Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2D

Orthogroup ID

OG0012964

Physical Location & Seq

Genomic Coordinates Reverse (-)

85945716 .. 85948344

Gene Structure 2629 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2DG630000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1491 bp

ATGGGTTGCGCAAGCTCGAAGAAATCTCCACGGTGCCGCCACTGCCACAACCACTATTCTTCTCCGATTGGCCGGAGCTACTCAATGCATGTTCATCATCCACCTCAGAACAGAGGCGACAGCTACCATGTTGTTGCCCTCACCTCCTCCACCTTGGGATCTCTCAACAACGATAATCGGCTCGAGTACGAGTTCAAGACGATTGTCAATGACAATAAGGATCACATCCACAAGGTGAAGGAGAAGAAACTTGGGGAGGTGGAGAAGGAGAATGTCAATGGAAACAATAAGGAATTTTCGATGGGTCTAATTGAGGCTAAGACGTGGTCCAATATGATCAACCAGAAGATTCCCAAGATTATACCCAAGACGCCGACGAGAACGCCGCCGGGGGAGCCGGAGATGATCAATGCTTGGGAGTTGATGGAGGGCCTTGAAGACATAAGTCCTCTGAGATCTTCAGGTCTTCATCTTCGGAGCTTTTCTTTTGATGTTATCAAAAGTCCATGCCCTGTTCCCGTTTCAGGGGGTGTTGATCGTCCCAAGTCAAGGTTTCAAGAAAATGGTGCGGCCTCGCCTAAGCCTCTGTGGCTTCAACTGGCTGATTGTGAGAATTTCAATTCCAATGTTGGGATTCCACAATTTGATCCGGAGGTCCTTTCCGGATTTAGAAAATCTTTCGAAGAGCTCGAGGAAGATGATCCATTTCATTTTAAAGATGGAGAAGAGCTCAATGAGGATATTTCTTTTCATTTTAGAGATAGAAAAGAAGAGCTCAATGAGGATGATTCTTTTCATTTCAGGGATAGAGAAGAAGAGCTCAAGGAGGATGATTCTTTTCATTTCAAGGATAGAGAAGAAGAGCTCAAGGCGGATGATTCTTTTCGCTTCTCGGATGAAAAGGAGGTAAATAGCTTCATTTCGGATTACAAATGTGAAGTGCCTTTTGGTAAGGCGAAGGATAGAGAGAAAGTGGTGTTGTACTTCACTAGTCTTAGAGGGGTGCGGAAGACTTATGAGGATTGTTGCCATGTGAGGGTGATTCTAAAAGGCATAGGTGTTCGGGTTGATGAGCGAGATGTTTCGATGCATTCGGGGTTCAAGGAGGAGTTGAAAGAGCTAGTGAAAGATGGGTGTAGTGGAGTGTCTTTGCCTAAAGTGTTTGTGGGGGAAAAGTACATTGGTGGAGCTGAAGAGATGCGGCAAATGCATGAAGACGGGAAGCTCGAGAAGTTGCTTGAATCTTGTGAAAAATTGAGTGATGGCGGTGTAGGTGGTGGTAGTGTTTGTGAGGCTTGTGGGGATATAAGGTTTGTGCCATGTGAGACATGTTCCGGGAGCTGCAAAATTTACCATGAAGACGATGATCATGATCGAGACGAAGAACATGAAGGCGAAGAAGAAGAAGCAAAAGAGTGTGAGTGTGGATTCCAACGCTGCCCAGATTGTAATGAAAATGGTCTAATACGTTGCCCCATTTGTTGCTATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005623 GO:0005886 GO:0016020 GO:0044464 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Glutaredoxin

Protein Analysis

496

Amino Acids

56.55

Weight (kDa)

5.1

Isoelectric Point (pI)

