 13
CciI TCATGA 1 cut(s) 1318
CfoI GCGC 1 cut(s) 11
Cfr13I GGNCC 3 cut(s) 327, 430, 655
Cfr42I CCGCGG 1 cut(s) 32
CseI GACGC 1 cut(s) 379
Csp6I GTAC 3 cut(s) 187, 982, 1177
CviQI GTAC 3 cut(s) 187, 982, 1177
DdeI CTNAG 5 cut(s) 105, 318, 452, 579, 995
DraI TTTAAA 1 cut(s) 715
DraIII CACNNNGTG 1 cut(s) 235
EaeI YGGCCR 1 cut(s) 70
Eam1104I CTCTTC 6 cut(s) 678, 720, 765, 810, 855, 1188
EarI CTCTTC 6 cut(s) 678, 720, 765, 810, 855, 1188
EciI GGCGGA 1 cut(s) 887
Ecl136II GAGCTC 5 cut(s) 688, 730, 775, 820, 865
Eco130I CCWWGG 1 cut(s) 153
Eco24I GRGCYC 5 cut(s) 690, 732, 777, 822, 867
Eco47I GGWCC 2 cut(s) 327, 655
Eco53kI GAGCTC 5 cut(s) 688, 730, 775, 820, 865
Eco57I CTGAAG 2 cut(s) 444, 1212
Eco88I CYCGRG 3 cut(s) 182, 689, 1226
EcoICRI GAGCTC 5 cut(s) 688, 730, 775, 820, 865
EcoO109I RGGNCCY 2 cut(s) 430, 655
EcoT14I CCWWGG 1 cut(s) 153
EcoT22I ATGCAT 3 cut(s) 90, 1092, 1212
EcoT38I GRGCYC 5 cut(s) 690, 732, 777, 822, 867
ErhI CCWWGG 1 cut(s) 153
Esp3I CGTCTC 1 cut(s) 1320
FaqI GGGAC 1 cut(s) 525
FbaI TGATCA 3 cut(s) 336, 405, 1315
Fnu4HI GCNGC 6 cut(s) 37, 386, 570, 1027, 1291, 1387
FokI GGATG 6 cut(s) 84, 212, 797, 842, 887, 908
FriOI GRGCYC 5 cut(s) 690, 732, 777, 822, 867
Fsp4HI GCNGC 6 cut(s) 37, 386, 570, 1027, 1291, 1387
FspBI CTAG 2 cut(s) 990, 1121
FspI TGCGCA 1 cut(s) 10
GlaI GCGC 1 cut(s) 10
GluI GCNGC 6 cut(s) 37, 386, 570, 1027, 1291, 1387
HaeIII GGCC 3 cut(s) 72, 432, 572
HapII CCGG 6 cut(s) 73, 389, 398, 650, 663, 1284
HgaI GACGC 1 cut(s) 379
HhaI GCGC 1 cut(s) 11
Hin1I GRCGYC 1 cut(s) 371
Hin6I GCGC 1 cut(s) 9
HinP1I GCGC 1 cut(s) 9
HinfI GANTC 7 cut(s) 349, 634, 788, 833, 878, 1042, 1377
HpaII CCGG 6 cut(s) 73, 389, 398, 650, 663, 1284
HphI GGTGA 3 cut(s) 133, 247, 1051
Hpy188I TCNGA 6 cut(s) 66, 108, 453, 477, 895, 925
Hpy188III TCNNGA 7 cut(s) 196, 557, 650, 663, 1228, 1319, 1325
Hpy99I CGWCG 1 cut(s) 379
HpyAV CCTTC 4 cut(s) 232, 259, 952, 1334
HpyCH4IV ACGT 2 cut(s) 323, 1417
HpyCH4V TGCA 4 cut(s) 88, 1090, 1210, 1293
HpyF10VI GCNNNNNNNGC 3 cut(s) 42, 394, 589
HpyF3I CTNAG 5 cut(s) 105, 318, 452, 579, 995
HpySE526I ACGT 2 cut(s) 323, 1417
Hsp92I GRCGYC 1 cut(s) 371
HspAI GCGC 1 cut(s) 9
Kpn2I TCCGGA 2 cut(s) 649, 662
Ksp22I TGATCA 3 cut(s) 336, 405, 1315
KspI CCGCGG 1 cut(s) 32
LguI GCTCTTC 5 cut(s) 678, 720, 765, 810, 855
LmnI GCTCC 5 cut(s) 75, 394, 477, 1187, 1287
Lsp1109I GCAGC 3 cut(s) 1013, 1277, 1373
LweI GCATC 1 cut(s) 1077
MaeI CTAG 2 cut(s) 990, 1121
MaeII ACGT 2 cut(s) 323, 1417
MflI RGATCY 2 cut(s) 158, 455
MhlI GDGCHC 5 cut(s) 690, 732, 777, 822, 867
MluCI AATT 7 cut(s) 293, 309, 613, 619, 641, 910, 1296
MmeI TCCRAC 1 cut(s) 1405
Mph1103I ATGCAT 3 cut(s) 90, 1092, 1212
MroI TCCGGA 2 cut(s) 649, 662
MseI TTAA 1 cut(s) 714
