Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb3

Orthogroup ID

OG0011749

Physical Location & Seq

Genomic Coordinates Forward (+)

2463114 .. 2463608

Gene Structure 495 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_3g04290.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 282 bp

ATGTCTAGCGGAAGGTCATCAAGCCAGTCATCGGGAAGTCCATCAATCAGAGATGACCAGATCATCGAGCTCGTCTCTAAGTTGCGCCAGTTGGTTCCTGAGACTCGCGACAGGCGCTCCGATCAGGTATCAGCTTCCAAGGTCCTACAAGAGACCTGCAGCTACATCAGAAACTTACAGAGAGAGGTTGAAGACTTGAGCGAGAGACTGTCCCAACTGCTCGCTACAATTGATGCTGATAGCGCTGAGGCCGCCATTTTTAGGAGCTTGATTATGCAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000902 GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0006355 GO:0007275 GO:0008150 GO:0009314 GO:0009416 GO:0009628 GO:0009639 GO:0009640 GO:0009653 GO:0009719 GO:0009725 GO:0009741 GO:0009791 GO:0009826 GO:0009889 GO:0009987 GO:0010033 GO:0010468 GO:0010556 GO:0014070 GO:0016043 GO:0016049 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0032989 GO:0033993 GO:0040007 GO:0040034 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0048506 GO:0048509 GO:0048510 GO:0048589 GO:0048856 GO:0048869 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0060255 GO:0060560 GO:0065007 GO:0071840 GO:0080090 GO:0140110 GO:1901700 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

HLH

Protein Analysis

94

Amino Acids

10.39

Weight (kDa)

5.07

Isoelectric Point (pI)

83.15

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
bHLH_ILI	PF23174	18 - 91	1.3e-30	ILI bHLH domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Orthologous Genes (Group: OG0011749)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G28857 AT5G15160 AT5G39860
fragaria_vesca	FvH4_3g04290 FvH4_6g48970
malus_domestica	MD09G1049300.v1.1 MD17G1049300.v1.1
prunus_persica	Prupe.3G269500_v2.0.a1 Prupe.3G269500_v2.0.a1 Prupe.3G269500_v2.0.a1
pyrus_communis	pycom111g04030
rosa_chinensis	RchiOBHm_Chr2g0168811
rosa_roxburghii	Rroxscaffold_2G00082660
rosa_rugosa	Rorug02G0535300
rosa_samantha	Rh2AG606400 Rh2BG619200 Rh2CG587800 Rh2DG629800
rosa_wichuraiana	Rw2G050260