47.3

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Glutaredoxin	PF00462	326 - 394	2.1e-10	Glutaredoxin
GRXCR1-2_C	PF23733	430 - 495	1.5e-19	GRXCR1/2, C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0012964)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G28850 AT5G39865
fragaria_vesca	FvH4_6g48990
malus_domestica	MD09G1049100.v1.1 MD17G1049100.v1.1
prunus_persica	Prupe.3G269700_v2.0.a1
pyrus_communis	pycom111g04010 pycom17g04410
rosa_chinensis	RchiOBHm_Chr2g0168831
rosa_laevigata	RLG00000021810
rosa_multiflora	Rmu_ssc0000393.1_g000006
rosa_roxburghii	Rroxscaffold_2G00082640
rosa_rugosa	Rorug02G0535600
rosa_samantha	Rh2AG606600 Rh2BG619400 Rh2CG588000 Rh2DG630000
rosa_wichuraiana	Rw2G050280

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	10
AccB1I	GGYRCC	1 cut(s)	33
AccIII	TCCGGA	2 cut(s)	649, 662
AciI	CCGC	7 cut(s)	37, 386, 569, 872, 1006, 1201, 1266
AclWI	GGATC	4 cut(s)	166, 228, 641, 695
AcoI	YGGCCR	1 cut(s)	70
AcsI	RAATTY	3 cut(s)	293, 613, 1347
AcuI	CTGAAG	2 cut(s)	444, 1212
AcyI	GRCGYC	1 cut(s)	371
AdeI	CACNNNGTG	1 cut(s)	235
AfaI	GTAC	3 cut(s)	188, 983, 1178
AfiI	CCNNNNNNNGG	5 cut(s)	524, 525, 549, 630, 1036
AflIII	ACRYGT	1 cut(s)	1328
AgsI	TTSAA	9 cut(s)	196, 437, 557, 596, 619, 847, 1102, 1114, 1241
AhlI	ACTAGT	1 cut(s)	989
AjiI	CACGTC	1 cut(s)	324
AjuI	GAANNNNNNNTTGG	4 cut(s)	930, 962, 1164, 1196
Alw21I	GWGCWC	5 cut(s)	690, 732, 777, 822, 867
Alw26I	GTCTC	2 cut(s)	1319, 1371
AlwI	GGATC	4 cut(s)	166, 228, 641, 695
Ama87I	CYCGRG	3 cut(s)	182, 689, 1226
Aor13HI	TCCGGA	2 cut(s)	649, 662
AoxI	GGCC	3 cut(s)	70, 430, 570
ApeKI	GCWGC	2 cut(s)	1341, 1437
ApoI	RAATTY	3 cut(s)	293, 613, 1347
AspLEI	GCGC	1 cut(s)	11
AspS9I	GGNCC	3 cut(s)	327, 430, 655
AsuC2I	CCSGG	2 cut(s)	390, 1336
AsuHPI	GGTGA	3 cut(s)	133, 247, 1051
AsuII	TTCGAA	1 cut(s)	681
AvaI	CYCGRG	3 cut(s)	182, 689, 1226
AvaII	GGWCC	2 cut(s)	327, 655
BanI	GGYRCC	1 cut(s)	33
BanII	GRGCYC	5 cut(s)	690, 732, 777, 822, 867
BbsI	GAAGAC	5 cut(s)	444, 458, 1016, 1221, 1365
Bbv12I	GWGCWC	5 cut(s)	690, 732, 777, 822, 867
BbvI	GCAGC	2 cut(s)	1328, 1424
BccI	CCATC	5 cut(s)	295, 418, 713, 1124, 1256
BclI	TGATCA	3 cut(s)	336, 405, 1366