MspA1I CMGCKG 1 cut(s) 31
MspI CCGG 6 cut(s) 73, 389, 398, 650, 663, 1284
MspR9I CCNGG 2 cut(s) 390, 1285
Mva1269I GAATGC 2 cut(s) 277, 1090
MvnI CGCG 1 cut(s) 31
MwoI GCNNNNNNNGC 3 cut(s) 42, 394, 589
NciI CCSGG 2 cut(s) 390, 1285
NlaIV GGNNCC 2 cut(s) 35, 396
NsbI TGCGCA 1 cut(s) 10
NsiI ATGCAT 3 cut(s) 90, 1092, 1212
NspI RCATGY 2 cut(s) 92, 1281
NspV TTCGAA 1 cut(s) 681
PaeR7I CTCGAG 3 cut(s) 182, 689, 1226
PagI TCATGA 1 cut(s) 1318
PciI ACATGT 1 cut(s) 1277
PciSI GCTCTTC 5 cut(s) 678, 720, 765, 810, 855
PcsI WCGNNNNNNNCGW 2 cut(s) 687, 1224
PctI GAATGC 2 cut(s) 277, 1090
PfeI GAWTC 7 cut(s) 349, 634, 788, 833, 878, 1042, 1377
PflFI GACNNNGTC 1 cut(s) 325
PfoI TCCNGGA 1 cut(s) 1283
PkrI GCNGC 6 cut(s) 38, 387, 571, 1028, 1292, 1388
PpuMI RGGWCCY 1 cut(s) 655
PscI ACATGT 1 cut(s) 1277
PshAI GACNNNNGTC 2 cut(s) 203, 444
Psp124BI GAGCTC 5 cut(s) 690, 732, 777, 822, 867
Psp5II RGGWCCY 1 cut(s) 655
PspN4I GGNNCC 2 cut(s) 35, 396
PspPI GGNCC 3 cut(s) 327, 430, 655
PspPPI RGGWCCY 1 cut(s) 655
PspXI VCTCGAGB 2 cut(s) 182, 689
PsuI RGATCY 2 cut(s) 158, 455
PsyI GACNNNGTC 1 cut(s) 325
RsaI GTAC 3 cut(s) 188, 983, 1178
RsaNI GTAC 3 cut(s) 187, 982, 1177
SacI GAGCTC 5 cut(s) 690, 732, 777, 822, 867
SacII CCGCGG 1 cut(s) 32
SapI GCTCTTC 5 cut(s) 678, 720, 765, 810, 855
SaqAI TTAA 1 cut(s) 714
SatI GCNGC 6 cut(s) 37, 386, 570, 1027, 1291, 1387
Sau96I GGNCC 3 cut(s) 327, 430, 655
ScrFI CCNGG 2 cut(s) 390, 1285
SduI GDGCHC 5 cut(s) 690, 732, 777, 822, 867
SfaNI GCATC 1 cut(s) 1077
Sfr274I CTCGAG 3 cut(s) 182, 689, 1226
Sfr303I CCGCGG 1 cut(s) 32
SfuI TTCGAA 1 cut(s) 681
SgrBI CCGCGG 1 cut(s) 32
SinI GGWCC 2 cut(s) 327, 655
SlaI CTCGAG 3 cut(s) 182, 689, 1226
SmlI CTYRAG 5 cut(s) 182, 689, 821, 866, 1226
SmoI CTYRAG 5 cut(s) 182, 689, 821, 866, 1226
SpeI ACTAGT 1 cut(s) 989
Sse9I AATT 7 cut(s) 293, 309, 613, 619, 641, 910, 1296
SsiI CCGC 7 cut(s) 29, 31, 37, 386, 569, 872, 1006
SspMI CTAG 2 cut(s) 990, 1121
SstI GAGCTC 5 cut(s) 690, 732, 777, 822, 867
StyD4I CCNGG 2 cut(s) 388, 1283
StyI CCWWGG 1 cut(s) 153
TaiI ACGT 2 cut(s) 326, 1420
TaqI TCGA 8 cut(s) 17, 183, 299, 681, 690, 1085, 1227, 1324
TasI AATT 7 cut(s) 293, 309, 613, 619, 641, 910, 1296
TatI WGTACW 2 cut(s) 981, 1176
TauI GCSGC 3 cut(s) 39, 388, 572
TfiI GAWTC 7 cut(s) 349, 634, 788, 833, 878, 1042, 1377
Tru1I TTAA 1 cut(s) 714
Tru9I TTAA 1 cut(s) 714
TscAI CASTG 1 cut(s) 47
TseI GCWGC 3 cut(s) 1026, 1290, 1386
TspRI CASTG 1 cut(s) 47
Tth111I GACNNNGTC 1 cut(s) 325
VpaK11BI GGWCC 2 cut(s) 327, 655
XapI RAATTY 3 cut(s) 293, 613, 1296
XceI RCATGY 2 cut(s) 92, 1281
XhoI CTCGAG 3 cut(s) 182, 689, 1226
XspI CTAG 2 cut(s) 990, 1121
Zsp2I ATGCAT 3 cut(s) 90, 1092, 1212
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.