Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr09

Orthogroup ID

OG0011749

Physical Location & Seq

Genomic Coordinates Reverse (-)

3280094 .. 3281655

Gene Structure 1562 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD09G1049300.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 276 bp

ATGTCTAGCAGAAGGTCGAGGCAGTCAGGTACTCCAGCGATCAAAGATGACCAAATCATCGAACTGGTGTCCAAATTACGTCAACTGGTTCCTGAGATTCGAGATAGGCGCTCCAACAAGGCACCAGCATCTAAGGTCCTACAAGAGACTTGCAGCTACATCAGAAACTTACACAGAGAGGTTGACGACCTAAGCGAGCGACTCTCCCAACTGCTCTCTACAATTGATGCTGATAGTCCGGAGGCCGCTATAATTAGGAGCTTGATTATGCAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000902 GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0006355 GO:0007275 GO:0008150 GO:0009314 GO:0009416 GO:0009628 GO:0009639 GO:0009640 GO:0009653 GO:0009719 GO:0009725 GO:0009741 GO:0009791 GO:0009826 GO:0009889 GO:0009987 GO:0010033 GO:0010468 GO:0010556 GO:0014070 GO:0016043 GO:0016049 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0032989 GO:0033993 GO:0040007 GO:0040034 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0048506 GO:0048509 GO:0048510 GO:0048589 GO:0048856 GO:0048869 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0060255 GO:0060560 GO:0065007 GO:0071840 GO:0080090 GO:0140110 GO:1901700 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

HLH

Protein Analysis

92

Amino Acids

10.35

Weight (kDa)

9.03

Isoelectric Point (pI)

91.41

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
bHLH_ILI	PF23174	16 - 89	5.2e-32	ILI bHLH domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Orthologous Genes (Group: OG0011749)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G28857 AT5G15160 AT5G39860
fragaria_vesca	FvH4_3g04290 FvH4_6g48970
malus_domestica	MD09G1049300.v1.1 MD17G1049300.v1.1
prunus_persica	Prupe.3G269500_v2.0.a1 Prupe.3G269500_v2.0.a1 Prupe.3G269500_v2.0.a1
pyrus_communis	pycom111g04030
rosa_chinensis	RchiOBHm_Chr2g0168811
rosa_roxburghii	Rroxscaffold_2G00082660
rosa_rugosa	Rorug02G0535300
rosa_samantha	Rh2AG606400 Rh2BG619200 Rh2CG587800 Rh2DG629800
rosa_wichuraiana	Rw2G050260