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	164
AccII	CGCG	1 cut(s)	108
AciI	CCGC	2 cut(s)	9, 252
AfeI	AGCGCT	1 cut(s)	244
AfiI	CCNNNNNNNGG	2 cut(s)	31, 261
AgsI	TTSAA	1 cut(s)	191
AluBI	AGCT	4 cut(s)	70, 134, 162, 267
AluI	AGCT	4 cut(s)	70, 134, 162, 267
Alw21I	GWGCWC	1 cut(s)	72
Alw26I	GTCTC	4 cut(s)	79, 95, 146, 199
Aor51HI	AGCGCT	1 cut(s)	244
AoxI	GGCC	1 cut(s)	249
ApeKI	GCWGC	1 cut(s)	159
AspLEI	GCGC	3 cut(s)	87, 117, 245
AspS9I	GGNCC	1 cut(s)	142
AvaII	GGWCC	1 cut(s)	142
BanII	GRGCYC	1 cut(s)	72
BbsI	GAAGAC	1 cut(s)	198
Bbv12I	GWGCWC	1 cut(s)	72
BbvCI	CCTCAGC	1 cut(s)	246
BbvI	GCAGC	1 cut(s)	171
BccI	CCATC	1 cut(s)	49
BcoDI	GTCTC	4 cut(s)	79, 95, 146, 199
BfaI	CTAG	1 cut(s)	6
BfmI	CTRYAG	1 cut(s)	157
BfoI	RGCGCY	2 cut(s)	118, 246
BfuAI	ACCTGC	1 cut(s)	164
BisI	GCNGC	2 cut(s)	160, 252
BlsI	GCNGC	2 cut(s)	161, 253
Bme18I	GGWCC	1 cut(s)	142
BmgT120I	GGNCC	1 cut(s)	142
BmiI	GGNNCC	1 cut(s)	96
BmsI	GCATC	1 cut(s)	223
BpiI	GAAGAC	1 cut(s)	198
BplI	GAGNNNNNCTC	2 cut(s)	59, 91
Bpu10I	CCTNAGC	1 cut(s)	246
BpuEI	CTTGAG	1 cut(s)	217
BsaI	GGTCTC	1 cut(s)	146
BsaJI	CCNNGG	1 cut(s)	138
BsaXI	ACNNNNNCTCC	2 cut(s)	101, 131
Bsc4I	CCNNNNNNNGG	2 cut(s)	31, 261
Bse1I	ACTGG	2 cut(s)	25, 88
BseDI	CCNNGG	1 cut(s)	138
BseLI	CCNNNNNNNGG	2 cut(s)	31, 261
BseMII	CTCAG	2 cut(s)	90, 237
BseNI	ACTGG	2 cut(s)	25, 88
BseXI	GCAGC	1 cut(s)	171
Bsh1236I	CGCG	1 cut(s)	108
BshFI	GGCC	1 cut(s)	251
BsiHKAI	GWGCWC	1 cut(s)	72
BslFI	GGGAC	1 cut(s)	196
BslI	CCNNNNNNNGG	2 cut(s)	31, 261
BsmAI	GTCTC	4 cut(s)	79, 95, 146, 199
BsmBI	CGTCTC	1 cut(s)	79
BsmFI	GGGAC	1 cut(s)	196
BsnI	GGCC	1 cut(s)	251
Bso31I	GGTCTC	1 cut(s)	146
Bsp1286I	GDGCHC	1 cut(s)	72
Bsp143I	GATC	2 cut(s)	60, 121
Bsp68I	TCGCGA	1 cut(s)	108
BspACI	CCGC	2 cut(s)	9, 252
BspANI	GGCC	1 cut(s)	251
BspCNI	CTCAG	2 cut(s)	91, 238
BspFNI	CGCG	1 cut(s)	108
BspLI	GGNNCC	1 cut(s)	96
BspMAI	CTGCAG	1 cut(s)	161
BspMI	ACCTGC	1 cut(s)	164
BspTNI	GGTCTC	1 cut(s)	146
BsrI	ACTGG	2 cut(s)	25, 88
BssECI	CCNNGG	1 cut(s)	138
BssMI	GATC	2 cut(s)	60, 121
BssT1I	CCWWGG	1 cut(s)	138
Bst4CI	ACNGT	1 cut(s)	210
BstC8I	GCNNGC	1 cut(s)	222
BstDEI	CTNAG	3 cut(s)	78, 99, 246
BstFNI	CGCG	1 cut(s)	108
BstH2I	RGCGCY	2 cut(s)	118, 246
BstHHI	GCGC	3 cut(s)	87, 117, 245
BstKTI	GATC	2 cut(s)	63, 124
BstMAI	GTCTC	4 cut(s)	79, 95, 146, 199
BstMBI	GATC	2 cut(s)	60, 121
BstMWI	GCNNNNNNNGC	3 cut(s)	114, 242, 251
BstSFI	CTRYAG	1 cut(s)	157
BstUI	CGCG	1 cut(s)	108
BstV1I	GCAGC	1 cut(s)	171
BstV2I	GAAGAC	1 cut(s)	198
BsuRI	GGCC	1 cut(s)	251
BtuMI	TCGCGA	1 cut(s)	108
BveI	ACCTGC	1 cut(s)	164
Cac8I	GCNNGC	1 cut(s)	222
CfoI	GCGC	3 cut(s)	87, 117, 245
Cfr13I	GGNCC	1 cut(s)	142
CviJI	RGCY	6 cut(s)	24, 70, 134, 162, 251, 267