BcnI	CCSGG	2 cut(s)	390, 1336
BcoDI	GTCTC	2 cut(s)	1319, 1371
BcuI	ACTAGT	1 cut(s)	989
BfaI	CTAG	2 cut(s)	990, 1121
BglI	GCCNNNNNGGC	1 cut(s)	589
BglII	AGATCT	1 cut(s)	455
BisI	GCNGC	6 cut(s)	37, 386, 570, 1202, 1342, 1438
BlsI	GCNGC	6 cut(s)	38, 387, 571, 1203, 1343, 1439
Bme1390I	CCNGG	2 cut(s)	390, 1336
Bme18I	GGWCC	2 cut(s)	327, 655
BmeT110I	CYCGRG	3 cut(s)	182, 689, 1226
BmgBI	CACGTC	1 cut(s)	324
BmgT120I	GGNCC	3 cut(s)	327, 430, 655
BmiI	GGNNCC	2 cut(s)	35, 396
BmrFI	CCNGG	2 cut(s)	390, 1336
BmsI	GCATC	2 cut(s)	1077, 1188
BoxI	GACNNNNGTC	2 cut(s)	203, 444
BpiI	GAAGAC	5 cut(s)	444, 458, 1016, 1221, 1365
BplI	GAGNNNNNCTC	2 cut(s)	714, 746
Bpu10I	CCTNAGC	1 cut(s)	579
Bpu14I	TTCGAA	1 cut(s)	681
BpuEI	CTTGAG	2 cut(s)	806, 851
BpuMI	CCSGG	2 cut(s)	390, 1336
BsaBI	GATNNNNATC	1 cut(s)	1371
BsaHI	GRCGYC	1 cut(s)	371
BsaJI	CCNNGG	3 cut(s)	29, 153, 389
BsaWI	WCCGGW	2 cut(s)	649, 662
Bsc4I	CCNNNNNNNGG	5 cut(s)	524, 525, 549, 630, 1036
Bse1I	ACTGG	1 cut(s)	603
Bse8I	GATNNNNATC	1 cut(s)	1371
BseAI	TCCGGA	2 cut(s)	649, 662
BseDI	CCNNGG	3 cut(s)	29, 153, 389
BseGI	GGATG	6 cut(s)	97, 225, 790, 835, 880, 901
BseJI	GATNNNNATC	1 cut(s)	1371
BseLI	CCNNNNNNNGG	5 cut(s)	524, 525, 549, 630, 1036
BseMII	CTCAG	2 cut(s)	119, 443
BseNI	ACTGG	1 cut(s)	603
BseRI	GAGGAG	2 cut(s)	136, 1121
BseXI	GCAGC	2 cut(s)	1328, 1424
BshFI	GGCC	3 cut(s)	72, 432, 572
BshNI	GGYRCC	1 cut(s)	33
BsiHKAI	GWGCWC	5 cut(s)	690, 732, 777, 822, 867
BsiHKCI	CYCGRG	3 cut(s)	182, 689, 1226
BsiSI	CCGG	6 cut(s)	73, 389, 398, 650, 663, 1335
BslFI	GGGAC	1 cut(s)	525
BslI	CCNNNNNNNGG	5 cut(s)	524, 525, 549, 630, 1036
BsmAI	GTCTC	2 cut(s)	1319, 1371
BsmBI	CGTCTC	1 cut(s)	1371
BsmFI	GGGAC	1 cut(s)	525
BsmI	GAATGC	1 cut(s)	1090
BsnI	GGCC	3 cut(s)	72, 432, 572
BsoBI	CYCGRG	3 cut(s)	182, 689, 1226
Bsp119I	TTCGAA	1 cut(s)	681
Bsp1286I	GDGCHC	5 cut(s)	690, 732, 777, 822, 867
Bsp13I	TCCGGA	2 cut(s)	649, 662
BspACI	CCGC	7 cut(s)	37, 386, 569, 872, 1006, 1201, 1266
BspANI	GGCC	3 cut(s)	72, 432, 572
BspCNI	CTCAG	2 cut(s)	118, 444
BspEI	TCCGGA	2 cut(s)	649, 662
BspHI	TCATGA	1 cut(s)	1369
BspLI	GGNNCC	2 cut(s)	35, 396
BspPI	GGATC	4 cut(s)	166, 228, 641, 695
