Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0011749

Physical Location & Seq

Genomic Coordinates Reverse (-)

4921243 .. 4922812

Gene Structure 1570 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT5G15160.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 285 bp

ATGTCTTCTAGCAGAAGGTCGAGACAAGCAAGCTCATCATCAAGAATTAGCGATGACCAGATCACTGATCTCATCTCAAAGCTCCGACAGTCCATTCCGGAGATTCGCCAGAACCGTCGTTCCAACACGGTATCAGCGTCGAAAGTGTTACAAGAGACTTGCAACTACATAAGAAACTTGAACAAGGAAGCCGATGACCTCAGTGATCGATTGACTCAGCTTCTGGAATCCATTGATCCTAATAGCCCACAAGCCGCAGTTATTAGGAGCTTGATTAATGGATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000902 GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0006355 GO:0007275 GO:0008150 GO:0009314 GO:0009416 GO:0009628 GO:0009639 GO:0009640 GO:0009653 GO:0009719 GO:0009725 GO:0009741 GO:0009791 GO:0009826 GO:0009889 GO:0009987 GO:0010033 GO:0010468 GO:0010556 GO:0014070 GO:0016043 GO:0016049 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0032989 GO:0033993 GO:0040007 GO:0040034 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0048506 GO:0048509 GO:0048510 GO:0048589 GO:0048856 GO:0048869 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0060255 GO:0060560 GO:0065007 GO:0071840 GO:0080090 GO:0140110 GO:1901700 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

HLH

Protein Analysis

94

Amino Acids

10.55

Weight (kDa)

9.61

Isoelectric Point (pI)

84.94

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
bHLH_ILI	PF23174	17 - 92	2.5e-27	ILI bHLH domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Orthologous Genes (Group: OG0011749)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G28857 AT5G15160 AT5G39860
fragaria_vesca	FvH4_3g04290 FvH4_6g48970
malus_domestica	MD09G1049300.v1.1 MD17G1049300.v1.1
prunus_persica	Prupe.3G269500_v2.0.a1 Prupe.3G269500_v2.0.a1 Prupe.3G269500_v2.0.a1
pyrus_communis	pycom111g04030
rosa_chinensis	RchiOBHm_Chr2g0168811
rosa_roxburghii	Rroxscaffold_2G00082660
rosa_rugosa	Rorug02G0535300
rosa_samantha	Rh2AG606400 Rh2BG619200 Rh2CG587800 Rh2DG629800
rosa_wichuraiana	Rw2G050260

