Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0005862

Physical Location & Seq

Genomic Coordinates Reverse (-)

11154903 .. 11157293

Gene Structure 2391 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT3G29185.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1191 bp

ATGGCTGCTGCTACTTCCTTCACTTGCTCACTTCCTTTTACTCCACTATCCAAATCCCTTAAACCCATTCGTTCCCCAATTCTACGCTCAGACTATGGAACCAGCAGAAGCTTTGTTATAAGATCCATGACGGTTCAAGAAGATGACAAGAGAACAAGCGATGAATCAATGAGTATTGACAATTTACGAGGATTCGTCGATCTTAATGTCGGAAAATGGACTGGCTCCTTTCATCAATTTGATGGTAATGGGAATTTGTTACATAAGATTGATACACGTCTTTCAGCTAGTTCTTATGGAGAAGATGAGCTCCTTAGTCTTAATCAATCGTTATATATAAAGCAGCCTACATCAGCTACTTCAGTTTCCGAAGAGGAGGAAGAGGAACCGGAATGGGTAGAGTACAAAATTAAAGAAACCAATATGTTCACTGTGGACAAGTATCAGCAGATTGGATTTTTCCCAAAGGAGAGAGCGTTTTCGCTGAGGTACCAAACCGCTGGAATGTTGGATACGACGTTAAGGCAGGGCGTGCTCGGGGAGGATGACACGGGAGAAGAATCACCAAGAAATCTTAAACTTCCATCTCGGCGTCCGTCTTTAGTATGTGAGAACTGTTTGTATTCTAAGGAGATAGATAGAAGGGCTAGAGCCTTTCACATCATGGATCCTAAAGGTGTTCTTGAAATGCTTATTGTTTTCCTCGAGGAAAGAGGGTTAGAGAATCTCGCTCATCCAGTCCTCGATAACGCTCAGAACGATGCAGAAAGGATAAACCCATTTCTCGGTACTTGGAAAGGTCGTTCGGTAACAAAACGAAGCGGTGTCTATGGAGCAACACTATCAGAAGCCGATACTGTTGCTGTTCTTGAAATGAATGACAAAGGTCAAGTAGTCCAGGATATTTCGTCGACATCGGATGAGAAAAAAGTAACAACAAATGTGCACTGGGAAGGGAAAATGTCGAAAGACTTGGTTACATTCGCGGAAGGATACCAAATGACTCTGTTACCCGGAGGTATGTACATGGGATGTCCTTGCGACGTATCAAAGTGTGTTGCTGATTTAAAGTCTTTCCACTTAGAATTCTGCTGGCTTGAATCGCCGAGCTCAAGACAAAGACTCATCCGCACATATGACCATGAAGGTTTAGCTGTCTCATCAACTTATTTTACTGAGACAAAAATGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF3598 WRKY

Protein Analysis

396

Amino Acids

44.68

Weight (kDa)

5.24

Isoelectric Point (pI)

47.84

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DUF3598_N	PF12204	60 - 239	4.8e-20	Domain of unknown function (DUF3598), N-terminal
BFA1_C	PF21053	257 - 396	5.3e-16	Biogenesis factor required for ATP synthase 1, C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005862)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G29185 AT3G29185
fragaria_vesca	FvH4_6g47790 FvH4_6g47790 FvH4_6g47790 FvH4_6g47790 FvH4_6g47790 FvH4_6g47790
malus_domestica	MD09G1056700.v1.1 MD17G1054200.v1.1
prunus_persica	Prupe.3G262000_v2.0.a1 Prupe.3G262000_v2.0.a1 Prupe.3G262000_v2.0.a1 Prupe.3G262000_v2.0.a1
pyrus_communis	pycom111g04750 pycom17g05190
rosa_chinensis	RchiOBHm_Chr2g0166981
rosa_laevigata	RLG00000021686
rosa_multiflora	Rmu_sc0002735.1_g000026 Rmu_sc0010966.1_g000002 Rmu_sc0025421.1_g000003
rosa_roxburghii	Rroxscaffold_2G00083840
rosa_rugosa	Rorug02G0527100
rosa_samantha	Rh2AG594000 Rh2BG605500 Rh2CG576400 Rh2DG617000
rosa_wichuraiana	Rw2G049460