BspQI	GCTCTTC	5 cut(s)	678, 720, 765, 810, 855
BspT104I	TTCGAA	1 cut(s)	681
BspT107I	GGYRCC	1 cut(s)	33
BsrI	ACTGG	1 cut(s)	603
BssECI	CCNNGG	3 cut(s)	29, 153, 389
BssNI	GRCGYC	1 cut(s)	371
BssT1I	CCWWGG	1 cut(s)	153
Bst4CI	ACNGT	1 cut(s)	33
Bst6I	CTCTTC	6 cut(s)	678, 720, 765, 810, 855, 1188
BstACI	GRCGYC	1 cut(s)	371
BstBI	TTCGAA	1 cut(s)	681
BstC8I	GCNNGC	1 cut(s)	13
BstDEI	CTNAG	5 cut(s)	105, 318, 452, 579, 995
BstDSI	CCRYGG	1 cut(s)	29
BstF5I	GGATG	6 cut(s)	97, 225, 790, 835, 880, 901
BstHHI	GCGC	1 cut(s)	11
BstMAI	GTCTC	2 cut(s)	1319, 1371
BstMWI	GCNNNNNNNGC	4 cut(s)	42, 394, 589, 1207
BstNSI	RCATGY	2 cut(s)	92, 1332
BstPAI	GACNNNNGTC	2 cut(s)	203, 444
BstSCI	CCNGG	2 cut(s)	388, 1334
BstV1I	GCAGC	2 cut(s)	1328, 1424
BstV2I	GAAGAC	5 cut(s)	444, 458, 1016, 1221, 1365
BstX2I	RGATCY	2 cut(s)	158, 455
BstYI	RGATCY	2 cut(s)	158, 455
BsuRI	GGCC	3 cut(s)	72, 432, 572
BtgI	CCRYGG	1 cut(s)	29
BtrI	CACGTC	1 cut(s)	324
BtsCI	GGATG	6 cut(s)	97, 225, 790, 835, 880, 901
BtsI	GCAGTG	1 cut(s)	40
BtsIMutI	CAGTG	1 cut(s)	40
Cac8I	GCNNGC	1 cut(s)	13
CciI	TCATGA	1 cut(s)	1369
CfoI	GCGC	1 cut(s)	11
Cfr13I	GGNCC	3 cut(s)	327, 430, 655
CseI	GACGC	1 cut(s)	379
Csp6I	GTAC	3 cut(s)	187, 982, 1177
CviQI	GTAC	3 cut(s)	187, 982, 1177
DdeI	CTNAG	5 cut(s)	105, 318, 452, 579, 995
DraI	TTTAAA	1 cut(s)	715
DraIII	CACNNNGTG	1 cut(s)	235
EaeI	YGGCCR	1 cut(s)	70
Eam1104I	CTCTTC	6 cut(s)	678, 720, 765, 810, 855, 1188
EarI	CTCTTC	6 cut(s)	678, 720, 765, 810, 855, 1188
EciI	GGCGGA	1 cut(s)	887
Ecl136II	GAGCTC	5 cut(s)	688, 730, 775, 820, 865
Eco130I	CCWWGG	1 cut(s)	153
Eco24I	GRGCYC	5 cut(s)	690, 732, 777, 822, 867
Eco47I	GGWCC	2 cut(s)	327, 655
Eco53kI	GAGCTC	5 cut(s)	688, 730, 775, 820, 865
Eco57I	CTGAAG	2 cut(s)	444, 1212
Eco88I	CYCGRG	3 cut(s)	182, 689, 1226
EcoICRI	GAGCTC	5 cut(s)	688, 730, 775, 820, 865
EcoO109I	RGGNCCY	2 cut(s)	430, 655
EcoT14I	CCWWGG	1 cut(s)	153
EcoT22I	ATGCAT	3 cut(s)	90, 1092, 1212
EcoT38I	GRGCYC	5 cut(s)	690, 732, 777, 822, 867
ErhI	CCWWGG	1 cut(s)	153
Esp3I	CGTCTC	1 cut(s)	1371
FaqI	GGGAC	1 cut(s)	525
FbaI	TGATCA	3 cut(s)	336, 405, 1366
Fnu4HI	GCNGC	6 cut(s)	37, 386, 570, 1202, 1342, 1438
