Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb6

Orthogroup ID

OG0011749

Physical Location & Seq

Genomic Coordinates Forward (+)

36774011 .. 36775515

Gene Structure 1505 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_6g48970.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 285 bp

ATGTCTAGCAGAAGGTCATCAAGGCAGTCATCGGGAAGTACTCCATCAATCAAAGATGACCAGATCATCGAGCTCGTCTCCAAGTTGCGCCAGCTGGTTCCTGAGATTCGCGACAGGCGCTCCGATAAGGTATCAGCATCCAAGGTCCTACAAGAGACCTGCAGCTACATCAGAAACTTACACAGAGAAGTTGACGACTTGAGCGAGAGGCTGTCCCAACTGCTCGCTACAATTGACGCTGATAGCGCTGAGGCCGCCATTATTAGGAGCTTGATTATGCAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000902 GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0006355 GO:0007275 GO:0008150 GO:0009314 GO:0009416 GO:0009628 GO:0009639 GO:0009640 GO:0009653 GO:0009719 GO:0009725 GO:0009741 GO:0009791 GO:0009826 GO:0009889 GO:0009987 GO:0010033 GO:0010468 GO:0010556 GO:0014070 GO:0016043 GO:0016049 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0032989 GO:0033993 GO:0040007 GO:0040034 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0048506 GO:0048509 GO:0048510 GO:0048589 GO:0048856 GO:0048869 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0060255 GO:0060560 GO:0065007 GO:0071840 GO:0080090 GO:0140110 GO:1901700 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

HLH

Protein Analysis

95

Amino Acids

10.6

Weight (kDa)

7.93

Isoelectric Point (pI)

78.87

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
bHLH_ILI	PF23174	19 - 92	1.1e-33	ILI bHLH domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0011749)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G28857 AT5G15160 AT5G39860
fragaria_vesca	FvH4_3g04290 FvH4_6g48970
malus_domestica	MD09G1049300.v1.1 MD17G1049300.v1.1
prunus_persica	Prupe.3G269500_v2.0.a1 Prupe.3G269500_v2.0.a1 Prupe.3G269500_v2.0.a1
pyrus_communis	pycom111g04030
rosa_chinensis	RchiOBHm_Chr2g0168811
rosa_roxburghii	Rroxscaffold_2G00082660
rosa_rugosa	Rorug02G0535300
rosa_samantha	Rh2AG606400 Rh2BG619200 Rh2CG587800 Rh2DG629800
rosa_wichuraiana	Rw2G050260