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	119
AbsI	CCTCGAGG	1 cut(s)	704
Acc65I	GGTACC	1 cut(s)	489
AccB1I	GGYRCC	1 cut(s)	489
AccI	GTMKAC	1 cut(s)	911
AccII	CGCG	1 cut(s)	986
AciI	CCGC	4 cut(s)	498, 822, 986, 1129
AclWI	GGATC	3 cut(s)	117, 662, 675
AcsI	RAATTY	2 cut(s)	253, 1085
AcuI	CTGAAG	1 cut(s)	345
AcyI	GRCGYC	1 cut(s)	592
AfaI	GTAC	4 cut(s)	404, 491, 790, 1025
AfiI	CCNNNNNNNGG	1 cut(s)	785
AflIII	ACRYGT	1 cut(s)	275
AgsI	TTSAA	4 cut(s)	137, 686, 872, 1100
AjiI	CACGTC	1 cut(s)	278
AjnI	CCWGG	1 cut(s)	897
AloI	GAACNNNNNNTCC	2 cut(s)	787, 819
AluBI	AGCT	6 cut(s)	111, 287, 310, 356, 1110, 1154
AluI	AGCT	6 cut(s)	111, 287, 310, 356, 1110, 1154
Alw21I	GWGCWC	4 cut(s)	312, 537, 948, 1112
Alw26I	GTCTC	2 cut(s)	1162, 1172
Alw44I	GTGCAC	1 cut(s)	944
AlwI	GGATC	3 cut(s)	117, 662, 675
Ama87I	CYCGRG	2 cut(s)	536, 704
ApaLI	GTGCAC	1 cut(s)	944
ApeKI	GCWGC	3 cut(s)	5, 8, 343
ApoI	RAATTY	2 cut(s)	253, 1085
Asp718I	GGTACC	1 cut(s)	489
AsuC2I	CCSGG	1 cut(s)	1014
AsuHPI	GGTGA	1 cut(s)	555
AvaI	CYCGRG	2 cut(s)	536, 704
BaeGI	GKGCMC	1 cut(s)	948
BamHI	GGATCC	1 cut(s)	667
BanI	GGYRCC	1 cut(s)	489
BanII	GRGCYC	2 cut(s)	312, 1112
Bbv12I	GWGCWC	4 cut(s)	312, 537, 948, 1112
BbvCI	CCTCAGC	1 cut(s)	485
BbvI	GCAGC	1 cut(s)	355
BccI	CCATC	2 cut(s)	236, 592
BcgI	CGANNNNNNTGC	2 cut(s)	842, 876
BciT130I	CCWGG	1 cut(s)	899
BciVI	GTATCC	2 cut(s)	505, 986
BcnI	CCSGG	1 cut(s)	1014
BcoDI	GTCTC	2 cut(s)	1162, 1172
BfaI	CTAG	2 cut(s)	288, 648
BfuI	GTATCC	2 cut(s)	505, 986
BisI	GCNGC	3 cut(s)	6, 9, 344
BlsI	GCNGC	3 cut(s)	7, 10, 345
Bme1390I	CCNGG	2 cut(s)	899, 1014
BmeT110I	CYCGRG	2 cut(s)	536, 704
BmgBI	CACGTC	1 cut(s)	278
BmiI	GGNNCC	5 cut(s)	100, 226, 387, 491, 669
BmrFI	CCNGG	2 cut(s)	899, 1014
BmrI	ACTGGG	1 cut(s)	958
BmsI	GCATC	1 cut(s)	751
BmuI	ACTGGG	1 cut(s)	958
BoxI	GACNNNNGTC	1 cut(s)	885
Bpu10I	CCTNAGC	1 cut(s)	485
BpuEI	CTTGAG	1 cut(s)	1096
BpuMI	CCSGG	1 cut(s)	1014
BsaHI	GRCGYC	1 cut(s)	592
BsaWI	WCCGGW	1 cut(s)	388
BsaXI	ACNNNNNCTCC	2 cut(s)	461, 491
Bsc4I	CCNNNNNNNGG	1 cut(s)	785
Bse1I	ACTGG	3 cut(s)	226, 737, 953
BseBI	CCWGG	1 cut(s)	899
BseGI	GGATG	5 cut(s)	550, 733, 925, 1037, 1125
BseLI	CCNNNNNNNGG	1 cut(s)	785