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	121
AccIII	TCCGGA	1 cut(s)	238
AciI	CCGC	1 cut(s)	246
AfaI	GTAC	1 cut(s)	31
AluBI	AGCT	2 cut(s)	156, 261
AluI	AGCT	2 cut(s)	156, 261
Alw26I	GTCTC	1 cut(s)	140
Aor13HI	TCCGGA	1 cut(s)	238
AoxI	GGCC	1 cut(s)	243
ApeKI	GCWGC	1 cut(s)	153
AspLEI	GCGC	1 cut(s)	111
AspS9I	GGNCC	1 cut(s)	136
AvaII	GGWCC	1 cut(s)	136
BanI	GGYRCC	1 cut(s)	121
BbvI	GCAGC	1 cut(s)	165
BcoDI	GTCTC	1 cut(s)	140
BfaI	CTAG	1 cut(s)	6
BfoI	RGCGCY	1 cut(s)	112
BisI	GCNGC	2 cut(s)	154, 246
BlsI	GCNGC	2 cut(s)	155, 247
Bme18I	GGWCC	1 cut(s)	136
BmgT120I	GGNCC	1 cut(s)	136
BmiI	GGNNCC	2 cut(s)	90, 123
BmsI	GCATC	2 cut(s)	137, 217
BplI	GAGNNNNNCTC	2 cut(s)	188, 220
BpmI	CTGGAG	1 cut(s)	18
Bpu10I	CCTNAGC	1 cut(s)	191
BsaWI	WCCGGW	1 cut(s)	238
Bse1I	ACTGG	2 cut(s)	69, 90
BseAI	TCCGGA	1 cut(s)	238
BseMII	CTCAG	1 cut(s)	84
BseNI	ACTGG	2 cut(s)	69, 90
BseXI	GCAGC	1 cut(s)	165
BshFI	GGCC	1 cut(s)	245
BshNI	GGYRCC	1 cut(s)	121
BsiSI	CCGG	1 cut(s)	239
BsmAI	GTCTC	1 cut(s)	140
BsnI	GGCC	1 cut(s)	245
Bsp13I	TCCGGA	1 cut(s)	238
Bsp143I	GATC	1 cut(s)	39
BspACI	CCGC	1 cut(s)	246
BspANI	GGCC	1 cut(s)	245
BspCNI	CTCAG	1 cut(s)	85
BspEI	TCCGGA	1 cut(s)	238
BspLI	GGNNCC	2 cut(s)	90, 123
BspT107I	GGYRCC	1 cut(s)	121
BsrI	ACTGG	2 cut(s)	69, 90
BssMI	GATC	1 cut(s)	39
BstC8I	GCNNGC	1 cut(s)	197
BstDEI	CTNAG	3 cut(s)	93, 132, 191
BstH2I	RGCGCY	1 cut(s)	112
BstHHI	GCGC	1 cut(s)	111
BstKTI	GATC	1 cut(s)	42
BstMAI	GTCTC	1 cut(s)	140
BstMBI	GATC	1 cut(s)	39
BstV1I	GCAGC	1 cut(s)	165
BsuRI	GGCC	1 cut(s)	245
Cac8I	GCNNGC	1 cut(s)	197
CfoI	GCGC	1 cut(s)	111
Cfr13I	GGNCC	1 cut(s)	136
Csp6I	GTAC	1 cut(s)	30
CviJI	RGCY	3 cut(s)	156, 245, 261
CviKI_1	RGCY	3 cut(s)	156, 245, 261
CviQI	GTAC	1 cut(s)	30
DdeI	CTNAG	3 cut(s)	93, 132, 191
DpnI	GATC	1 cut(s)	41
DpnII	GATC	1 cut(s)	39
Eco47I	GGWCC	1 cut(s)	136
EcoO109I	RGGNCCY	1 cut(s)	136
FaiI	YATR	2 cut(s)	251, 269
Fnu4HI	GCNGC	2 cut(s)	154, 246
Fsp4HI	GCNGC	2 cut(s)	154, 246
FspBI	CTAG	1 cut(s)	6
GlaI	GCGC	1 cut(s)	110
GluI	GCNGC	2 cut(s)	154, 246
GsuI	CTGGAG	1 cut(s)	18
HaeII	RGCGCY	1 cut(s)	112
HaeIII	GGCC	1 cut(s)	245
HapII	CCGG	1 cut(s)	239
HhaI	GCGC	1 cut(s)	111
Hin6I	GCGC	1 cut(s)	109
HinP1I	GCGC	1 cut(s)	109
HincII	GTYRAC	2 cut(s)	83, 184
HindII	GTYRAC	2 cut(s)	83, 184
HinfI	GANTC	2 cut(s)	97, 201
HpaII	CCGG	1 cut(s)	239
Hpy166II	GTNNAC	2 cut(s)	83, 184
Hpy188I	TCNGA	1 cut(s)	164
Hpy188III	TCNNGA	3 cut(s)	92, 101, 239
Hpy8I	GTNNAC	2 cut(s)	83, 184
HpyAV	CCTTC	1 cut(s)	6
HpyCH4IV	ACGT	1 cut(s)	79
HpyCH4V	TGCA	2 cut(s)	153, 271
HpyF3I	CTNAG	3 cut(s)	93, 132, 191
HpySE526I	ACGT	1 cut(s)	79
HspAI	GCGC	1 cut(s)	109
Kpn2I	TCCGGA	1 cut(s)	238
Kzo9I	GATC	1 cut(s)	39
LmnI	GCTCC	2 cut(s)	116, 258
LpnPI	CCDG	7 cut(s)	12, 48, 50, 71, 105, 138, 252
Lsp1109I	GCAGC	1 cut(s)	165
LweI	GCATC	2 cut(s)	137, 217
MaeI	CTAG	1 cut(s)	6
MaeII	ACGT	1 cut(s)	79
MalI	GATC	1 cut(s)	41
MboI	GATC	1 cut(s)	39
MfeI	CAATTG	1 cut(s)	222
MluCI	AATT	3 cut(s)	74, 222, 252
MlyI	GAGTC	1 cut(s)	195
MmeI	TCCRAC	1 cut(s)	138
MnlI	CCTC	3 cut(s)	12, 172, 235
MroI	TCCGGA	1 cut(s)	238
MspI	CCGG	1 cut(s)	239
MunI	CAATTG	1 cut(s)	222
NdeII	GATC	1 cut(s)	39
NlaIV	GGNNCC	2 cut(s)	90, 123
PcsI	WCGNNNNNNNCGW	1 cut(s)	192
PfeI	GAWTC	1 cut(s)	97
PkrI	GCNGC	2 cut(s)	155, 247
PleI	GAGTC	1 cut(s)	195
PpsI	GAGTC	1 cut(s)	195
PpuMI	RGGWCCY	1 cut(s)	136
Psp5II	RGGWCCY	1 cut(s)	136
PspN4I	GGNNCC	2 cut(s)	90, 123
PspPI	GGNCC	1 cut(s)	136
PspPPI	RGGWCCY	1 cut(s)	136
RsaI	GTAC	1 cut(s)	31
RsaNI	GTAC	1 cut(s)	30
SatI	GCNGC	2 cut(s)	154, 246
Sau3AI	GATC	1 cut(s)	39
Sau96I	GGNCC	1 cut(s)	136
SchI	GAGTC	1 cut(s)	195
SetI	ASST	8 cut(s)	17, 31, 82, 138, 158, 183, 192, 263
SfaNI	GCATC	2 cut(s)	137, 217
SinI	GGWCC	1 cut(s)	136
Sse9I	AATT	3 cut(s)	74, 222, 252
SsiI	CCGC	1 cut(s)	246
SspMI	CTAG	1 cut(s)	6
TaiI	ACGT	1 cut(s)	82
TaqI	TCGA	3 cut(s)	17, 60, 100
TasI	AATT	3 cut(s)	74, 222, 252
TauI	GCSGC	1 cut(s)	248
TfiI	GAWTC	1 cut(s)	97
TseI	GCWGC	1 cut(s)	153
VpaK11BI	GGWCC	1 cut(s)	136
XspI	CTAG	1 cut(s)	6

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.