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	167
AccII	CGCG	1 cut(s)	111
AciI	CCGC	1 cut(s)	255
AfaI	GTAC	1 cut(s)	40
AfeI	AGCGCT	1 cut(s)	247
AfiI	CCNNNNNNNGG	1 cut(s)	264
AluBI	AGCT	4 cut(s)	73, 94, 165, 270
AluI	AGCT	4 cut(s)	73, 94, 165, 270
Alw21I	GWGCWC	1 cut(s)	75
Alw26I	GTCTC	2 cut(s)	82, 149
Aor51HI	AGCGCT	1 cut(s)	247
AoxI	GGCC	1 cut(s)	252
ApeKI	GCWGC	1 cut(s)	162
AspLEI	GCGC	3 cut(s)	90, 120, 248
AspS9I	GGNCC	1 cut(s)	145
AvaII	GGWCC	1 cut(s)	145
BanII	GRGCYC	1 cut(s)	75
Bbv12I	GWGCWC	1 cut(s)	75
BbvCI	CCTCAGC	1 cut(s)	249
BbvI	GCAGC	1 cut(s)	174
BccI	CCATC	1 cut(s)	52
BcoDI	GTCTC	2 cut(s)	82, 149
BfaI	CTAG	1 cut(s)	6
BfmI	CTRYAG	1 cut(s)	160
BfoI	RGCGCY	2 cut(s)	121, 249
BfuAI	ACCTGC	1 cut(s)	167
BisI	GCNGC	2 cut(s)	163, 255
BlsI	GCNGC	2 cut(s)	164, 256
BmcAI	AGTACT	1 cut(s)	40
Bme18I	GGWCC	1 cut(s)	145
BmgT120I	GGNCC	1 cut(s)	145
BmiI	GGNNCC	1 cut(s)	99
BmsI	GCATC	1 cut(s)	146
BplI	GAGNNNNNCTC	2 cut(s)	62, 94
Bpu10I	CCTNAGC	1 cut(s)	249
BpuEI	CTTGAG	1 cut(s)	220
BsaI	GGTCTC	1 cut(s)	149
BsaJI	CCNNGG	1 cut(s)	141
BsaXI	ACNNNNNCTCC	2 cut(s)	104, 134
Bsc4I	CCNNNNNNNGG	1 cut(s)	264
BseDI	CCNNGG	1 cut(s)	141
BseGI	GGATG	1 cut(s)	137
BseLI	CCNNNNNNNGG	1 cut(s)	264
BseMII	CTCAG	2 cut(s)	93, 240
BseXI	GCAGC	1 cut(s)	174
Bsh1236I	CGCG	1 cut(s)	111
BshFI	GGCC	1 cut(s)	254
BsiHKAI	GWGCWC	1 cut(s)	75
BslFI	GGGAC	1 cut(s)	199
BslI	CCNNNNNNNGG	1 cut(s)	264
BsmAI	GTCTC	2 cut(s)	82, 149
BsmBI	CGTCTC	1 cut(s)	82
BsmFI	GGGAC	1 cut(s)	199
BsnI	GGCC	1 cut(s)	254
Bso31I	GGTCTC	1 cut(s)	149
Bsp1286I	GDGCHC	1 cut(s)	75
Bsp143I	GATC	1 cut(s)	63
Bsp68I	TCGCGA	1 cut(s)	111
BspACI	CCGC	1 cut(s)	255
BspANI	GGCC	1 cut(s)	254
BspCNI	CTCAG	2 cut(s)	94, 241
BspFNI	CGCG	1 cut(s)	111
BspLI	GGNNCC	1 cut(s)	99
BspMAI	CTGCAG	1 cut(s)	164
BspMI	ACCTGC	1 cut(s)	167
BspTNI	GGTCTC	1 cut(s)	149
BssECI	CCNNGG	1 cut(s)	141
BssMI	GATC	1 cut(s)	63
BssT1I	CCWWGG	1 cut(s)	141
BstC8I	GCNNGC	2 cut(s)	92, 225
BstDEI	CTNAG	2 cut(s)	102, 249
BstF5I	GGATG	1 cut(s)	137
BstFNI	CGCG	1 cut(s)	111
BstH2I	RGCGCY	2 cut(s)	121, 249
BstHHI	GCGC	3 cut(s)	90, 120, 248
BstKTI	GATC	1 cut(s)	66
BstMAI	GTCTC	2 cut(s)	82, 149
BstMBI	GATC	1 cut(s)	63
BstMWI	GCNNNNNNNGC	3 cut(s)	117, 245, 254
BstSFI	CTRYAG	1 cut(s)	160
BstUI	CGCG	1 cut(s)	111
BstV1I	GCAGC	1 cut(s)	174
BsuRI	GGCC	1 cut(s)	254
BtsCI	GGATG	1 cut(s)	137
BtuMI	TCGCGA	1 cut(s)	111
BveI	ACCTGC	1 cut(s)	167
Cac8I	GCNNGC	2 cut(s)	92, 225
CfoI	GCGC	3 cut(s)	90, 120, 248
Cfr13I	GGNCC	1 cut(s)	145
CseI	GACGC	1 cut(s)	245
Csp6I	GTAC	1 cut(s)	39
CviJI	RGCY	6 cut(s)	73, 94, 165, 211, 254, 270
CviKI_1	RGCY	6 cut(s)	73, 94, 165, 211, 254, 270
CviQI	GTAC	1 cut(s)	39
DdeI	CTNAG	2 cut(s)	102, 249
DpnI	GATC	1 cut(s)	65
DpnII	GATC	1 cut(s)	63
Ecl136II	GAGCTC	1 cut(s)	73