BseMII	CTCAG	4 cut(s)	102, 476, 767, 1167
BseNI	ACTGG	3 cut(s)	226, 737, 953
BseRI	GAGGAG	1 cut(s)	389
BseSI	GKGCMC	1 cut(s)	948
BseXI	GCAGC	1 cut(s)	355
Bsh1236I	CGCG	1 cut(s)	986
BshNI	GGYRCC	1 cut(s)	489
BsiHKAI	GWGCWC	4 cut(s)	312, 537, 948, 1112
BsiHKCI	CYCGRG	2 cut(s)	536, 704
BsiSI	CCGG	2 cut(s)	389, 1014
BslI	CCNNNNNNNGG	1 cut(s)	785
BsmAI	GTCTC	2 cut(s)	1162, 1172
BsoBI	CYCGRG	2 cut(s)	536, 704
Bsp1286I	GDGCHC	4 cut(s)	312, 537, 948, 1112
Bsp1407I	TGTACA	1 cut(s)	1023
Bsp143I	GATC	3 cut(s)	122, 199, 667
BspACI	CCGC	4 cut(s)	498, 822, 986, 1129
BspCNI	CTCAG	4 cut(s)	101, 477, 766, 1168
BspFNI	CGCG	1 cut(s)	986
BspLI	GGNNCC	5 cut(s)	100, 226, 387, 491, 669
BspPI	GGATC	3 cut(s)	117, 662, 675
BspT107I	GGYRCC	1 cut(s)	489
BsrGI	TGTACA	1 cut(s)	1023
BsrI	ACTGG	3 cut(s)	226, 737, 953
BssMI	GATC	3 cut(s)	122, 199, 667
BssNI	GRCGYC	1 cut(s)	592
Bst2UI	CCWGG	1 cut(s)	899
Bst4CI	ACNGT	4 cut(s)	133, 433, 617, 859
Bst6I	CTCTTC	2 cut(s)	366, 375
BstACI	GRCGYC	1 cut(s)	592
BstAPI	GCANNNNNTGC	1 cut(s)	532
BstAUI	TGTACA	1 cut(s)	1023
BstC8I	GCNNGC	2 cut(s)	533, 1094
BstDEI	CTNAG	7 cut(s)	88, 314, 485, 627, 753, 1081, 1176
BstF5I	GGATG	5 cut(s)	550, 733, 925, 1037, 1125
BstFNI	CGCG	1 cut(s)	986
BstKTI	GATC	3 cut(s)	125, 202, 670
BstMAI	GTCTC	2 cut(s)	1162, 1172
BstMBI	GATC	3 cut(s)	122, 199, 667
BstMWI	GCNNNNNNNGC	2 cut(s)	532, 1102
BstNI	CCWGG	1 cut(s)	899
BstPAI	GACNNNNGTC	1 cut(s)	885
BstSCI	CCNGG	2 cut(s)	897, 1012
BstSLI	GKGCMC	1 cut(s)	948
BstUI	CGCG	1 cut(s)	986
BstV1I	GCAGC	1 cut(s)	355
BstX2I	RGATCY	2 cut(s)	122, 667
BstXI	CCANNNNNNTGG	1 cut(s)	500
BstYI	RGATCY	2 cut(s)	122, 667
BsuI	GTATCC	2 cut(s)	505, 986
BtgZI	GCGATG	1 cut(s)	174
BtrI	CACGTC	1 cut(s)	278
BtsCI	GGATG	5 cut(s)	550, 733, 925, 1037, 1125
BtsIMutI	CAGTG	2 cut(s)	429, 946
Cac8I	GCNNGC	2 cut(s)	533, 1094
CseI	GACGC	1 cut(s)	581
Csp6I	GTAC	4 cut(s)	403, 490, 789, 1024
CviAII	CATG	4 cut(s)	127, 664, 1027, 1142
CviQI	GTAC	4 cut(s)	403, 490, 789, 1024
DdeI	CTNAG	7 cut(s)	88, 314, 485, 627, 753, 1081, 1176
DpnI	GATC	3 cut(s)	124, 201, 669
DpnII	GATC	3 cut(s)	122, 199, 667
DraI	TTTAAA	1 cut(s)	1068
Eam1104I	CTCTTC	2 cut(s)	366, 375
EarI	CTCTTC	2 cut(s)	366, 375
Ecl136II	GAGCTC	2 cut(s)	310, 1110