FokI	GGATG	6 cut(s)	84, 212, 797, 842, 887, 908
FriOI	GRGCYC	5 cut(s)	690, 732, 777, 822, 867
Fsp4HI	GCNGC	6 cut(s)	37, 386, 570, 1202, 1342, 1438
FspBI	CTAG	2 cut(s)	990, 1121
FspI	TGCGCA	1 cut(s)	10
GlaI	GCGC	1 cut(s)	10
GluI	GCNGC	6 cut(s)	37, 386, 570, 1202, 1342, 1438
HaeIII	GGCC	3 cut(s)	72, 432, 572
HapII	CCGG	6 cut(s)	73, 389, 398, 650, 663, 1335
HgaI	GACGC	1 cut(s)	379
HhaI	GCGC	1 cut(s)	11
Hin1I	GRCGYC	1 cut(s)	371
Hin6I	GCGC	1 cut(s)	9
HinP1I	GCGC	1 cut(s)	9
HinfI	GANTC	8 cut(s)	349, 634, 788, 833, 878, 1042, 1241, 1428
HpaII	CCGG	6 cut(s)	73, 389, 398, 650, 663, 1335
HphI	GGTGA	3 cut(s)	133, 247, 1051
Hpy188I	TCNGA	6 cut(s)	66, 108, 453, 477, 895, 925
Hpy188III	TCNNGA	7 cut(s)	196, 557, 650, 663, 1228, 1370, 1376
Hpy99I	CGWCG	1 cut(s)	379
HpyAV	CCTTC	4 cut(s)	232, 259, 952, 1385
HpyCH4III	ACNGT	1 cut(s)	33
HpyCH4IV	ACGT	2 cut(s)	323, 1468
HpyCH4V	TGCA	4 cut(s)	88, 1090, 1210, 1344
HpyF10VI	GCNNNNNNNGC	4 cut(s)	42, 394, 589, 1207
HpyF3I	CTNAG	5 cut(s)	105, 318, 452, 579, 995
HpySE526I	ACGT	2 cut(s)	323, 1468
Hsp92I	GRCGYC	1 cut(s)	371
HspAI	GCGC	1 cut(s)	9
Kpn2I	TCCGGA	2 cut(s)	649, 662
Ksp22I	TGATCA	3 cut(s)	336, 405, 1366
LguI	GCTCTTC	5 cut(s)	678, 720, 765, 810, 855
LmnI	GCTCC	5 cut(s)	75, 394, 477, 1187, 1338
Lsp1109I	GCAGC	2 cut(s)	1328, 1424
LweI	GCATC	2 cut(s)	1077, 1188
MaeI	CTAG	2 cut(s)	990, 1121
MaeII	ACGT	2 cut(s)	323, 1468
MflI	RGATCY	2 cut(s)	158, 455
MhlI	GDGCHC	5 cut(s)	690, 732, 777, 822, 867
MluCI	AATT	7 cut(s)	293, 309, 613, 619, 641, 1253, 1347
MmeI	TCCRAC	1 cut(s)	1456
Mph1103I	ATGCAT	3 cut(s)	90, 1092, 1212
MroI	TCCGGA	2 cut(s)	649, 662
MseI	TTAA	1 cut(s)	714
MspI	CCGG	6 cut(s)	73, 389, 398, 650, 663, 1335
MspR9I	CCNGG	2 cut(s)	390, 1336
Mva1269I	GAATGC	1 cut(s)	1090
MwoI	GCNNNNNNNGC	4 cut(s)	42, 394, 589, 1207
NciI	CCSGG	2 cut(s)	390, 1336
NlaIV	GGNNCC	2 cut(s)	35, 396
NsbI	TGCGCA	1 cut(s)	10
NsiI	ATGCAT	3 cut(s)	90, 1092, 1212
NspI	RCATGY	2 cut(s)	92, 1332
NspV	TTCGAA	1 cut(s)	681
PaeR7I	CTCGAG	3 cut(s)	182, 689, 1226
PagI	TCATGA	1 cut(s)	1369
PciI	ACATGT	1 cut(s)	1328
PciSI	GCTCTTC	5 cut(s)	678, 720, 765, 810, 855
PcsI	WCGNNNNNNNCGW	2 cut(s)	687, 1224