Eco130I	CCWWGG	1 cut(s)	141
Eco24I	GRGCYC	1 cut(s)	75
Eco31I	GGTCTC	1 cut(s)	149
Eco47I	GGWCC	1 cut(s)	145
Eco47III	AGCGCT	1 cut(s)	247
Eco53kI	GAGCTC	1 cut(s)	73
EcoICRI	GAGCTC	1 cut(s)	73
EcoO109I	RGGNCCY	1 cut(s)	145
EcoT14I	CCWWGG	1 cut(s)	141
EcoT38I	GRGCYC	1 cut(s)	75
ErhI	CCWWGG	1 cut(s)	141
Esp3I	CGTCTC	1 cut(s)	82
FaiI	YATR	1 cut(s)	278
FaqI	GGGAC	1 cut(s)	199
Fnu4HI	GCNGC	2 cut(s)	163, 255
FokI	GGATG	1 cut(s)	124
FriOI	GRGCYC	1 cut(s)	75
Fsp4HI	GCNGC	2 cut(s)	163, 255
FspBI	CTAG	1 cut(s)	6
GlaI	GCGC	3 cut(s)	89, 119, 247
GluI	GCNGC	2 cut(s)	163, 255
HaeII	RGCGCY	2 cut(s)	121, 249
HaeIII	GGCC	1 cut(s)	254
HgaI	GACGC	1 cut(s)	245
HhaI	GCGC	3 cut(s)	90, 120, 248
Hin6I	GCGC	3 cut(s)	88, 118, 246
HinP1I	GCGC	3 cut(s)	88, 118, 246
HincII	GTYRAC	1 cut(s)	193
HindII	GTYRAC	1 cut(s)	193
HinfI	GANTC	1 cut(s)	106
Hpy166II	GTNNAC	1 cut(s)	193
Hpy188I	TCNGA	2 cut(s)	124, 173
Hpy188III	TCNNGA	3 cut(s)	33, 101, 110
Hpy8I	GTNNAC	1 cut(s)	193
HpyAV	CCTTC	1 cut(s)	6
HpyCH4V	TGCA	2 cut(s)	162, 280
HpyF10VI	GCNNNNNNNGC	3 cut(s)	117, 245, 254
HpyF3I	CTNAG	2 cut(s)	102, 249
HspAI	GCGC	3 cut(s)	88, 118, 246
Kzo9I	GATC	1 cut(s)	63
LmnI	GCTCC	2 cut(s)	125, 267
LpnPI	CCDG	6 cut(s)	74, 80, 100, 104, 114, 172
Lsp1109I	GCAGC	1 cut(s)	174
LweI	GCATC	1 cut(s)	146
MaeI	CTAG	1 cut(s)	6
MalI	GATC	1 cut(s)	65
MboI	GATC	1 cut(s)	63
MfeI	CAATTG	1 cut(s)	231
MhlI	GDGCHC	1 cut(s)	75
MluCI	AATT	1 cut(s)	231
MnlI	CCTC	2 cut(s)	201, 244
MspA1I	CMGCKG	1 cut(s)	94
MunI	CAATTG	1 cut(s)	231
MvnI	CGCG	1 cut(s)	111
MwoI	GCNNNNNNNGC	3 cut(s)	117, 245, 254
NdeII	GATC	1 cut(s)	63
NlaIV	GGNNCC	1 cut(s)	99
NruI	TCGCGA	1 cut(s)	111
PcsI	WCGNNNNNNNCGW	1 cut(s)	201
PfeI	GAWTC	1 cut(s)	106
PkrI	GCNGC	2 cut(s)	164, 256
PpuMI	RGGWCCY	1 cut(s)	145
Psp124BI	GAGCTC	1 cut(s)	75
Psp5II	RGGWCCY	1 cut(s)	145
PspN4I	GGNNCC	1 cut(s)	99
PspPI	GGNCC	1 cut(s)	145
PspPPI	RGGWCCY	1 cut(s)	145
PstI	CTGCAG	1 cut(s)	164
PvuII	CAGCTG	1 cut(s)	94
RruI	TCGCGA	1 cut(s)	111
RsaI	GTAC	1 cut(s)	40
RsaNI	GTAC	1 cut(s)	39
SacI	GAGCTC	1 cut(s)	75
SatI	GCNGC	2 cut(s)	163, 255
Sau3AI	GATC	1 cut(s)	63
Sau96I	GGNCC	1 cut(s)	145
ScaI	AGTACT	1 cut(s)	40
SduI	GDGCHC	1 cut(s)	75
SetI	ASST	8 cut(s)	17, 75, 96, 132, 147, 161, 167, 272
SfaNI	GCATC	1 cut(s)	146
SfcI	CTRYAG	1 cut(s)	160
SinI	GGWCC	1 cut(s)	145
SmlI	CTYRAG	1 cut(s)	199
SmoI	CTYRAG	1 cut(s)	199
Sse9I	AATT	1 cut(s)	231
SsiI	CCGC	1 cut(s)	255
SspMI	CTAG	1 cut(s)	6
SstI	GAGCTC	1 cut(s)	75
StyI	CCWWGG	1 cut(s)	141
TaqI	TCGA	1 cut(s)	69
TasI	AATT	1 cut(s)	231
TatI	WGTACW	1 cut(s)	38
TauI	GCSGC	1 cut(s)	257
TfiI	GAWTC	1 cut(s)	106
TseI	GCWGC	1 cut(s)	162
VpaK11BI	GGWCC	1 cut(s)	145
XspI	CTAG	1 cut(s)	6
ZrmI	AGTACT	1 cut(s)	40

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.