Eco24I	GRGCYC	2 cut(s)	312, 1112
Eco53kI	GAGCTC	2 cut(s)	310, 1110
Eco57I	CTGAAG	1 cut(s)	345
Eco88I	CYCGRG	2 cut(s)	536, 704
EcoICRI	GAGCTC	2 cut(s)	310, 1110
EcoRI	GAATTC	1 cut(s)	1085
EcoRII	CCWGG	1 cut(s)	897
EcoT38I	GRGCYC	2 cut(s)	312, 1112
FaeI	CATG	4 cut(s)	130, 667, 1030, 1145
FalI	AAGNNNNNCTT	2 cut(s)	666, 698
FatI	CATG	4 cut(s)	126, 663, 1026, 1141
FauNDI	CATATG	1 cut(s)	1135
FblI	GTMKAC	1 cut(s)	911
Fnu4HI	GCNGC	3 cut(s)	6, 9, 344
FokI	GGATG	5 cut(s)	557, 720, 932, 1044, 1112
FriOI	GRGCYC	2 cut(s)	312, 1112
Fsp4HI	GCNGC	3 cut(s)	6, 9, 344
FspBI	CTAG	2 cut(s)	288, 648
GluI	GCNGC	3 cut(s)	6, 9, 344
HapII	CCGG	2 cut(s)	389, 1014
HgaI	GACGC	1 cut(s)	581
Hin1I	GRCGYC	1 cut(s)	592
Hin1II	CATG	4 cut(s)	130, 667, 1030, 1145
HincII	GTYRAC	1 cut(s)	912
HindII	GTYRAC	1 cut(s)	912
HindIII	AAGCTT	1 cut(s)	109
HinfI	GANTC	7 cut(s)	164, 192, 560, 724, 1003, 1100, 1122
HpaII	CCGG	2 cut(s)	389, 1014
HphI	GGTGA	1 cut(s)	555
Hpy166II	GTNNAC	4 cut(s)	429, 436, 912, 946
Hpy188I	TCNGA	6 cut(s)	91, 212, 370, 756, 847, 919
Hpy188III	TCNNGA	4 cut(s)	137, 683, 869, 1113
Hpy8I	GTNNAC	4 cut(s)	429, 436, 912, 946
Hpy99I	CGWCG	4 cut(s)	200, 520, 913, 1046
HpyAV	CCTTC	5 cut(s)	28, 636, 947, 983, 1139
HpyCH4III	ACNGT	4 cut(s)	133, 433, 617, 859
HpyCH4IV	ACGT	3 cut(s)	277, 518, 1044
HpyCH4V	TGCA	2 cut(s)	764, 946
HpyF10VI	GCNNNNNNNGC	2 cut(s)	532, 1102
HpyF3I	CTNAG	7 cut(s)	88, 314, 485, 627, 753, 1081, 1176
HpySE526I	ACGT	3 cut(s)	277, 518, 1044
Hsp92I	GRCGYC	1 cut(s)	592
Hsp92II	CATG	4 cut(s)	130, 667, 1030, 1145
KpnI	GGTACC	1 cut(s)	493
Kzo9I	GATC	3 cut(s)	122, 199, 667
LmnI	GCTCC	3 cut(s)	230, 315, 833
Lsp1109I	GCAGC	1 cut(s)	355
LweI	GCATC	1 cut(s)	751
MaeI	CTAG	2 cut(s)	288, 648
MaeII	ACGT	3 cut(s)	277, 518, 1044
MaeIII	GTNAC	5 cut(s)	258, 808, 931, 976, 1008
MalI	GATC	3 cut(s)	124, 201, 669
MboI	GATC	3 cut(s)	122, 199, 667
MboII	GAAGA	5 cut(s)	152, 314, 383, 392, 569
MflI	RGATCY	2 cut(s)	122, 667
MhlI	GDGCHC	4 cut(s)	312, 537, 948, 1112
MluCI	AATT	6 cut(s)	78, 181, 236, 253, 408, 1085
MlyI	GAGTC	2 cut(s)	997, 1116
MmeI	TCCRAC	2 cut(s)	190, 489
MseI	TTAA	7 cut(s)	60, 204, 321, 411, 521, 576, 1067
MspA1I	CMGCKG	1 cut(s)	500
MspI	CCGG	2 cut(s)	389, 1014