PctI	GAATGC	1 cut(s)	1090
PfeI	GAWTC	8 cut(s)	349, 634, 788, 833, 878, 1042, 1241, 1428
PflFI	GACNNNGTC	1 cut(s)	325
PfoI	TCCNGGA	1 cut(s)	1334
PkrI	GCNGC	6 cut(s)	38, 387, 571, 1203, 1343, 1439
PpuMI	RGGWCCY	1 cut(s)	655
PscI	ACATGT	1 cut(s)	1328
PshAI	GACNNNNGTC	2 cut(s)	203, 444
Psp124BI	GAGCTC	5 cut(s)	690, 732, 777, 822, 867
Psp5II	RGGWCCY	1 cut(s)	655
PspN4I	GGNNCC	2 cut(s)	35, 396
PspPI	GGNCC	3 cut(s)	327, 430, 655
PspPPI	RGGWCCY	1 cut(s)	655
PspXI	VCTCGAGB	2 cut(s)	182, 689
PsuI	RGATCY	2 cut(s)	158, 455
PsyI	GACNNNGTC	1 cut(s)	325
RsaI	GTAC	3 cut(s)	188, 983, 1178
RsaNI	GTAC	3 cut(s)	187, 982, 1177
SacI	GAGCTC	5 cut(s)	690, 732, 777, 822, 867
SapI	GCTCTTC	5 cut(s)	678, 720, 765, 810, 855
SaqAI	TTAA	1 cut(s)	714
SatI	GCNGC	6 cut(s)	37, 386, 570, 1202, 1342, 1438
Sau96I	GGNCC	3 cut(s)	327, 430, 655
ScrFI	CCNGG	2 cut(s)	390, 1336
SduI	GDGCHC	5 cut(s)	690, 732, 777, 822, 867
SfaNI	GCATC	2 cut(s)	1077, 1188
Sfr274I	CTCGAG	3 cut(s)	182, 689, 1226
SfuI	TTCGAA	1 cut(s)	681
SinI	GGWCC	2 cut(s)	327, 655
SlaI	CTCGAG	3 cut(s)	182, 689, 1226
SmlI	CTYRAG	5 cut(s)	182, 689, 821, 866, 1226
SmoI	CTYRAG	5 cut(s)	182, 689, 821, 866, 1226
SpeI	ACTAGT	1 cut(s)	989
Sse9I	AATT	7 cut(s)	293, 309, 613, 619, 641, 1253, 1347
SsiI	CCGC	7 cut(s)	37, 386, 569, 872, 1006, 1201, 1266
SspMI	CTAG	2 cut(s)	990, 1121
SstI	GAGCTC	5 cut(s)	690, 732, 777, 822, 867
StyD4I	CCNGG	2 cut(s)	388, 1334
StyI	CCWWGG	1 cut(s)	153
TaaI	ACNGT	1 cut(s)	33
TaiI	ACGT	2 cut(s)	326, 1471
TaqI	TCGA	8 cut(s)	17, 183, 299, 681, 690, 1085, 1227, 1375
TasI	AATT	7 cut(s)	293, 309, 613, 619, 641, 1253, 1347
TatI	WGTACW	2 cut(s)	981, 1176
TauI	GCSGC	4 cut(s)	39, 388, 572, 1204
TfiI	GAWTC	8 cut(s)	349, 634, 788, 833, 878, 1042, 1241, 1428
Tru1I	TTAA	1 cut(s)	714
Tru9I	TTAA	1 cut(s)	714
TscAI	CASTG	1 cut(s)	47
TseI	GCWGC	2 cut(s)	1341, 1437
TspRI	CASTG	1 cut(s)	47
Tth111I	GACNNNGTC	1 cut(s)	325
VpaK11BI	GGWCC	2 cut(s)	327, 655
XapI	RAATTY	3 cut(s)	293, 613, 1347
XceI	RCATGY	2 cut(s)	92, 1332
XhoI	CTCGAG	3 cut(s)	182, 689, 1226
XspI	CTAG	2 cut(s)	990, 1121
Zsp2I	ATGCAT	3 cut(s)	90, 1092, 1212

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.