Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0011749

Physical Location & Seq

Genomic Coordinates Reverse (-)

10855623 .. 10856787

Gene Structure 1165 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT3G28857.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 279 bp

ATGTCTAACAGAAGATCAAGACAAACTTCGAATGCTTCGAGGATCTCCGATGACCAGATGATCGACCTCGTTAGTAAGCTCCGTCAGTTTTTGCCGGAGATTCACGAACGGCGTCGTTCTGATAAGGTGTCAGCATCAAAGGTACTACAAGAGACATGCAACTACATAAGAAAATTGCATAGAGAAGTTGACAATCTCAGTGATCGTTTGTCGCAGCTTCTTGACTCTGTTGATGAAGATAGCCCTGAAGCTGCCGTGATTAGAAGCTTACTCATGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000902 GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0006355 GO:0007275 GO:0008150 GO:0009314 GO:0009416 GO:0009628 GO:0009639 GO:0009640 GO:0009653 GO:0009719 GO:0009725 GO:0009741 GO:0009791 GO:0009826 GO:0009889 GO:0009987 GO:0010033 GO:0010468 GO:0010556 GO:0014070 GO:0016043 GO:0016049 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0032989 GO:0033993 GO:0040007 GO:0040034 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0048506 GO:0048509 GO:0048510 GO:0048589 GO:0048856 GO:0048869 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0060255 GO:0060560 GO:0065007 GO:0071840 GO:0080090 GO:0140110 GO:1901700 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

HLH

Protein Analysis

92

Amino Acids

10.7

Weight (kDa)

7.95

Isoelectric Point (pI)

76.71

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
bHLH_ILI	PF23174	16 - 91	3.8e-30	ILI bHLH domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0011749)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G28857 AT5G15160 AT5G39860
fragaria_vesca	FvH4_3g04290 FvH4_6g48970
malus_domestica	MD09G1049300.v1.1 MD17G1049300.v1.1
prunus_persica	Prupe.3G269500_v2.0.a1 Prupe.3G269500_v2.0.a1 Prupe.3G269500_v2.0.a1
pyrus_communis	pycom111g04030
rosa_chinensis	RchiOBHm_Chr2g0168811
rosa_roxburghii	Rroxscaffold_2G00082660
rosa_rugosa	Rorug02G0535300
rosa_samantha	Rh2AG606400 Rh2BG619200 Rh2CG587800 Rh2DG629800
rosa_wichuraiana	Rw2G050260