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccIII	TCCGGA	1 cut(s)	97
AciI	CCGC	1 cut(s)	255
AclWI	GGATC	1 cut(s)	230
AgsI	TTSAA	1 cut(s)	181
AloI	GAACNNNNNNTCC	2 cut(s)	104, 136
AluBI	AGCT	4 cut(s)	33, 82, 220, 270
AluI	AGCT	4 cut(s)	33, 82, 220, 270
Alw26I	GTCTC	2 cut(s)	16, 149
AlwI	GGATC	1 cut(s)	230
AlwNI	CAGNNNCTG	1 cut(s)	223
Aor13HI	TCCGGA	1 cut(s)	97
AseI	ATTAAT	1 cut(s)	276
BcoDI	GTCTC	2 cut(s)	16, 149
BfaI	CTAG	1 cut(s)	9
BisI	GCNGC	1 cut(s)	255
BlsI	GCNGC	1 cut(s)	256
Bsa29I	ATCGAT	1 cut(s)	208
BsaWI	WCCGGW	1 cut(s)	97
BseAI	TCCGGA	1 cut(s)	97
BseCI	ATCGAT	1 cut(s)	208
BseMII	CTCAG	2 cut(s)	214, 230
BshVI	ATCGAT	1 cut(s)	208
BsiSI	CCGG	1 cut(s)	98
BsmAI	GTCTC	2 cut(s)	16, 149
Bsp13I	TCCGGA	1 cut(s)	97
Bsp143I	GATC	4 cut(s)	60, 67, 205, 235
BspACI	CCGC	1 cut(s)	255
BspCNI	CTCAG	2 cut(s)	213, 229
BspDI	ATCGAT	1 cut(s)	208
BspEI	TCCGGA	1 cut(s)	97
BspPI	GGATC	1 cut(s)	230
BssMI	GATC	4 cut(s)	60, 67, 205, 235
Bst4CI	ACNGT	3 cut(s)	90, 116, 130
BstC8I	GCNNGC	1 cut(s)	31
BstDEI	CTNAG	2 cut(s)	200, 216
BstKTI	GATC	4 cut(s)	63, 70, 208, 238
BstMAI	GTCTC	2 cut(s)	16, 149
BstMBI	GATC	4 cut(s)	60, 67, 205, 235
Bsu15I	ATCGAT	1 cut(s)	208
BsuTUI	ATCGAT	1 cut(s)	208
BtgZI	GCGATG	1 cut(s)	66
BtsIMutI	CAGTG	2 cut(s)	63, 208
Cac8I	GCNNGC	1 cut(s)	31
CaiI	CAGNNNCTG	1 cut(s)	223
ClaI	ATCGAT	1 cut(s)	208
CseI	GACGC	1 cut(s)	126
CviJI	RGCY	7 cut(s)	33, 82, 191, 220, 246, 254, 270
CviKI_1	RGCY	7 cut(s)	33, 82, 191, 220, 246, 254, 270
DdeI	CTNAG	2 cut(s)	200, 216
DpnI	GATC	4 cut(s)	62, 69, 207, 237
DpnII	GATC	4 cut(s)	60, 67, 205, 235
FaiI	YATR	1 cut(s)	170
Fnu4HI	GCNGC	1 cut(s)	255
Fsp4HI	GCNGC	1 cut(s)	255
FspBI	CTAG	1 cut(s)	9
GluI	GCNGC	1 cut(s)	255
HapII	CCGG	1 cut(s)	98
HgaI	GACGC	1 cut(s)	126
HinfI	GANTC	3 cut(s)	103, 214, 227
HpaII	CCGG	1 cut(s)	98
Hpy188I	TCNGA	1 cut(s)	86
Hpy188III	TCNNGA	4 cut(s)	21, 42, 98, 224
Hpy99I	CGWCG	2 cut(s)	120, 142
HpyAV	CCTTC	1 cut(s)	9
HpyCH4III	ACNGT	3 cut(s)	90, 116, 130
HpyCH4V	TGCA	1 cut(s)	162
HpyF3I	CTNAG	2 cut(s)	200, 216
Kpn2I	TCCGGA	1 cut(s)	97
Kzo9I	GATC	4 cut(s)	60, 67, 205, 235
LmnI	GCTCC	2 cut(s)	87, 267
LpnPI	CCDG	4 cut(s)	71, 111, 122, 209
MaeI	CTAG	1 cut(s)	9
MaeIII	GTNAC	1 cut(s)	147
MalI	GATC	4 cut(s)	62, 69, 207, 237
MboI	GATC	4 cut(s)	60, 67, 205, 235
MluCI	AATT	1 cut(s)	45
MlyI	GAGTC	1 cut(s)	208
MmeI	TCCRAC	2 cut(s)	109, 147
MnlI	CCTC	1 cut(s)	209
MroI	TCCGGA	1 cut(s)	97
MseI	TTAA	1 cut(s)	276
MspI	CCGG	1 cut(s)	98
NdeII	GATC	4 cut(s)	60, 67, 205, 235
PcsI	WCGNNNNNNNCGW	2 cut(s)	112, 134
PfeI	GAWTC	2 cut(s)	103, 227
PkrI	GCNGC	1 cut(s)	256
PleI	GAGTC	1 cut(s)	208
PpsI	GAGTC	1 cut(s)	208
PshBI	ATTAAT	1 cut(s)	276
PstNI	CAGNNNCTG	1 cut(s)	223
SaqAI	TTAA	1 cut(s)	276
SatI	GCNGC	1 cut(s)	255
Sau3AI	GATC	4 cut(s)	60, 67, 205, 235
SchI	GAGTC	1 cut(s)	208
SetI	ASST	6 cut(s)	20, 35, 84, 201, 222, 272
Sse9I	AATT	1 cut(s)	45
SsiI	CCGC	1 cut(s)	255
SspMI	CTAG	1 cut(s)	9
TaaI	ACNGT	3 cut(s)	90, 116, 130
TaqI	TCGA	3 cut(s)	20, 140, 208
TasI	AATT	1 cut(s)	45
TauI	GCSGC	1 cut(s)	257
TfiI	GAWTC	2 cut(s)	103, 227
Tru1I	TTAA	1 cut(s)	276
Tru9I	TTAA	1 cut(s)	276
TscAI	CASTG	2 cut(s)	70, 208
TspRI	CASTG	2 cut(s)	70, 208
VspI	ATTAAT	1 cut(s)	276
XspI	CTAG	1 cut(s)	9

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.