CviKI_1	RGCY	6 cut(s)	24, 70, 134, 162, 251, 267
DdeI	CTNAG	3 cut(s)	78, 99, 246
DpnI	GATC	2 cut(s)	62, 123
DpnII	GATC	2 cut(s)	60, 121
Ecl136II	GAGCTC	1 cut(s)	70
Eco130I	CCWWGG	1 cut(s)	138
Eco24I	GRGCYC	1 cut(s)	72
Eco31I	GGTCTC	1 cut(s)	146
Eco47I	GGWCC	1 cut(s)	142
Eco47III	AGCGCT	1 cut(s)	244
Eco53kI	GAGCTC	1 cut(s)	70
EcoICRI	GAGCTC	1 cut(s)	70
EcoO109I	RGGNCCY	1 cut(s)	142
EcoT14I	CCWWGG	1 cut(s)	138
EcoT38I	GRGCYC	1 cut(s)	72
ErhI	CCWWGG	1 cut(s)	138
Esp3I	CGTCTC	1 cut(s)	79
FaiI	YATR	1 cut(s)	275
FaqI	GGGAC	1 cut(s)	196
Fnu4HI	GCNGC	2 cut(s)	160, 252
FriOI	GRGCYC	1 cut(s)	72
Fsp4HI	GCNGC	2 cut(s)	160, 252
FspBI	CTAG	1 cut(s)	6
GlaI	GCGC	3 cut(s)	86, 116, 244
GluI	GCNGC	2 cut(s)	160, 252
HaeII	RGCGCY	2 cut(s)	118, 246
HaeIII	GGCC	1 cut(s)	251
HhaI	GCGC	3 cut(s)	87, 117, 245
Hin6I	GCGC	3 cut(s)	85, 115, 243
HinP1I	GCGC	3 cut(s)	85, 115, 243
HinfI	GANTC	1 cut(s)	103
Hpy188I	TCNGA	3 cut(s)	50, 121, 170
Hpy188III	TCNNGA	3 cut(s)	33, 98, 107
HpyAV	CCTTC	1 cut(s)	6
HpyCH4III	ACNGT	1 cut(s)	210
HpyCH4V	TGCA	2 cut(s)	159, 277
HpyF10VI	GCNNNNNNNGC	3 cut(s)	114, 242, 251
HpyF3I	CTNAG	3 cut(s)	78, 99, 246
HspAI	GCGC	3 cut(s)	85, 115, 243
Kzo9I	GATC	2 cut(s)	60, 121
LmnI	GCTCC	2 cut(s)	122, 264
LpnPI	CCDG	7 cut(s)	38, 71, 97, 101, 110, 111, 169
Lsp1109I	GCAGC	1 cut(s)	171
LweI	GCATC	1 cut(s)	223
MaeI	CTAG	1 cut(s)	6
MalI	GATC	2 cut(s)	62, 123
MboI	GATC	2 cut(s)	60, 121
MboII	GAAGA	1 cut(s)	203
MfeI	CAATTG	1 cut(s)	228
MhlI	GDGCHC	1 cut(s)	72
MluCI	AATT	1 cut(s)	228
MlyI	GAGTC	1 cut(s)	97
MnlI	CCTC	2 cut(s)	178, 241
MunI	CAATTG	1 cut(s)	228
MvnI	CGCG	1 cut(s)	108
MwoI	GCNNNNNNNGC	3 cut(s)	114, 242, 251
NdeII	GATC	2 cut(s)	60, 121
NlaIV	GGNNCC	1 cut(s)	96
NruI	TCGCGA	1 cut(s)	108
PkrI	GCNGC	2 cut(s)	161, 253
PleI	GAGTC	1 cut(s)	97
PpsI	GAGTC	1 cut(s)	97
PpuMI	RGGWCCY	1 cut(s)	142
Psp124BI	GAGCTC	1 cut(s)	72
Psp5II	RGGWCCY	1 cut(s)	142
PspN4I	GGNNCC	1 cut(s)	96
PspPI	GGNCC	1 cut(s)	142
PspPPI	RGGWCCY	1 cut(s)	142
PstI	CTGCAG	1 cut(s)	161
RruI	TCGCGA	1 cut(s)	108
SacI	GAGCTC	1 cut(s)	72
SatI	GCNGC	2 cut(s)	160, 252
Sau3AI	GATC	2 cut(s)	60, 121
Sau96I	GGNCC	1 cut(s)	142
SchI	GAGTC	1 cut(s)	97
SduI	GDGCHC	1 cut(s)	72
SetI	ASST	9 cut(s)	17, 72, 129, 136, 144, 158, 164, 189, 269
SfaNI	GCATC	1 cut(s)	223
SfcI	CTRYAG	1 cut(s)	157
SinI	GGWCC	1 cut(s)	142
SmlI	CTYRAG	1 cut(s)	196
SmoI	CTYRAG	1 cut(s)	196
Sse9I	AATT	1 cut(s)	228
SsiI	CCGC	2 cut(s)	9, 252
SspMI	CTAG	1 cut(s)	6
SstI	GAGCTC	1 cut(s)	72
StyI	CCWWGG	1 cut(s)	138
TaaI	ACNGT	1 cut(s)	210
TaqI	TCGA	1 cut(s)	66
TasI	AATT	1 cut(s)	228
TauI	GCSGC	1 cut(s)	254
TseI	GCWGC	1 cut(s)	159
VpaK11BI	GGWCC	1 cut(s)	142
XspI	CTAG	1 cut(s)	6

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.