Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0011749

Physical Location & Seq

Genomic Coordinates Forward (+)

15957368 .. 15958559

Gene Structure 1192 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT5G39860.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 279 bp

ATGTCGAACAGAAGATCAAGGCAATCTTCAAGTGCTCCAAGGATCTCCGATAATCAAATGATTGACCTCGTATCTAAGCTCCGTCAAATTTTGCCGGAGATTGGTCAACGACGTCGTTCTGATAAGGCATCAGCCTCGAAAGTATTGCAAGAGACATGCAATTACATACGAAATTTGAACAGAGAAGTTGACAATCTGAGCGAGCGTTTGTCTCAGCTTCTCGAATCTGTCGATGAAGATAGCCCTGAAGCCGCCGTTATTAGAAGCCTACTCATGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000902 GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0006355 GO:0007275 GO:0008150 GO:0009314 GO:0009416 GO:0009628 GO:0009639 GO:0009640 GO:0009653 GO:0009719 GO:0009725 GO:0009741 GO:0009791 GO:0009826 GO:0009889 GO:0009987 GO:0010033 GO:0010468 GO:0010556 GO:0014070 GO:0016043 GO:0016049 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0032989 GO:0033993 GO:0040007 GO:0040034 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0048506 GO:0048509 GO:0048510 GO:0048589 GO:0048856 GO:0048869 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0060255 GO:0060560 GO:0065007 GO:0071840 GO:0080090 GO:0140110 GO:1901700 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

HLH

Protein Analysis

92

Amino Acids

10.51

Weight (kDa)

9.09

Isoelectric Point (pI)

91.71

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
bHLH_ILI	PF23174	16 - 91	1.1e-28	ILI bHLH domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Orthologous Genes (Group: OG0011749)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G28857 AT5G15160 AT5G39860
fragaria_vesca	FvH4_3g04290 FvH4_6g48970
malus_domestica	MD09G1049300.v1.1 MD17G1049300.v1.1
prunus_persica	Prupe.3G269500_v2.0.a1 Prupe.3G269500_v2.0.a1 Prupe.3G269500_v2.0.a1
pyrus_communis	pycom111g04030
rosa_chinensis	RchiOBHm_Chr2g0168811
rosa_roxburghii	Rroxscaffold_2G00082660
rosa_rugosa	Rorug02G0535300
rosa_samantha	Rh2AG606400 Rh2BG619200 Rh2CG587800 Rh2DG629800
rosa_wichuraiana	Rw2G050260