MspR9I	CCNGG	2 cut(s)	899, 1014
MvaI	CCWGG	1 cut(s)	899
MvnI	CGCG	1 cut(s)	986
MwoI	GCNNNNNNNGC	2 cut(s)	532, 1102
NciI	CCSGG	1 cut(s)	1014
NdeI	CATATG	1 cut(s)	1135
NdeII	GATC	3 cut(s)	122, 199, 667
NlaIII	CATG	4 cut(s)	130, 667, 1030, 1145
NlaIV	GGNNCC	5 cut(s)	100, 226, 387, 491, 669
NmeAIII	GCCGAG	2 cut(s)	568, 1131
PaeR7I	CTCGAG	1 cut(s)	704
PcsI	WCGNNNNNNNCGW	1 cut(s)	756
PfeI	GAWTC	5 cut(s)	164, 192, 560, 724, 1100
PfoI	TCCNGGA	1 cut(s)	897
PkrI	GCNGC	3 cut(s)	7, 10, 345
PleI	GAGTC	2 cut(s)	997, 1116
PpsI	GAGTC	2 cut(s)	997, 1116
PshAI	GACNNNNGTC	1 cut(s)	885
PsiI	TTATAA	1 cut(s)	119
Psp124BI	GAGCTC	2 cut(s)	312, 1112
Psp6I	CCWGG	1 cut(s)	897
PspGI	CCWGG	1 cut(s)	897
PspN4I	GGNNCC	5 cut(s)	100, 226, 387, 491, 669
PspXI	VCTCGAGB	1 cut(s)	704
PsuI	RGATCY	2 cut(s)	122, 667
RsaI	GTAC	4 cut(s)	404, 491, 790, 1025
RsaNI	GTAC	4 cut(s)	403, 490, 789, 1024
SacI	GAGCTC	2 cut(s)	312, 1112
SalI	GTCGAC	1 cut(s)	910
SaqAI	TTAA	7 cut(s)	60, 204, 321, 411, 521, 576, 1067
SatI	GCNGC	3 cut(s)	6, 9, 344
Sau3AI	GATC	3 cut(s)	122, 199, 667
SchI	GAGTC	2 cut(s)	997, 1116
ScrFI	CCNGG	2 cut(s)	899, 1014
SduI	GDGCHC	4 cut(s)	312, 537, 948, 1112
SfaNI	GCATC	1 cut(s)	751
Sfr274I	CTCGAG	1 cut(s)	704
SlaI	CTCGAG	1 cut(s)	704
SmlI	CTYRAG	2 cut(s)	704, 1111
SmoI	CTYRAG	2 cut(s)	704, 1111
Sse9I	AATT	6 cut(s)	78, 181, 236, 253, 408, 1085
SsiI	CCGC	4 cut(s)	498, 822, 986, 1129
SspMI	CTAG	2 cut(s)	288, 648
SstI	GAGCTC	2 cut(s)	312, 1112
StyD4I	CCNGG	2 cut(s)	897, 1012
TaaI	ACNGT	4 cut(s)	133, 433, 617, 859
TaiI	ACGT	3 cut(s)	280, 521, 1047
TaqI	TCGA	5 cut(s)	198, 705, 744, 911, 965
TasI	AATT	6 cut(s)	78, 181, 236, 253, 408, 1085
TatI	WGTACW	2 cut(s)	402, 1023
TfiI	GAWTC	5 cut(s)	164, 192, 560, 724, 1100
Tru1I	TTAA	7 cut(s)	60, 204, 321, 411, 521, 576, 1067
Tru9I	TTAA	7 cut(s)	60, 204, 321, 411, 521, 576, 1067
TscAI	CASTG	2 cut(s)	436, 953
TseI	GCWGC	3 cut(s)	5, 8, 343
TspDTI	ATGAA	4 cut(s)	177, 221, 890, 1158
TspGWI	ACGGA	1 cut(s)	585
TspRI	CASTG	2 cut(s)	436, 953
VneI	GTGCAC	1 cut(s)	944
XapI	RAATTY	2 cut(s)	253, 1085
XhoI	CTCGAG	1 cut(s)	704
XmiI	GTMKAC	1 cut(s)	911
XspI	CTAG	2 cut(s)	288, 648

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.