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	1 cut(s)	50
AcuI	CTGAAG	1 cut(s)	267
AcyI	GRCGYC	1 cut(s)	112
AfaI	GTAC	1 cut(s)	144
AluBI	AGCT	4 cut(s)	79, 217, 251, 267
AluI	AGCT	4 cut(s)	79, 217, 251, 267
Alw26I	GTCTC	1 cut(s)	146
AlwI	GGATC	1 cut(s)	50
ApeKI	GCWGC	2 cut(s)	214, 251
AsuII	TTCGAA	1 cut(s)	29
BbvI	GCAGC	2 cut(s)	226, 238
BceAI	ACGGC	2 cut(s)	125, 239
BcoDI	GTCTC	1 cut(s)	146
BisI	GCNGC	2 cut(s)	215, 252
BlsI	GCNGC	2 cut(s)	216, 253
BmsI	GCATC	1 cut(s)	143
Bpu14I	TTCGAA	1 cut(s)	29
BsaHI	GRCGYC	1 cut(s)	112
BseMII	CTCAG	1 cut(s)	211
BseXI	GCAGC	2 cut(s)	226, 238
BsiSI	CCGG	1 cut(s)	95
BsmAI	GTCTC	1 cut(s)	146
BsmI	GAATGC	1 cut(s)	37
Bsp119I	TTCGAA	1 cut(s)	29
Bsp143I	GATC	4 cut(s)	14, 42, 60, 202
BspCNI	CTCAG	1 cut(s)	210
BspPI	GGATC	1 cut(s)	50
BspT104I	TTCGAA	1 cut(s)	29
BssMI	GATC	4 cut(s)	14, 42, 60, 202
BssNI	GRCGYC	1 cut(s)	112
BstACI	GRCGYC	1 cut(s)	112
BstBI	TTCGAA	1 cut(s)	29
BstDEI	CTNAG	1 cut(s)	197
BstKTI	GATC	4 cut(s)	17, 45, 63, 205
BstMAI	GTCTC	1 cut(s)	146
BstMBI	GATC	4 cut(s)	14, 42, 60, 202
BstNSI	RCATGY	1 cut(s)	159
BstV1I	GCAGC	2 cut(s)	226, 238
BstX2I	RGATCY	1 cut(s)	42
BstYI	RGATCY	1 cut(s)	42
BtsIMutI	CAGTG	1 cut(s)	205
CseI	GACGC	1 cut(s)	101
Csp6I	GTAC	1 cut(s)	143
CviAII	CATG	2 cut(s)	156, 274
CviJI	RGCY	5 cut(s)	79, 217, 243, 251, 267
CviKI_1	RGCY	5 cut(s)	79, 217, 243, 251, 267
CviQI	GTAC	1 cut(s)	143
DdeI	CTNAG	1 cut(s)	197
DpnI	GATC	4 cut(s)	16, 44, 62, 204
DpnII	GATC	4 cut(s)	14, 42, 60, 202
Eco57I	CTGAAG	1 cut(s)	267
FaeI	CATG	2 cut(s)	159, 277
FaiI	YATR	4 cut(s)	157, 167, 180, 275
FalI	AAGNNNNNCTT	2 cut(s)	10, 42
FatI	CATG	2 cut(s)	155, 273
Fnu4HI	GCNGC	2 cut(s)	215, 252
Fsp4HI	GCNGC	2 cut(s)	215, 252
GluI	GCNGC	2 cut(s)	215, 252
HapII	CCGG	1 cut(s)	95
HgaI	GACGC	1 cut(s)	101
Hin1I	GRCGYC	1 cut(s)	112
Hin1II	CATG	2 cut(s)	159, 277
HincII	GTYRAC	1 cut(s)	190
HindII	GTYRAC	1 cut(s)	190
HindIII	AAGCTT	1 cut(s)	265
HinfI	GANTC	2 cut(s)	100, 224
HpaII	CCGG	1 cut(s)	95
Hpy166II	GTNNAC	1 cut(s)	190
Hpy188I	TCNGA	2 cut(s)	49, 121
Hpy188III	TCNNGA	3 cut(s)	18, 104, 221
Hpy8I	GTNNAC	1 cut(s)	190
Hpy99I	CGWCG	1 cut(s)	117
HpyCH4V	TGCA	2 cut(s)	159, 178
HpyF3I	CTNAG	1 cut(s)	197
Hsp92I	GRCGYC	1 cut(s)	112
Hsp92II	CATG	2 cut(s)	159, 277
Kzo9I	GATC	4 cut(s)	14, 42, 60, 202
LmnI	GCTCC	1 cut(s)	84
LpnPI	CCDG	3 cut(s)	68, 108, 258
Lsp1109I	GCAGC	2 cut(s)	226, 238
LweI	GCATC	1 cut(s)	143
MalI	GATC	4 cut(s)	16, 44, 62, 204
MboI	GATC	4 cut(s)	14, 42, 60, 202
MboII	GAAGA	2 cut(s)	24, 248
MflI	RGATCY	1 cut(s)	42
MluCI	AATT	1 cut(s)	173
MlyI	GAGTC	1 cut(s)	218
MnlI	CCTC	2 cut(s)	33, 77
MspI	CCGG	1 cut(s)	95
Mva1269I	GAATGC	1 cut(s)	37
NdeII	GATC	4 cut(s)	14, 42, 60, 202
NlaIII	CATG	2 cut(s)	159, 277
NspI	RCATGY	1 cut(s)	159
NspV	TTCGAA	1 cut(s)	29
PcsI	WCGNNNNNNNCGW	1 cut(s)	35
PctI	GAATGC	1 cut(s)	37
PfeI	GAWTC	1 cut(s)	100
PkrI	GCNGC	2 cut(s)	216, 253
PleI	GAGTC	1 cut(s)	218
PpsI	GAGTC	1 cut(s)	218
PsuI	RGATCY	1 cut(s)	42
RsaI	GTAC	1 cut(s)	144
RsaNI	GTAC	1 cut(s)	143
SatI	GCNGC	2 cut(s)	215, 252
Sau3AI	GATC	4 cut(s)	14, 42, 60, 202
SchI	GAGTC	1 cut(s)	218
SetI	ASST	7 cut(s)	69, 81, 129, 144, 219, 253, 269
SfaNI	GCATC	1 cut(s)	143
SfuI	TTCGAA	1 cut(s)	29
Sse9I	AATT	1 cut(s)	173
TaqI	TCGA	3 cut(s)	29, 38, 63
TasI	AATT	1 cut(s)	173
TfiI	GAWTC	1 cut(s)	100
TscAI	CASTG	1 cut(s)	205
TseI	GCWGC	2 cut(s)	214, 251
TspDTI	ATGAA	1 cut(s)	249
TspGWI	ACGGA	1 cut(s)	71
TspRI	CASTG	1 cut(s)	205
XceI	RCATGY	1 cut(s)	159

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.