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	115
AciI	CCGC	1 cut(s)	252
AclWI	GGATC	1 cut(s)	50
AcsI	RAATTY	2 cut(s)	87, 172
AcuI	CTGAAG	1 cut(s)	267
AcyI	GRCGYC	1 cut(s)	112
AfiI	CCNNNNNNNGG	1 cut(s)	101
AgsI	TTSAA	2 cut(s)	30, 178
AluBI	AGCT	2 cut(s)	79, 217
AluI	AGCT	2 cut(s)	79, 217
Alw21I	GWGCWC	1 cut(s)	37
Alw26I	GTCTC	2 cut(s)	146, 216
AlwI	GGATC	1 cut(s)	50
ApoI	RAATTY	2 cut(s)	87, 172
Bbv12I	GWGCWC	1 cut(s)	37
BceAI	ACGGC	1 cut(s)	239
BcgI	CGANNNNNNTGC	4 cut(s)	117, 127, 151, 161
BcoDI	GTCTC	2 cut(s)	146, 216
BisI	GCNGC	1 cut(s)	252
BlsI	GCNGC	1 cut(s)	253
BmsI	GCATC	1 cut(s)	137
BsaHI	GRCGYC	1 cut(s)	112
BsaJI	CCNNGG	1 cut(s)	38
Bsc4I	CCNNNNNNNGG	1 cut(s)	101
BseDI	CCNNGG	1 cut(s)	38
BseLI	CCNNNNNNNGG	1 cut(s)	101
BseMII	CTCAG	2 cut(s)	188, 227
BsiHKAI	GWGCWC	1 cut(s)	37
BsiSI	CCGG	1 cut(s)	95
BslI	CCNNNNNNNGG	1 cut(s)	101
BsmAI	GTCTC	2 cut(s)	146, 216
Bsp1286I	GDGCHC	1 cut(s)	37
Bsp143I	GATC	2 cut(s)	14, 42
BspACI	CCGC	1 cut(s)	252
BspCNI	CTCAG	2 cut(s)	189, 226
BspPI	GGATC	1 cut(s)	50
BssECI	CCNNGG	1 cut(s)	38
BssMI	GATC	2 cut(s)	14, 42
BssNI	GRCGYC	1 cut(s)	112
BssT1I	CCWWGG	1 cut(s)	38
BstACI	GRCGYC	1 cut(s)	112
BstC8I	GCNNGC	1 cut(s)	203
BstDEI	CTNAG	3 cut(s)	75, 197, 213
BstKTI	GATC	2 cut(s)	17, 45
BstMAI	GTCTC	2 cut(s)	146, 216
BstMBI	GATC	2 cut(s)	14, 42
BstNSI	RCATGY	1 cut(s)	159
BstX2I	RGATCY	1 cut(s)	42
BstYI	RGATCY	1 cut(s)	42
Cac8I	GCNNGC	1 cut(s)	203
CviAII	CATG	2 cut(s)	156, 274
CviJI	RGCY	6 cut(s)	79, 134, 217, 243, 251, 267
CviKI_1	RGCY	6 cut(s)	79, 134, 217, 243, 251, 267
DdeI	CTNAG	3 cut(s)	75, 197, 213
DpnI	GATC	2 cut(s)	16, 44
DpnII	GATC	2 cut(s)	14, 42
Eco130I	CCWWGG	1 cut(s)	38
Eco57I	CTGAAG	1 cut(s)	267
EcoT14I	CCWWGG	1 cut(s)	38
ErhI	CCWWGG	1 cut(s)	38
FaeI	CATG	2 cut(s)	159, 277
FaiI	YATR	3 cut(s)	157, 167, 275
FalI	AAGNNNNNCTT	2 cut(s)	10, 42
FatI	CATG	2 cut(s)	155, 273
Fnu4HI	GCNGC	1 cut(s)	252
Fsp4HI	GCNGC	1 cut(s)	252
GluI	GCNGC	1 cut(s)	252
HapII	CCGG	1 cut(s)	95
Hin1I	GRCGYC	1 cut(s)	112
Hin1II	CATG	2 cut(s)	159, 277
HincII	GTYRAC	2 cut(s)	107, 190
HindII	GTYRAC	2 cut(s)	107, 190
HinfI	GANTC	1 cut(s)	224
HpaII	CCGG	1 cut(s)	95
Hpy166II	GTNNAC	2 cut(s)	107, 190
Hpy188I	TCNGA	3 cut(s)	49, 121, 198
Hpy188III	TCNNGA	1 cut(s)	221
Hpy8I	GTNNAC	2 cut(s)	107, 190
Hpy99I	CGWCG	2 cut(s)	114, 117
HpyCH4IV	ACGT	1 cut(s)	112
HpyCH4V	TGCA	2 cut(s)	148, 159
HpyF3I	CTNAG	3 cut(s)	75, 197, 213
HpySE526I	ACGT	1 cut(s)	112
Hsp92I	GRCGYC	1 cut(s)	112
Hsp92II	CATG	2 cut(s)	159, 277
Kzo9I	GATC	2 cut(s)	14, 42
LmnI	GCTCC	2 cut(s)	40, 84
LpnPI	CCDG	2 cut(s)	108, 258
LweI	GCATC	1 cut(s)	137
MaeII	ACGT	1 cut(s)	112
MalI	GATC	2 cut(s)	16, 44
MboI	GATC	2 cut(s)	14, 42
MboII	GAAGA	3 cut(s)	18, 24, 248
MflI	RGATCY	1 cut(s)	42
MhlI	GDGCHC	1 cut(s)	37
MluCI	AATT	3 cut(s)	87, 160, 172
MnlI	CCTC	2 cut(s)	77, 145
MspI	CCGG	1 cut(s)	95
NdeII	GATC	2 cut(s)	14, 42
NlaIII	CATG	2 cut(s)	159, 277
NspI	RCATGY	1 cut(s)	159
PcsI	WCGNNNNNNNCGW	1 cut(s)	228
PfeI	GAWTC	1 cut(s)	224
PkrI	GCNGC	1 cut(s)	253
PsuI	RGATCY	1 cut(s)	42
SatI	GCNGC	1 cut(s)	252
Sau3AI	GATC	2 cut(s)	14, 42
SduI	GDGCHC	1 cut(s)	37
SetI	ASST	4 cut(s)	69, 81, 115, 219
SfaNI	GCATC	1 cut(s)	137
Sse9I	AATT	3 cut(s)	87, 160, 172
SsiI	CCGC	1 cut(s)	252
StyI	CCWWGG	1 cut(s)	38
TaiI	ACGT	1 cut(s)	115
TaqI	TCGA	4 cut(s)	5, 137, 222, 231
TasI	AATT	3 cut(s)	87, 160, 172
TauI	GCSGC	1 cut(s)	254
TfiI	GAWTC	1 cut(s)	224
TspDTI	ATGAA	1 cut(s)	249
TspGWI	ACGGA	1 cut(s)	71
XapI	RAATTY	2 cut(s)	87, 172
XceI	RCATGY	1 cut(s)	159
ZraI	GACGTC	1 cut(s)	113

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.